Publications

• "Expressive Reusable Workflow Templates", Yolanda Gil, Paul Groth, Varun Ratnakar, Christian Fritz. In To appear in Proceedings of the Fifth IEEE International Conference on e-Science, 2009
  


• "Workflow Matching Using Semantic Metadata", Yolanda Gil, Jihie Kim, Yolanda Gil, Gonzalo Florez, Varun Ratnakar, Pedro A. Gonzalez Calero. In Proceedings of the Fifth International Conference on Knowledge Capture (K-CAP), 2009
  


• "From Data to Knowledge to Discoveries: Scientific Workflows and Artificial Intelligence", Yolanda Gil. In To appear in Scientific Programming, 2009
  


• "Principles for Interactive Acquisition and Validation of Workflows", Yolanda Gil, Jihie Kim, Marc Spraragen. In To appear in the Journal of Experimental and Theoretical Artificial Intelligence, 2009
  


• "A Scientific Workflow Construction Command Line", Paul Groth, Yolanda Gil. In 2009 ACM International Conference on Intelligent User Interfaces (IUI), Sanibel, FL, February 8-11, 2009
  


• "Provenance Trails in the Wings/Pegasus Workflow System", Jihie Kim, Ewa Deelman, Yolanda Gil, Gaurang Mehta, Varun Ratnakar. In Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge, Vol 20, Issue 5, April 2008
  


• "Scientific Software as Workflows: From Discovery to Distribution", David Woollard, Nenad Medvidovic, Yolanda Gil, Chris Mattmann. In IEEE Software, Special Issue on Developing Scientific Software, July/August 2008
  


• "Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging.", Vijay Kumar, Mary Hall, Jihie Kim, Yolanda Gil, Tahsin Kurc, Ewa Deelman, Joel Saltz. In Proceedings of NSF Workshop on Next Generation Software, held in conjunction with the IEEE International Symposium on Parallel and Distributed Processing (IPDPS-08), Miami, FL, April 2008
  


• "Self-Configuring Applications for Heterogeneous Systems: Program Composition and Optimization Using Cognitive Techniques", Mary Hall, Yolanda Gil, Robert Lucas. In Proceedings of the IEEE, Special Issue on Cutting-Edge Computing: Using New Commodity Architectures, Volume 96, Issue 5, May 2008
  


• "Examining the Challenges of Scientific Workflows", Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers. In IEEE Computer, vol. 40, no. 12, pp. 24-32, December, 2007
  


• "Privacy Enforcement in Data Analysis Workflows", Yolanda Gil, William K. Cheung, Varun Ratnakar, Kai-kin Chan. In 2007 Workshop on Privacy Enforcement and Accountability with Semantics (PEAS'07), held in conjunction with the Sixth International Semantic Web Conference (ISWC'07) and the Second Asian Semantic Web Conference (ASWC'07), Busan, Korea, November 11-15, 2007
  


• "Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows", Yolanda Gil, Varun Ratnakar, Ewa Deelman, Gaurang Mehta, Jihie Kim. In Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI), Vancouver, British Columbia, Canada, July 22-26, 2007
  


• "Workflow Composition", Yolanda Gil. In In Workflows for e-Science, D. Gannon, E. Deelman, M. Shields, I. Taylor (Eds), Springer Verlag, 2006
  


• "Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges", Ewa Deelman, Yolanda Gil. In Proceedings of the Workshop on Scientific Workflows and Business Workflow Standards in e-Science, The Second IEEE International Conference on e-Science and Grid Computing, Amsterdam, The Netherlands, December 4-6, 2006
  


• "Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows", Yolanda Gil, Varun Ratnakar, Ewa Deelman, Marc Spraragen, Jihie Kim. In Proceedings of the OWL: Experiences and Directions 2006 (OWLED-06), Athens, GA, November 10-11, 2006
  


• "Semantic Metadata Generation for Large Scientific Workflows", Jihie Kim, Yolanda Gil, Varun Ratnakar. In Proceedings of the Fifth International Semantic Web Conference (ISWC-06), Athens, GA, November 5-9, 2006
  


• "On Agents and Grids: Creating the Fabric of a New Generation of Distributed Intelligent Systems", Yolanda Gil. In Journal of Web Semantics, Volume 4, Issue 2, June 2006
  


• "Workflow Composition", Yolanda Gil. In "Workflows for e-Science", D. Gannon, E. Deelman, M. Shields, I.Taylor (Eds)
  


• "Semantic Metadata Generation for Large Scientific Workflows", Jihie Kim, Yolanda Gil, Varun Ratnakar. In International Semantic Web Conference, ISWC-2006, Athens, Georgia, USA
  


• "Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows", Yolanda Gil, Varun Ratnakar, Ewa Deelman, Marc Sparagen, Jihie Kim. In OWL: Experiences and Directions 2006, OWL-2006, Athens, Georgia, USA