Ewa Deelman, Ph.D.

 

These are the publication as of 1/2013, For most up-to-date publications, please visit the Pegasus website

My papers on DBLP



You can also view my profile

on Google Scholar here

on Microsoft Academic Search here


Book Editor

     Workflows for e-Science: Scientific Workflows for Grids, Ian J. Taylor, Ewa Deelman, Dennis B. Gannon, Matthew Shields (Editors), Springer, January 2007


Journals


1.Ying Wang, Gaurang Mehta, Rajiv Mayani, Jingxi Lu, Tade Souaiaia, Yangho Chen, Andrew Clark, Hee Jae Yoon, Lin Wan, Oleg V. Evgrafov, James A. Knowles, Ewa Deelman, and Ting Chen, RseqFlow: Workflows for RNA-Seq data analysis, Bioinformatics (2011) first published online July 27, 2011 doi:10.1093/bioinformatics/btr441

  1. 2.Yolanda Gil, Varun  Ratnakar, Jihie Kim, Pedro Gonzalez-Calero, Paul Groth, Joshua Moody, and Ewa Deelman, Wings: Intelligent Workflow-Based Design of Computational Experiments. IEEE Intelligent Systems, 26(1), 2011.

  2. 3.Eun-Kyu Byun, Yang-Suk Kee, Jin-Soo Kim, Ewa Deelman, Seungryoul Maeng: BTS: Resource capacity estimate for time-targeted science workflows. J. Parallel Distrib. Comput. (JPDC) 71(6):848-862 (2011)

4.Saccone SF, Quan J, Mehta G, Bolze R, Thomas P, Deelman E, Tischfield JA, Rice JP,  New tools and methods for direct programmatic access to the dbSNP relational database.  Nucleic Acids Res. 2010 Oct 30.

5.Saccone SF, Bolze R, Thomas P, Quan J, Mehta G, Deelman E, Tischfield JA, Rice JP.  SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study. Nucleic Acids Res. June 2010

6. Y. Gil; Ratnakar, V; Kim, J; Gonzalez-Calero, P; Groth, P; Moody, J; Deelman, E; WINGS: Intelligent Workflow-Based Design of Computational Experiments, Intelligent Systems, IEEE, 2010

7.Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Experiences with Resource Provisioning for Scientific Workflows Using Corral, Scientific Programming, 18:2, pp. 77-92, April 2010.

8.Robert Graves, Thomas Jordan, Scott Callaghan, Ewa Deelman, Edward Field, Gideon Juve, Carl Kesselman, Philip Maechling, Gaurang Mehta, Kevin Milner, David Okaya, Patrick Small, Karan Vahi, CyberShake: A Physics-Based Seismic Hazard Model for Southern California, Pure and Applied Geophysics, May 2010.

9.Vijay S. Kumar, Tahsin Kurc, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoonju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary Hall and Joel Saltz Parameterized specification, configuration and execution of data-intensive scientific workflows, Cluster Computing, Volume 13, Number 3 / September, 2010

10.Gideon Juve, Ewa Deelman, Scientific Workflows and Clouds, ACM Crossroads, 16:3, pp. 14-18, Spring 2010

11.Ewa Deelman, Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed Environments International Journal of High Performance Computing Applications Online First, published on December 4, 2009 as doi:10.1177/1094342009356432

12.Scott Callaghan, Ewa Deelman, Dan Gunter, Gideon Juve, Philip Maechling, Christopher Brooks, Karan Vahi, Kevin Milner, Robert Graves, Edward Field, David Okaya, Thomas Jordan, Scaling up workflow-based applications, Journal of Computer and System Sciences, In Press, Corrected Proof, Available online 22 November 2009, ISSN 0022-0000, DOI: 10.1016/j.jcss.2009.11.005.

13.Kevin Lee, Norman W. Paton, Rizos Sakellariou, Ewa Deelman, Alvaro A. A. Fernandes, Gaurang Mehta, Adaptive Workflow Processing and Execution in Pegasus, Concurrency Practice and Experience, volume 21, issue 16, 2009, pages 1965-1981.

14.Gurmeet Singh, Carl Kesselman, and Ewa Deelman, An End-to-End Framework for Provisioning-Based Resource and Application Management, IEEE Systems Journal, (3) 1, March 2009

15.Ewa Deelman, Dennis Gannon, Mathew Shields, Ian Taylor, Workflows and e-Science: An overview of workflow system features and capabilities, Future Generations of Computer Systems, July 2008.

16.Simon Miles, Paul Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, and Luc Moreau. Provenance: The bridge between experiments and data. Computing in Science and Engineering, 2008.

17.Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers, Examining the Challenges of Scientific Workflows, IEEE Computer, IEEE Computer, vol. 40, pp. 24-32, 2007.

18.Gurmeet Singh, Karan Vahi, Arun Ramakrishnan, Gaurang Mehta, Ewa Deelman, Henan Zhao, Rizos Sakellariou, Kent Blackburn, Duncan Brown, Stephen Fairhurst, David Meyers, G. Bruce Berriman , John Good, Daniel S. Katz, Optimizing Workflow Data Footprint, Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling, 2007

19.Jihie Kim, Ewa Deelman, Yolanda Gil, Gaurang Mehta, Varun Ratnakar. Provenance Trails in the Wings/Pegasus Workflow System, Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge, 2007.

20.Joseph C. Jacob, Daniel S. Katz, G. Bruce Berriman, John Good, Anastasia C. Laity, Ewa Deelman, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Thomas A. Prince, Roy Williams, Montage: a grid portal and software toolkit for science-grade astronomical image mosaicking, IJCSE, 2006

21.Ewa Deelman, Tevfik Kosar, Carl Kesselman and Miron Livny, What Makes Workflows Work in an Opportunistic Environment? Concurrency and Computation: Practice and Experience, Volume 18, Issue 10 , Pages 1187 – 1199.  2005

22.Gurmeet Singh, Carl Kesselman, Ewa Deelman,  Optimizing Grid-Based Workflow Execution, Journal of Grid Computing, Vol. 3, No. 3-4. (September 2005), pp. 201-219.

23.Ewa Deelman, Gurmeet Singh, Mei-Hui Su, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, G. Bruce Berriman, John Good, Anastasia Laity, Joseph C. Jacob, Daniel S. Katz, Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems, Scientific Programming Journal, Volume 13, Number 3, 2005

24.P. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C. Kesselman, J. Kim, G. Mehta, B. Mendenhall, T. Russ, G. Singh, M. Spraragen, G. Staples, K. Vahi, Simplifying Construction of Complex Workflows for Non-Expert Users of the Southern California Earthquake Center Community Modeling Environment, SIGMOD Record, Volume 34    Number 3,   September 2005

25.Jim Blythe, Ewa Deelman, and Yolanda Gil, Automatically Composed Workflows for Grid Environments Described with Varying Levels of Detail, IEEE Intelligent Systems, 19(4): 16-23 (2004)

26.Y. Gil, E. Deelman, J. Blythe, C. Kesselman, H.Tangmunarunkit.  Artificial intelligence and grids: workflow planning and beyond,  IEEE Intelligent Systems, Volume: 19 , Issue: 1 , Jan.-Feb. 2004, Pages:26 – 33

27.A. Chervenak, E. Deelman, C. Kesselman, B. Allcock, I. Foster, V. Nefedova, J. Lee, A. Sim, A. Shoshani, B. Drach, D. Williams, D. Middleton , High-performance remote access to climate simulation data: a challenge problem for data grid technologies, Parallel Computing Volume 29, Issue 10 (October 2003), Pages: 1335-1356, 2003.

28.E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A. Arbee, R. Cavanaugh, S. Koranda, Mapping Complex Workflows Onto Grid Environments, Journal of Grid Computing, Vol.1, No. 1, 2003., pp25-39.

29.R. Williams, B. Berriman, E. Deelman,  J. Good, J. Jacob, C. Kesselman, C. Lonsdale, S. Oliver, T. Prince. Multi-Wavelength Image Space: Another Grid-Enabled Science, Journal of Concurrency and Computation: Practice and Experience, Wiley, March 2003

30.V.S. Adve, R. Bagrodia, E. Deelman, Rizos Sakellariou. Compiler-Optimized Simulation of Large-Scale Applications on High Performance Architectures. Journal of Parallel and Distributed Computing, Vol. 62, No. 3, Mar 2002, pp. 393-426.

31.E. Deelman, B. K. Szymanski. Simulating Spatially Explicit Problems on High Performance Architectures,  Journal of Parallel and Distributed Computing, Vol. 62, No. 3, Mar 2002, pp. 446-467.

32.R. Bagrodia, E. Deelman, and T. Phan. Parallel Simulation of Large Scale Parallel Applications,   International Journal of High-Performance Computing Applications. Volume 15, Number, 1, Spring 2001.

33.V.S. Adve, R.Bagrodia, J.C. Browne, E. Deelman, A. Dube, E. Houstis, J.Rice, R. Sakellariou, D. Sundaram-Stukel, P. J. Teller, and M. K. Vernon. POEMS:  End-to-end Performance Design of Large Parallel Adaptive Computational Systems, IEEE Transactions on Software Engineering, vol.26, no.11 p. 1027-48, November 2000.

34.S. Prakash, E. Deelman, and R. Bagrodia. Asynchronous Parallel Simulation of Parallel Programs. IEEE Transactions on Software Engineering, 26(5), May 2000.

35.T. Caraco,  G. Gardner,  W. Maniatty,  E. Deelman,  and B. K. Szymanski, Lyme  disease: self-regulation and pathogen invasion.  Journal of Theoretical Biology, 1998 Aug 21, 193(4):561-75.


Conference Papers

  1. 1.Mats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan, Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures, Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), December 2011.

  2. 2.Ashish Nagavaram, Gagan Agrawal, Michael Freitas, Gaurang Mehta, Rajiv Mayani, Ewa Deelman, A Cloud‐based Dynamic Workflow for Mass Spectrometry Data Analysis,, Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), December 2011.

  3. 3.Gideon Juve, Ewa Deelman Automating Application Deployment in Infrastructure Clouds, 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom) 2011.

  4. 4.Mats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan, Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures,  Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), December 2011.

  5. 5.Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gaurang Mehta, Fabio Silva, Karan Vahi, Failure Prediction and Localization in Large Scientific Workflows,  6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), Seattle, Washington, November 14th, 2011.

  6. 6.Dan Gunter, Christopher H. Brooks, Ewa Deelman, Monte Good, Gideon Juve, Gaurang Mehta, Priscilla Moaes, Taghrid Samak, Fabio Silva, Martin Swany, Karan Vahi, Online Workflow Management and Performance Analysis with STAMPEDE, Proceedings of the 7th International Conference on Network and Service Management (CNSM 2011), 2011.

  7. 7.Taghrid Samak, Dan Gunter, Ewa Deelman, Gideon Juve, Gaurang Mehta, Fabio Silva, Karan Vahi, Online Fault and Anomaly Detection for Large-Scale Scientific Workflows, 13th IEEE International Conference on High Performance Computing and Communications (HPCC 2011), 2011.

  8. 8.BTS: Resource capacity estimate for time-targeted science workflows, Journal of Parallel and Distributed Computing, Eun-Kyu Byun, Yang-Suk Kee, Jin-Soo Kim, Ewa Deelman, Seungryoul Maeng, Volume 71, Issue 6, Special Issue on Cloud Computing, June 2011, Pages 848-862, ISSN 0743-7315, DOI: 10.1016/j.jpdc.2011.01.008.

  9. 9.Ten years of software sustainability at the Infrared Processing and Analysis Center, G. Bruce Berriman, John Good, Ewa Deelman and Anastasia Alexov, Phil. Trans. R. Soc. A 2011 369, 3384-3397, doi: 10.1098/rsta.2011.0136

  10. 10.Wrangler: Virtual Cluster Provisioning for the Cloud, Gideon Juve and Ewa Deelman, short paper, Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC'11), 2011.

  11. 11.Experiences Using Cloud Computing for A Scientific Workflow Application, Jens-S. Vöckler, Gideon Juve, Ewa Deelman, Mats Rynge, G. Bruce Berriman, Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011), 2011.

  12. 12.G. Bruce Berriman, Gideon Juve, Ewa Deelman, Moira Regelson, Peter Plavchan, The Application of Cloud Computing to Astronomy: A Study of Cost and Performance, Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010), December 2010.

  13. 13.Mirko Sonntag Dimka Karastoyanova and Ewa Deelman, Bridging The Gap Between Business And Scientific Workflows, e-Science 2010, Brisbane, Australia

  14. 14.Mirko Sonntag Dimka Karastoyanova and Ewa Deelman, BPEL4Pegasus: Combining Business and Scientific Workflows, International Conference on Service-Oriented Computing (ICSOC), San Francisco, California, December 2010.

  15. 15.Rizos Sakellariou, Henan Zhao, Ewa Deelman. Mapping Workflows on Grid Resources: Experiments with the Montage Workflow. In Grids, P2P and Services Computing, Springer, 2010, pp. 119-132.

  16. 16.G. Bruce Berriman, Ewa Deelman, Paul Groth, and Gideon Juve, The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy, 2010.

  17. 17.Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Bruce Berriman, Benjamin P. Berman, Phil Maechling, Data Sharing Options for Scientific Workflows on Amazon EC2, 22nd IEEE/ACM Conference on Supercomputing (SC10), New Orleans, Louisiana, November 2010

  18. 18.Paul Groth, Ewa Deelman, Gideon Juve, Gaurang Mehta and Bruce Berriman, “A Pipeline-Centric Provenance Model”, WORKS 2009

  19. 19.Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Bruce Berriman, Benjamin P. Berman,  Philip Maechling Scientific Workflow Applications on Amazon EC2, Cloud-based Services and Applications Workshop in Conjunction with e-Science 2009

  20. 20.Philip Maechling, Ewa Deelman, Yifeng Cui: Implementing Software Acceptance Tests as Scientific Workflows. PDPTA 2009: 317-323

  21. 21.Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz: An integrated framework for performance-based optimization of scientific workflows. HPDC 2009: 177-186

  22. 22.Rizos Sakellariou and Henan Zhao and Ewa Deelman, Mapping Workflows on Grid Resources: Experiments with the Montage Workflow, CoreGrid 2009

  23. 23.R. Grave, S. Callaghan, E. Deelman, E. Field, N. Gupta, T.H. Jordan, G. Juve, C. Kesselman, P. Maechling, G. Mehta, D. Meyers, D. Okaya, K. Vahi, Physics Based Probabilistic Seismic Hazard Calculations for Southern California., 14th World Conference on Earthquake Engineering: Innovation Practice Safety. 2008 

  24. 24.Scott Callaghan, Philip Maechling, Ewa Deelman, Karan Vahi, Gaurang Mehta, Gideon Juve, Kevin Milner, Robert Graves, Edward Field, David Okaya, Dan Gunter, Keith Beattie, Thomas Jordan, “Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake”, Fourth IEEE International Conference on e-Science (e-Science 2008), 10-12 December 2008 in Indianapolis, Indiana, USA,

  25. 25.Gideon Juve, Ewa Deelman, “Resource Provisioning Options for Large-Scale Scientific Workflows”, Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 10 December 2008 in Indianapolis, Indiana, USA

  26. 26.Christina Hoffa, Gaurang Mehta, Timothy Freeman, Ewa Deelman, Kate Keahey, Bruce Berriman, John Good, “On the Use of Cloud Computing for Scientific Workflows”, 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 10 December 2008 in Indianapolis, Indiana, USA

  27. 27.Ewa Deelman, Gurmeet Singh, Miron Livny, Bruce Berriman, John Good. “The Cost of Doing Science on the Cloud: The Montage Example” Proceeding of Super Computing 2008, Austin , Texas, November 2008

  28. 28.Shishir Bharathi, Ann Chervenak, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, Karan Vahi, “Characterization of Scientific Workflows”, 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08), Austin, TX, November, 2008

  29. 29.Yang-Suk Kee, Ewa Deelman, Karan Vahi, Eun-kyu Byun, Jin-Soo Kim, “Pegasus on Virtual Grid: A Case Study of Workflow Planning over Captive Resources”,  3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08), Austin, TX, November 2008

  30. 30.Ewa Deelman, Ann Chervenak “Data Management Challenges of Large-Scale, Data-Intensive Scientific workflows” in  WSES 08: 3rd International Workshop on Workflow Systems in e-Science, in conjunction with CCGrid 2008, May 2008, Lyon, France

  31. 31.K.Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta “Adaptive Workflow Processing and Execution in Pegasus”,  3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08), in Proceedings of the Third International Conference on Grid and Pervasive Computing Symposia/Workshops, Pages 99-106, May 25-28 2008, Kunming, China

  32. 32.Vijay Kumar, Mary Hall, Jihie Kim, Yolanda Gil, Tahsin Kurc, Ewa Deelman and Joel Saltz, “Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging”, In Proc. of the Workshop on Next Generation Software, held in conjuction with IPDPS '08, April, 2008

  33. 33.Gurmeet Singh, Mei-Hui Su, Karan Vahi, Ewa Deelman, Bruce Berriman, John Good, Daniel S. Katz, and Gaurang Mehta, "Workflow Task Clustering for Best Effort Systems with Pegasus", Mardi Gras Conference, Baton Rouge, LA,  January 2008

  34. 34.Simon Miles, Ewa Deelman, Paul Groth, Karan Vahi, Gaurang Mehta, Luc Moreau. Connecting Scientific Data to Scientific Experiments with Provenance, Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007) Bangalore, India. , 2007

  35. 35.Ann Chervenak, Ewa Deelman, Miron Livny, Mei-Hui Su, Rob Schuler, Shishir Bharathi, Gaurang Mehta, Karan Vahi,  Data Placement for Scientific Applications in Distributed Environments, Proceedings of Grid Conference 2007, Austin, Texas, September 2007.

  36. 36.Gurmeet Singh, Carl Kesselman, Ewa Deelman, Adaptive Pricing for Resource Reservations, 8th IEEE/ACM International Conference on Grid Computing (Grid 2007), Austin, Texas, September 2007.

  37. 37.Yolanda Gil, Varun Ratnakar, Ewa Deelman, Gaurang Mehta, and Jihie Kim. Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows, Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI), Vancouver, British Columbia, Canada, July 22-26, 2007.

  38. 38.Nandita Mandal, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, and Karan Vahi, Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example, Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS'07), in conjunction with the IEEE International Symposium on High Performance Distributed Computing Monterrey, CA, June 2007.

  39. 39.Yolanda Gil, Pedro A. Gonzalez-Calero, Ewa Deelman. On the Black Art of Designing Computational Workflows, Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS'07), in conjunction with the IEEE International Symposium on High Performance Distributed Computing Monterrey, CA, June 2007.

  40. 40.Gurmeet Singh, Carl Kesselman, Ewa Deelman, Adaptive Pricing for Resource Reservations The 8th IEEE/ACM International Conference on Grid Computing (Grid 2007)

  41. 41.Gurmeet Singh, Carl Kesselman, Ewa Deelman,  A Provisioning Model and its Comparison with Best-Effort for Performance-Cost Optimization in Grids, in IEEE International Symposium on High Performance Distributed Computing (HPDC) 2007

  42. 42.Arun Ramakrishnan, Gurmeet Singh, Henan Zhao, Ewa Deelman, Rizos Sakellariou, K. Vahi, K. Blackburn, D. Meyers, and M. Samidi,  Scheduling Data -Intensive Workflows onto Storage-Constrained Distributed Resources, in Seventh IEEE International Symposium on Cluster Computing and the Grid — CCGrid 2007

  43. 43.Ewa Deelman and Yolanda Gil, Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges, Proceedings of Workflows in e-Science, Amsterdam, The Netherlands, 2006.

  44. 44.E. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, and L. Zhao,  Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example, Proceedings of e-Science, Amsterdam, The Netherlands, 2006. (best paper)

  45. 45.G. Singh, C. Kesselman, and E. Deelman, Application-level Resource Provisioning on the Grid, Proceedings of e-Science, Amsterdam, The Netherlands, 2006.

  46. 46.V. Nefedova, R. Jacob, I. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M.-H. Su, and K. Vahi, Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System, Proceedings of e-Science, Amsterdam, The Netherlands, 2006.

  47. 47.A. Lathers, M.-H. Su, A. Kulungowski, A. W. Lin, G. Mehta, S. T. Peltier, Ewa Deelman, and M. H. Ellisman,  Enabling Parallel Scientific Applications with Workflow Tools, Proceedings of Challenges of Large Applications in Distributed Environments (CLADE), Paris, 2006.

  48. 48.Y. Gil, V. Ratnakar, and E. Deelman, Metadata Catalogs with Semantic Representation, Proceedings of International Provenance Annotation Workshop (IPAW-06), Chicago, IL, 2006.

  49. 49.J. Muench, H. Francoeur, D. Okaya, Y. Cui, P. Maechling, E. Deelman, G. Mehta, R. Moore, and T. Jordan, SCEC Earthworks Science Gateway: Widening SCEC Community Access to the TeraGrid. TeraGrid 2006 Conference, 2006.

  50. 50.Yolanda Gil, Varun Ratnakar, and Ewa Deelman. Virtual Metadata Catalogs: Augmenting Metadata Catalogs with Semantic Representations, Short paper at the Fourth International Semantic Web Conference (ISWC-05), Galway, Ireland, November 7-10, 2005.

  51. 51.E. Deelman, A. Galstyan, Y. Gil, M. Hall, K. Lerman, A. Nakano, P. Vashista, and J. Saltz,  A Systematic Approach to Composing and Optimizing Application Workflows, Proceedings of Workshop on Patterns in High Performance Computing, Urbana-Champaign, 2005.

  52. 52.Daniel S. Katz, Joseph C. Jacob, G. Bruce Berriman, John Good, Anastasia C. Laity, Ewa Deelman, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Thomas A. Prince, A Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid. ICPP Workshops 2005: 85-94

  53. 53.Seung-Hye Jang, Valerie Taylor, Xingfu Wu, Mieke Prajugo, Ewa Deelman, Gaurang Mehta, and Karan Vahi, Performance Prediction-based versus Load-based Site Selection: Quantifying the Difference, the 18th International Conference on Parallel and Distributed Computing Systems (PDCS-2005), Las Vegas, Nevada, 12-14 September 2005.

  54. 54.Jim Blythe, Sonal Jain, Ewa Deelman, Karan Vahi, Yolanda Gil, Anirban Mandal, Ken Kennedy, Task Scheduling Strategies for Workflow-based Applications in Grids, IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2005).

  55. 55.Gurmeet Singh, Ewa Deelman, Gaurang Mehta, Karan Vahi, Mei-Hui Su, G. Bruce Berriman, John Good, Joseph C. Jacob, Daniel S. Katz, Albert Lazzarini, Kent Blackburn, and Scott Koranda, The Pegasus Portal: Web Based Grid Computing, The 20th Annual ACM Symposium on Applied Computing, SAC 2005.

  56. 56.Jim Blythe, Ewa Deelman, Yolanda Gil. Planning and Metadata on the Computational Grid, In AAAI Spring Symposium on Semantic Web Services, Palo Alto, California, USA, 2004.

  57. 57.Rattapoom Tuchinda, Snehal Thakkar, Yolanda Gil, and Ewa Deelman, Artemis: Integrating Scientific Data on the Grid,  In the proceedings of the Sixteenth Innovative Applications of Artificial Intelligence, San Jose, CA, July 2004

  58. 58.Ewa Deelman, Gurmeet Singh, Malcolm P. Atkinson, Ann Chervenak, Neil P Chue Hong, Carl Kesselman, Sonal Patil, Laura Pearlman, Mei-Hui Su, Grid-Based Metadata Services, SSDBM04, Santorini, Greece, June 2004

  59. 59.I. Foster and others in the iVDGL project, The Grid2003 Production Grid: Principles and Practice, High Performance Distributed Computing, 2004. HPDC-13 2004.

  60. 60.J. C. Jacob, D. S. Katz, T. Prince, G. B. Berriman, J. C. Good, A. C. Laity, E. Deelman, G. Singh, and M.-H. Su, The Montage Architecture for Grid-Enabled Science Processing of Large, Distributed Datasets, Proceedings of the Earth Science Technology Conference (ESTC) 2004, June 2004.

  61. 61.G. B. Berriman, E. Deelman, J. Good, J. Jacob, D. S. Katz, C. Kesselman, A. Laity, T. A. Prince, G. Singh, and M. Su, Montage: a Grid Enabled Engine for Delivering Custom Science-Grade Image Mosaics on Demand, Proceedings of the SPIE Conference on Astronomical Telescopes and Instrumentation, June 2004.

  62. 62.Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Sonal Patil, Mei-Hui Su, Karan Vahi, Miron Livny, Pegasus: Mapping Scientific Workflows onto the Grid, Across Grids Conference 2004, Nicosia, Cyprus.

  63. 63.Jim Blythe, Ewa Deelman, Yolanda Gil. Planning and Metadata on the Computational Grid, In AAAI Spring Symposium on Semantic Web Services, 2004.

  64. 64.Ewa Deelman, Raymond Plante, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Gretchen Greene, Robert Hanisch, Niall Gaffney, Antonio Volpicelli, James Annis, Vijay Sekhri, Tamas Budavari, Maria Nieto-Santisteban, William O’Mullane, David Bohlender, Tom McGlynn, Arnold Rots, Olga Pevunova, Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory, Proceedings of SC 2003.

  65. 65.G. B. Berriman , J. C. Good,  A. C. Laity, A. Bergou,  J. Jacob, D. S. Katz, E. Deelman, C. Kesselman, G. Singh, M.-H. Su, R. Williams, Montage A Grid Enabled Image Mosaic Service for the National Virtual Observatory,  ADASS XIII, ASP Conference Series Vol XXX, F Ochsenbein M Allen and D Egret eds, 2003.

  66. 66.Gurmeet Singh, Shishir Bharathi,Ann Chervenak, Ewa Deelman, Carl Kesselman, Mary Manohar, Sonal Patil, and Laura Pearlman. A Metadata Catalog Service for Data Intensive Applications, Proceedings of  SC 2003.

  67. 67.Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Scott Koranda, Albert Lazzarini, Gaurang Mehta, Maria Alessandra Papa, Karan Vahi, Pegasus and the Pulsar Search: From Metadata to Execution on the Grid., Applications Grid Workshop, PPAM 2003, Czestochowa, Poland 2003.

  68. 68.J. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, K. Vahi, The Role of Planning in Grid Computing, ICAPS, 2003

  69. 69.J. Blythe, E. Deelman, Y. Gil, C. Kesselman, Transparent Grid Computing: a Knowledge-Based Approach. IAAI, 2003.

  70. 70.A. Chervenak, E. Deelman, I. Foster, L. Guy, W. Hoschek, A. Iamnitchi, C. Kesselman, P. Kunst, M. Ripeanu, B, Schwartzkopf, H, Stockinger, K. Stockinger, B. Tierney. Giggle: A Framework for Constructing Sclable Replica Location Services. Proceedings of Supercomputing 2002 (SC2002),November 2002.

  71. 71.E. Deelman, C. Kesselman, G. Mehta, L.  Meshkat, L. Pearlman, K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, S. Koranda. GriPhyN and LIGO, building a virtual data grid for gravitational wave scientists. High Performance Distributed Computing, 2002. HPDC-11 2002. Page(s): 225 -234

  72. 72.E. Deelman, C. Kesselman, S. Koranda, K. Blackburn A. Lazzarini, and R. Williams.  Applications of Virtual Data in the LIGO Experiment, Proceedings of the International Conference on Parallel Processing and Applied Mathematics, Naleczow, Poland, September 2001,  Lecture Notes in Computer Science. Vol.2328; Berlin, Germany : Springer-Verlag, 2002, xix+915 p. (23-34)

  73. 73.W. Allcock, I. Foster, V. Nefedova, A. Chervenak, E. Deelman, C. Kesselman, J. Lee, A. Sim, A. Shoshani, B. Drach, D. Williams. High-Performance Remote Access to Climate Simulation Data: A Challenge Problem for Data Grid Technologies. Proceedings of SC 2001, Denver, CO, November 2001.

  74. 74.E. Deelman, R. Bagrodia, R. Sakellariou, V. Adve.  Improving Lookahead in Parallel Discrete Event Simulations of Large-Scale Applications Using Compiler Analysis. Proceedings 15th Workshop on Parallel and Distributed Simulation p. 5-13, Lake Arrowhead, CA, USA; 15-18 May 2001. (best paper)

  75. 75.E. Deelman, C. Kesselman, R.D. Williams, A. Lazzarini, T.A. Prince, J. Romano, B. Allen,  A Virtual Data Grid for LIGO, Lecture Notes in Computer Science 2110 (2001) 3,  also Proc. HPCN 2001, Amsterdam, June 2001.

  76. 76.V. S. Adve, R. Bagrodia, E. Deelman, T. Phan, and R. Sakellariou, Compiler-Supported Simulation of Highly Scalable Parallel Applications, Proceedings of SC'99, Portland, OR, Nov 13 - 19, 1999.

  77. 77.R. Bagrodia, E. Deelman, S. Docy, T. Phan; Performance Prediction of Large Parallel Applications Using Parallel Simulations. ACM SIGPLAN 1999 Symposium on Principles and Practice of Parallel Programming, Atlanta, Georgia, May 4-6, 1999.

  78. 78.E. Deelman, A. Dube, A. Hoisie, Y. Luo, R. Oliver, D. Sundaram-Stukel, H. Wasserman, V. S. Adve, R. Bagrodia, J. C. Browne, E. Houstis, O. Lubeck, J. Rice, P. Teller, M. K. Vernon;  POEMS: End-to-end Performance Design of Large Parallel Adaptive Computational Systems. Proceedings of the First International Workshop on Software and Performance '98 - WOSP '98, Santa Fe, New Mexico, October 12-16, 1998. 

  79. 79.E. Deelman, and B.K. Szymanski, Dynamic load balancing in parallel discrete event  simulation for spatially explicit problems. Proceedings of the Twelfth Workshop on Parallel and Distributed Simulation, PADS '98, Banff, CA, May 26-29, 1998.

  80. 80.E. Deelman and B.K. Szymanski. System Knowledge Acquisition in Parallel Discrete Event Simulation. Proceedings of the 1997 IEEE International Conference on Systems Man and Cybernetics, Orlando, FL, October 12-15, 1997

  81. 81.E. Deelman and B.K. Szymanski. Continuously Monitored Global Virtual Time. Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV, June 30- July 3, 1997.

  82. 82.E. Deelman and B.K. Szymanski. Breadth-First Rollback in Spatially Explicit Simulations. Proceedings of the 11th Workshop on Parallel and Distributed Simulation, PADS'97, Lockenhaus, Austria, June 10-13, 1997.

  83. 83.E. Deelman, B.K. Szymanski and T. Caraco. Simulating Lyme Disease Using Parallel Discrete Event Simulation. Proceedings of the 1996 Winter Simulation Conference, San Diego, CA, December 8-11, 1996.

  84. 84.B.K. Szymanski, E. Deelman, J. Flaherty, C. Norton, J. Teresco and L. Ziantz. Parallel Scientific Computing on the IBM SP2 at SCOREC-Rensselaer Polytechnic Institute. Proceedings of SUP'EUR 96, Krakow, Poland, September 8-11, 1996. 

  85. 85.E. Deelman, T. Caraco and B.K. Szymanski.  Parallel Discrete Event Simulation of Lyme Disease. Biocomputing: Proc. of the 1996 Pacific Symposium, Hawaii, January 3-6, 1996.

  86. 86.E. Deelman, W. K. Kaplow, B. K. Szymanski, P. Tannenbaum and L. Ziantz. Integrating Data and Task Parallelism in Scientific Programs. Proceeding of the Workshop on Languages, Compilers and Run-Time Systems for Parallel Programming, Kluwer Academic Publishers, Boston, 1995.


Book Chapters

1.Raphael Bolze and Ewa Deelman, Exploiting the Cloud of Computing Environments: An Application’s perspective, Cloud Computing and Software Services: Theory and Techniques, Editors Syed A. Ahson and Mohammad Ilyas, CRC Press, July 2010

2.Ewa Deelman, Bruce Berriman, Ann Chervenak, Oscar Corcho, Paul Groth, Luc Moreau, Metadata and provenance management, in Scientific Data Management: Challenges, Technology, and Deployment, Editors - Arie Shoshani, Doron Rotem, Series: Chapman & Hall/CRC Computational Science, 2009

3.Bertram Ludascher, Ilkay Altintas, Shawn Bowers, Julian Cummings,Terence Critchlow, Ewa Deelman, David De Roure, Juliana Freire, Carole Goble, Matthew Jones, Scott Klasky, Timothy McPhillips,Norbert Podhorszki, Claudio Silva, Ian Taylor, Mladen Vouk, Scientific Process Automation and Workflow Management, in Scientific Data Management: Challenges, Technology, and Deployment, Editors - Arie Shoshani, Doron Rotem, Series: Chapman & Hall/CRC Computational Science, 2009

4.Ewa Deelman, Miron Livny, Gaurang Mehta, Andy Pavlo, Gurmeet Singh, Mei-Hui Su, Karan Vahi, R. Kent Wenger, Pegasus and DAGMan From Concept to Execution: Mapping Scientific Workflows onto Today’s Cyberinfrastructure, in "High Performance Computing and Grids in Action" (L. Grandinetti Editor), IOS Press, Amsterdam, volume 16 in the series "Advances in Parallel Computing". March 2008

5.G. Bruce Berriman, Ewa Deelman, John Good, Joseph C. Jacob, Daniel S. Katz, Anastasia C. Laity, Thomas A. Prince, Gurmeet Singh, and Mei-Hui Su, Generating Complex Astronomy Workflows, in Workflows for e-Science, 2007

6.Philip Maechling, Ewa Deelman, Li Zhao, Robert Graves, Gaurang Mehta, Nitin Gupta, John Mehringer, Carl Kesselman, Scott Callaghan, David Okaya, Hunter Francoeur, Vipin Gupta, Yifeng Cui, Karan Vahi, Thomas Jordan, and Edward Field, SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations, in Workflows for e-Science, 2007

7.Ewa Deelman, Gaurang Mehta, Gurmeet Singh, Mei-Hui Su, and Karan Vahi, Pegasus: Mapping Large-Scale Workflows to Distributed Resources, in Workflows for e-Science, 2007

8.Ewa Deelman, Looking into the Future of Workflows: The Challenges Ahead, in Workflows for e-Science, 2007

9.Craig A. Lee, B. Scott Michel, Ewa Deelman and Jim Blythe, From Event-Driven Workflows Towards a Posteriori Computing, In Future Generation Grids as part of the Springer LNCS series, Getov, Vladimir; Laforenza, Domenico; Reinefeld, Alexander (Eds.) , 2006.

10.D.S. Katz, N. Anagnostou, G.B. Berriman, E. Deelman, J. Good, J.C. Jacob, C. Kesselman, A. Laity, T.A. Prince, G.Singh, M.-H. Su, and R. Williams Astronomical Image Mosaicking on a Grid: Initial Experiences in Engineering the Grid-Status and Perspectives, B. Di. Martino, J. Dongarra, A. Hoisie, L. Yand, and H. Zima eds. Nova, 2005

11.Ewa Deelman, James Blythe, Yolanda Gil, and Carl Kesselman, Workflow Management in GriPhyN, in Grid Resource Management, J. Nabrzyski, J. Schopf, and J. Weglarz editors, Kluwer,  2003.


Technical Reports

1.Ann Chervenak, Ewa Deelman, Carl Kesselman, Laura Pearlman, Gurmeet Singh, A Metadata Catalog Service for Data Intensive Applications, GriPhyN technical report, 2002-11

2.Leila Meshkat, William Allcock, Ewa Deelman, Carl Kesselman, Fault Location in Grids Using Fault Location in Grids Using Bayesian Belief Networks. GriPhyN technical report, 2002-8.

3.K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, E. Deelman, C. Kesselman, G. Mehta, L. Meshkat, L. Pearlman, B. Allen, S. Koranda, LIGO Prototype,  GriPhyN technical report 2001-18.

4.E. Deelman, C. Kesselman, G. Mehta, Transformation Catalog Design for GriPhyN, Prototype of Transformation Catalog Schema.GriPhyN technical report 2001-17.

5.E. Deelman, I. Foster, C. Kesselman, M. Livny, Representing Virtual Data: A Catalog Architecture for Location and Materialization Transparency, GriPhyN technical report 2001-13.

6.LIGO's Virtual Data Requirements, B. Allen, E. Deelman, C. Kesselman, A. Lazzarini, T. Prince, J. Romano, R. Williams, GriPhyN technical report 2001-6 also LIGO technical report T000135-00-D.

  1. 7.Continuously Monitored Global Virtual Time in Parallel Discrete Event Simulation., E. Deelman and B.K. Szymanski.  Department of Computer Science Technical Report 96-18, Rensselaer Polytechnic Institute, 1996.