Information Sciences Institute -

Tallis, M., R. Thompson, T. Russ, and G. A. P. C. Burns, "Knowledge synthesis with maps of neural connectivity", Frontiers in Neuroinformatics, pp. 5:24, 10/2011.

Russ, T., C. Ramakrishnan, E. H. Hovy, M. Bota, and G. A. P. C. Burns, "Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case", BMC Bioinformatics, pp. 12: 351, 08/2011.

Burns, G. A. P. C., M. Krallinger, K. B. Cohen, C. H. Wu, and L. Hirschman, "Biocuration Workflow Catalogue - Text Mining for the Biocuration Workflow", 3rd International Biocurators Meeting, Berlin, 2009.

Burns, G. A. P. C., and T. Russ, "Biomedical Knowledge Engineering tools based on Experimental Design: a case study based on neuroanatomical tract-tracing experiments", KCAP 2009, Long Beach CA, 2009.

Burns, G. A. P. C., T. Russ, T. Ingulfsen, and E. Hovy, "BioScholar: A knowledge engineering system for biology and it's application to neural connectivity data.", 2nd Congress of the International Neuroinformatics Coordinating Facility (INCF2009), Pilsen, Czech Republic, 2009.

Herr, B. W., E. M. Talley, G. A. P. C. Burns, D. Newman, and G. LaRowe, "The NIH Visual Browser: An Interactive Visualization of Biomedical Research", 13th International Conference on Information Visualization (IV09), Barcelona, Spain, 2009.

Burns, G. A. P. C., T. Russ, T. Ingulfsen, A. M. Khan, and E. Hovy, "Using Knowledge Engineering Approaches to Reason About Neuroanatomical Experiments", Society for Neuroscience Annual Meeting, Chicago, IL, 2009.

Burns, G. A. P. C., E. Hovy, and T. Ingulfsen, "Biomedical knowledge engineering approaches driven by processing the primary experimental literature.", Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics 2008, Stockholm, Sweden, 2008.

Feng, D., G. A. P. C. Burns, and E. H. Hovy, "Towards Automated Semantic Analysis on Large Scale Biomedical Text", Proceedings of the International Joint Conference on NLP (IJCNLP)., Hyderabad, India., 2008.

Burns, G. A. P. C., B. Herr, D. Newman, T. Ingulfsen, P. Pantel, and P. Smyth, "A snapshot of neuroscience: unsupervised natural language processing of abstracts from the Society for Neuroscience 2006 annual meeting", Annual Meeting of the Society for Neuroscience, San Diego, pp. 100.6 / XX26, 2007.

Burns, G. A. P. C., T. Ingulfsen, D. Feng, and E. H. Hovy, "Using large-scale semi-automated information extraction for the biocuration of experimental observations: the million-paper challenge.", 2nd International Biocurators meeting, San Jose, CA, 2007.

Cheng, W. - C., and G. A. P. C. Burns, NeuARt II Developers Manual, : University of Southern California, Information Sciences Institute., 24 July 2006.

Cheng, W. - C., and G. A. P. C. Burns, NeuroScholar WebService Developer's Manual, : University of Southern California, Information Sciences Institute., 24 July 2006.

Khan, A. M., J. D. Hahn, W. - C. Cheng, A. G. Watts, and G. A. P. C. Burns, "NeuroScholar's Electronic Laboratory Notebook and its Application to Neuroendocrinology", Neuroinformatics, vol. 4, no. 2, pp. 139-160, 2006.

Burns, G. A. P. C., A. M. Khan, W. C. Cheng, and A. G. Watts, "A 'Stress Management' System: Computational knowledge representation of experiments that delineate neural circuits and histochemical expression patterns based on the primary literature and raw data", 2005 Workshop on the Neuroendocrinology of Stress, San Diego, 2005.

Burns, G. A. P. C., A. M. Khan, W. - C. Cheng, and A. G. Watts, "A computational knowledge representation for physiological experiments with direct links to the primary literature and raw data", Annual Meeting of the Society for Neuroscience, Washington, DC, 2005.

Saxena, M., S. Kim, G. A. P. C. Burns, A. M. Khan, J. Su, Y. Hamadi, and S. Ghandeharizadeh, "An Overview of Sangam: A System for Integrating Data to Investigate Stress-Circuitry-Gene Coupling", IVNET, submitted, 2005.

Goto, M., N. S. Canteras, G. A. P. C. Burns, and L. W. Swanson, "Projections from the Subfornical Region of the Lateral Hypothalamic Area", J Comp Neurol, vol. 493, no. 3, pp. 412-38, 2005.

Cheng, W. - C., G. A. P. C. Burns, R. H. Thompson, and L. W. Swanson, "Tools for knowledge representation, acquisition and retrieval of neuroanatomical data mapped onto a standard atlas.", Annual Meeting of the Society for Neuroscience, Washington D.C., pp. 571.4, 2005.

Khan, A. M., W. C. Cheng, A. G. Watts, and G. A. P. C. Burns, "Histochemical studies of stress-activated paraventricular hypothalamic neuroendocrine neurons: a neuroinformatics-based digital lab notebook to relate the primary literature to raw, unpublished data", Society for Neuroscience Annual Meeting, San Diego, 2004.

Chen, Y. - S., C. Shahabi, and G. A. P. C. Burns, "Two-phase Decision Fusion Based on User Preference", Hawaii International Conference on Computer Sciences, Honolulu Hawaii, 2004.

Song, S., K. Chan, A. Golypayegani, S. Ghandeharizadeh, C. Shahabi, and G. A. P. C. Burns, "Tools for knowledge management of the neuroscientific literature, plugins for the NeuroScholar system", Computational Neuroscience, Chicago, IL, 2003.

Burns, G. A. P. C., W. - C. Cheng, N. Zhang, and S. Ghandeharizadeh, "Web services as tools within a scientific knowledge engineering environment", SCI, Miami FL., 2003.

Burns, G. A. P. C., F. Bian, W. - C. Cheng, S. Kapadia, C. Shahabi, and S. Ghandeharizadeh, "Software engineering tools and approaches for neuroinformatics: the design and implementation of the View-Primitive Data Model framework (VPDMf)", Neurocomputing, vol. 44-46, pp. 1049-1056, 2002.

Burns, G. A. P. C., "Knowledge Mechanics and the NeuroScholar Project: A New Approach to Neuroscientific Theory", Computing the Brain, A guide to Neuroinformatics, San Diego, Academic Press, pp. 319-335, 2001.