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Capturing Data Analysis Expertise with Visualization in Workflows. Kale, D.; Di, S.; Liu, Y.; and Gil, Y. In AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data, Arlington, Virginia, 2013.
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The Democratization of Semantic Properties: An Analysis of Semantic Wikis. Gil, Y.; Knight, A.; Zhang, K.; Zhang, L.; Ratnakar, V.; and Sethi, R. In Seventh IEEE International Conference on Semantic Computing (ICSC), Irvine, CA, 2013.
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Social Knowledge Collection. Gil, Y. In Handbook of Human Computation. Springer, 2013.
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Scientific Workflows: The Key to Convergence?. McCann, M. P.; Hofmann, A. F.; Harmon, T. C.; and Gil, Y. 2012. Ocean Sciences Meeting, Salt Lake City, Utah.
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Final Report of the 2012 NSF Workshop on Discovery Informatics. Gil, Y.; and Hirsh, H. 2012. National Science Foundation, Arlington, VA..
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Organic Data Sharing: A Novel Approach to Scientific Data Sharing. Gil, Y.; Ratnakar, V.; and Hanson, P. In Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC), Boston, MA, 2012.
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Requirements for Provenance on the Web. Groth, P.; Gil, Y.; Cheney, J.; and Miles, S. International Journal of Digital Curation, 7(1). 2012.
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Linked Data for Network Science. Groth, P.; and Gil, Y. In First International Workshop on Linked Science at the International Semantic Web Conference (ISWC), Bonn, Germany, 2011.
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Goal-Directed Meta-Control for Integrated Procedure Learning. Kim, J.; Myers, K.; Gervasio, M.; and Gil, Y. In Metareasoning: Thinking about Thinking. MIT Press, 2011.
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A Formal Framework for Combining Natural Instruction and Demonstration for End-User Programming. Fritz, C.; and Gil, Y. In Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA, 2011.
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Wings: Intelligent Workflow-Based Design of Computational Experiments. Gil, Y.; Ratnakar, V.; Kim, J.; Gonzalez-Calero, P. A.; Groth, P.; Moody, J.; and Deelman, E. IEEE Intelligent Systems, 26(1). 2011.
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Provenance Requirements for the Next Version of RDF. Zhao, J.; Bizer, C.; Gil, Y.; Missier, P.; and Sahoo, S. 2010. W3C Workshop on RDF Next Steps.
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Human Tutorial Instruction in the Raw. Gil, Y. ACM Transactions on Interactive Intelligent Systems, . 2013. Forthcoming.
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Mapping Semantic Workflows to Alternative Workflow Execution Engines. Gil, Y. In Seventh IEEE International Conference on Semantic Computing (ICSC), Irvine, CA, 2013.
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Towards Task-Centered Network Models through Semantic Workflows. Gil, Y. In Proceedings of the IEEE Conference on Intelligence and Security Informatics (ISI), Seattle, WA, 2013.
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Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail. Gil, Y.; Deelman, E.; Demir, I.; Duffy, C.; Pierce, M.; Marru, S.; and Wiener, G. 2012. American Geophysical Union Fall Meeting, San Francisco, CA.
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Reusing Workflow Fragments Across Multiple Data Domains. Sethi, R. J.; Jo, H.; and Gil, Y. In Proceedings of the Seventh Workshop on Workflows in Support of Large-Scale Science (WORKS'12), held in conjunction with SC 2012, Salt Lake City, Utah, 2012.
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Discovery Informatics: AI Opportunities in Scientific Discovery. Gil, Y.; and Hirsh, H. In AAAI Fall Symposium on Discovery Informatics: The Role of AI Research in Innovating Scientific Processes, Arlington, Virginia, 2012.
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A Semantic Framework for Automatic Generation of Computational Workflows Using Distributed Data and Component Catalogs. Gil, Y.; Gonzalez-Calero, P. A.; Kim, J.; Moody, J.; and Ratnakar, V. Journal of Experimental and Theoretical Artificial Intelligence, 23(4). 2011.
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The Cognitive Atlas: Towards a knowledge foundation for cognitive neuroscience. Poldrack, R. A.; Kittur, A.; Kalar, D.; Miller, E.; Seppa, C.; Gil, Y.; Parker, D. S.; Sabb, F. W.; and Bilder, R. M. Frontiers in Neuroinformatics, 5(17). 2011.
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Retrieval of Semantic Workflows with Knowledge Intensive Similarity Metrics. Bergmann, R.; and Gil, Y. In Proceedings of the Nineteenth International Conference on Case Based Reasoning (ICCBR), Greenwich, London, 2011.
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Want World Domination? Play Risk! Matching To-Do items with How-Tos from the Web. Vrandecic, D.; Gil, Y.; and Ratnakar, V. In Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA, 2011.
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Shortipedia: Aggregating and Curating Semantic Web Data. Vrandecic, D.; Ratnakar, V.; Kroetzsch, M.; and Gil, Y. In Semantic Web Challenge at the International Semantic Web Conference (ISWC), Shanghai, China, 2010.
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Parameterized Specification, Configuration, and Execution of Data-Intensive Scientific Workflows. Kumar, V.; Kurc, T.; Ratnakar, V.; Kim, J.; Mehta, G.; Vahi, K.; Nelson, Y. L.; Sadayappan, P.; Deelman, E.; Gil, Y.; Hall, M.; and Saltz, J. Cluster Computing Journal, 13(3):315-333. 2010.
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Determining the Trustworthiness of New Electronic Contracts. Groth, P. T.; Miles, S.; Modgil, S.; Oren, N.; Luck, M.; and Gil, Y. In Proceedings of the Tenth Annual Workshop on Engineering Societies in the Agents World (ESAW), page 132-147, Utrecht, The Netherlands, 2009.
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An Integrated Framework for Performance-Based Optimization of Scientific Workflows. Kumar, V. S.; Sadayappan, P.; Mehta, G.; Vahi, K.; Deelman, E.; Ratnakar, V.; Kim, J.; Gil, Y.; Hall, M. W.; Kuŗc, T. M.; and Saltz, J. H. In Proceedings of the Eighteenth ACM International Symposium on High Performance Distributed Computing (HPDC), page 177-186, Garching, Germany, 2009.
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Scientific Software as Workflows: From Discovery to Distribution. Woollard, D.; Medvidovic, N.; Gil, Y.; and Mattmann, C. IEEE Software, 25(4):37-43. 2008.
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Examining the Challenges of Scientific Workflows. Gil, Y.; Deelman, E.; Ellisman, M. H.; Fahringer, T.; Fox, G.; Gannon, D.; Goble, C. A.; Livny, M.; Moreau, L.; and Myers, J. IEEE Computer, 40(12):24-32. 2007.
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Towards Privacy Aware Data Analysis Workflows for e-Science. Cheung, W.; and Gil, Y. In Proceedings of the AAAI Workshop on Semantic e-Science (SeS2007), held in conjunction with the Twenty-Second Conference of the Association for the Advancement of Artificial Intelligence (AAAI), Vancouver, British Columbia, Canada, 2007.
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Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges. Deelman, E.; and Gil, Y. In Proceedings of the Workshop on Scientific Workflows and Business Workflow Standards in e-Science of the Second International Conference on e-Science and Grid Technologies (e-Science), Amsterdam, The Netherlands, 2006.
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Towards Content Trust of Web Resources. Gil, Y.; and Artz, D. Journal of Web Semantics, 5(4). 2007.
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Improving the design of intelligent acquisition interfaces for collecting world knowledge from web contributors. Chklovski, T.; and Gil, Y. In Proceedings of the Third International Conference on Knowledge Capture (K-CAP), page 35-42, Banff, Alberta, Canada, 2005.
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Task scheduling strategies for workflow-based applications in grids. Blythe, J.; Jain, S.; Deelman, E.; Gil, Y.; Vahi, K.; Mandal, A.; and Kennedy, K. In Proceedings of the Fifth International Symposium on Cluster Computing and the Grid (CCGrid), page 759-767, Cardiff, UK, 2005.
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Automatically Composed Workflows for Grid Environments. Blythe, J.; Deelman, E.; and Gil, Y. IEEE Intelligent Systems, 19(4):16-23. 2004.
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An intelligent assistant for interactive workflow composition. Kim, J.; Spraragen, M.; and Gil, Y. In Proceedings of the ACM International Conference on Intelligent User Interfaces, page 125-131, Funchal, Madeira, Portugal, 2004.
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Transparent Grid Computing: A Knowledge-Based Approach. Blythe, J.; Deelman, E.; Gil, Y.; and Kesselman, C. In Proceedings of the Fifteenth Conference on Innovative Applications of Artificial Intelligence (IAAI), page 57-64, Acapulco, Mexico, 2003.
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TRELLIS: An Interactive Tool for Capturing Information Analysis and Decision Making. Gil, Y.; and Ratnakar, V. In Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW), page 37-42, Siguenza, Spain, 2002.
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A Comparison of (Semantic) Markup Languages. Gil, Y.; and Ratnakar, V. In Proceedings of the Fifteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS), page 413-418, Pensacola Beach, FL, 2002.
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PHOSPHORUS: a task-based agent matchmaker. Gil, Y.; and Ramachandran, S. In Proceedings of the Fifth International Conference on Autonomous Agents, page 110-111, Montreal, Canada, 2001.
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User studies of an interdependency-based interface for acquiring problem-solving knowledge. Kim, J.; and Gil, Y. In IUI, page 165-168, 2000.
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Explicit Representations of Problem-Solving Strategies to Support Knowledge Acquisition. Gil, Y.; and Melz, E. In Proceedings of the Thirteenth National Conference on Artificial Intelligence (AAAI), page 469-476, Portland, OR, 1996.
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Towards Method-Independent Knowledge Acquisition. Paris, C.; and Gil, Y. Knowledge Acquisition, 6(2). 1994.
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A Domain-Independent Framework for Effective Experimentation in Planning. Gil, Y. In Proceedings of the Eight International Conference on Machine Learning (ICML), page 13-17, Evanston, IL, 1991.
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Common Motifs in Scientific Workflows: An Empirical Analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. Future Generation Computer Systems, . 2013.
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Detecting Common Scientific Workflow Fragments Using Templates and Execution Provenance. Garijo, D.; Corcho, O.; and Gil, Y. In Seventh ACM International Conference on Knowledge Capture (K-CAP), Banff, Canada, 2013.
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An Initial Analysis of Semantic Wikis. Gil, Y.; Knight, A.; Zhang, K.; Zhang, L.; and Sethi, R. In Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), Santa Monica, CA, 2013.
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Using Semantic Workflows for Genome-Scale Analysis. Gil, Y.; Ratnakar, V.; Deelman, E.; and Mason, C. 2012. International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA.
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Final Report of the 2011 Workshop on Aquatic Ecosystem Sustainability (WAES). Gil, Y.; and Harmon, T. 2011. Technical Report ISI-TR-674, Information Sciences Institute, Marina del Rey, CA..
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Common Motifs in Scientific Workflows: An Empirical Analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. In Proceedings of the IEEE Conference on e-Science, Chicago, Illinois, 2012.
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Shortipedia: Aggregating and Curating Semantic Web Data. Vrandecic, D.; Ratnakar, V.; Kroetzsch, M.; and Gil, Y. Journal of Web Semantics, 9(3). 2011.
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A Framework for Efficient Text Analytics through Automatic Configuration and Customization of Scientific Workflows. Hauder, M.; Gil, Y.; and Liu, Y. In Proceedings of the Seventh IEEE International Conference on e-Science, Stockholm, Sweden, 2011.
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A Social Collaboration Argumentation System for Generating Multi-Faceted Answers in Question and Answer Communities. Sethi, R. J.; and Gil, Y. In Proceedings of the AAAI Workshop on Computational Models of Natural Argument, San Francisco, CA, 2011.
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Interactive Knowledge Capture in the New Millenium: How the Semantic Web Changed Everything. Gil, Y. Knowledge Engineering Review, 26(1). 2011.
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Social Task Networks: Personal and Collaborative Task Formulation and Management in Social Networking Sites. Gil, Y.; Groth, P.; and Ratnakar, V. In Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents, Arlington, VA, 2010.
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Principles for Interactive Acquisition and Validation of Workflows. Kim, J.; Gil, Y.; and Spraragen, M. Journal of Experimental and Theoretical Artificial Intelligence, 22(2):103-134. 2010.
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Workflow Matching using Semantic Metadata. Gil, Y.; Kim, J.; Puga, G. F.; Ratnakar, V.; and González-Calero, P. A. In Proceedings of the Fifth International Conference on Knowledge Capture (K-CAP), page 121-128, Redondo Beach, CA, 2009.
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From Data to Knowledge to Discoveries: Artificial Intelligence and Scientific Workflows. Gil, Y. Scientific Programming, 17(3):231-246. 2009.
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Provenance Trails in the Wings/Pegasus Workflow System. Kim, J.; Deelman, E.; Gil, Y.; Mehta, G.; and Ratnakar, V. Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge, 20(5). 2008.
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Privacy Enforcement in Data Analysis Workflows. Gil, Y.; Cheung, W. K.; Ratnakar, V.; and Chan, K. In Proceedings of the AAAI Workshop on Privacy Enforcement and Accountability with Semantics (PEAS), held in conjunction with the Sixth International Semantic Web Conference (ISWC) and the Second Asian Semantic Web Conference (ASWC), Busan, Korea, 2007.
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On the Black Art of Designing Computational Workflows. Gil, Y.; Gonzalez-Calero, P. A.; and Deelman, E. In Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the IEEE International Symposium on High Performance Distributed Computing (HPDC), Monterrey, CA, 2007.
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Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows. Gil, Y.; Kim, J.; Ratnakar, V.; and Deelman, E. In Proceedings of the 2006 Workshop on OWL: Experiences and Directions (OWL-ED), Athens, GA, 2006.
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Towards Content Trust of Web Resources. Gil, Y.; and Artz, D. In Proceedings of the Fifteenth International World Wide Web Conference (WWW), page 565-574, Edinburgh, Scotland, UK, 2006.
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Simplifying Construction of Complex Workflows for Non-Expert Users of the Southern California Earthquake Center Community Modelling Environment. Maechling, P.; Chalupsky, H.; Dougherty, M.; Deelman, E.; Gil, Y.; Gullapalli, S.; Gupta, V.; Kesselman, C.; Kim, J.; Mehta, G.; Mendenhall, B.; Russ, T.; Singh, G.; Spraragen, M.; Staples, G.; and Vahi, K. ACM SIGMOD Record, Special Issue on Scientific Workflows, 34(3). 2005.
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Towards Managing Knowledge Collection from Volunteer Contributors. Chklovski, T.; and Gil, Y. In Proceedings of the AAAI Spring Symposium on Knowledge Collection from Volunteer Contributors (KCVC), Stanford, CA, 2005.
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Artemis: Integrating Scientific Data on the Grid. Tuchinda, R.; Thakkar, S.; Gil, Y.; and Deelman, E. In Proceedings of the Sixteenth Conference on Innovative Applications of Artificial Intelligence (IAAI), page 892-899, San Jose, CA, 2004.
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Pegasus and the Pulsar Search: From Metadata to Execution on the Grid. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Koranda, S.; Lazzarini, A.; Mehta, G.; Papa, M. A.; and Vahi, K. In Applications Grid Workshop at the Fifth International Conference on Parallel Processing and Applied Mathematics (PPAM), page 821-830, Czestochowa, Poland, 2003.
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Proactive Acquisition from Tutoring and Learning Principles. Kim, J.; and Gil, Y. In Proceedings of the Eleventh International Conference on Artificial Intelligence in Education (AI-ED), Sydney, Australia, 2003.
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Interactive Knowledge Acquisition Tools: A Tutoring Perspective. Gil, Y.; and Kim, J. In Proceedings of the 24th Annual Meeting of the Cognitive Science Society (CogSci), Fairfax, VA, August 8-10, 2002.
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User Studies of Knowledge Acquisition Tools: Methodology and Lessons Learned. Tallis, M.; Kim, J.; and Gil, Y. Journal of Experimental and Theoretical Artificial Intelligence, 13:359-378. 2001.
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An integrated environment for knowledge acquisition. Blythe, J.; Kim, J.; Ramachandran, S.; and Gil, Y. In Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), page 13-20, 2001.
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Deriving Expectations to Guide Knowledge Base Creation. Kim, J.; and Gil, Y. In Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI), page 235-241, Orlando, FL, 1999.
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Planning Experiments: Resolving Interactions between Two Planning Spaces. Gil, Y. In Proceedings of the Third International Conference on Artificial Intelligence Planning Systems (AIPS), page 102-109, Edinburgh, Scotland, 1996.
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Knowledge Refinement in a Reflective Architecture. Gil, Y. In Proceedings of the Twelfth National Conference on Artificial Intelligence (AAAI), page 520-526, 1994.
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Learning by Experimentation: The Operator Refinement Method. Gil, Y.; and Carbonell, J. In Machine Learning: An Artificial Intelligence Approach, Volume III, Michalski, R. S. and Kodratoff, Y. (Eds.). Morgan Kaufmann, San Mateo, CA, 1990.
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Large-Scale Multimedia Content Analysis Using Scientific Workflows. Sethi, R. J.; Gil, Y.; Jo, H.; and Philpot, A. In Twenty-First ACM International Conference on Multimedia, Barcelona, Spain, 2013.
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Using Semantic Workflows to Disseminate Best Practices and Accelerate Discoveries in Multi-Omic Data Analysis. Gil, Y.; McWeeney, S.; and Mason, C. E. In AAAI Workshop on Expanding the Boundaries of Health Informatics using AI (HIAI), held in conjunction with the Conference of the Association for the Advancement of Artificial Intelligence (AAAI), Bellevue, WA, 2013.
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The AAAI Fall Symposium on "Discovery Informatics: The Role of AI Research in Innovating Scientific Processes. Gil, Y.; and Hirsh, H. AI Magazine, 34(1). 2013.
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Designing a Roadmap for Geoscience Workflows. Duffy, C.; Gil, Y.; Deelman, E.; Marru, S.; Pierce, M.; Demir, I.; and Wiener, G. Eos Transactions of the American Geophysical Union, 93(24). 2012.
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Similarity Assessment and Efficient Retrieval of Semantic Workflows. Bergmann, R.; and Gil, Y. To appear in the Information Systems Journal, . 2012.
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Capturing Common Knowledge about Tasks: Intelligent Assistance for To Do Lists. Gil, Y.; Ratnakar, V.; Chklovski, T.; Groth, P.; and Vrandecic, D. ACM Transactions on Interactive Intelligent Systems, 2(3). 2012.
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A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data. Garijo, D.; and Gil, Y. In Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, 2011.
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Mind Your Metadata: Exploiting Semantics for Configuration, Adaptation, and Provenance in Scientific Workflows. Gil, Y.; Szekely, P.; Villamizar, S.; Harmon, T.; Ratnakar, V.; Gupta, S.; Muslea, M.; Silva, F.; and Knoblock, C. In Proceedings of the Tenth International Semantic Web Conference (ISWC), Bonn, Germany, 2011.
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LinkedDataLens: Linked Data as a Network of Networks. Groth, P.; and Gil, Y. In Proceedings of the ACM International Conference on Knowledge Capture (K-CAP), Banff, Alberta, Canada, 2011.
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The Open Provenance Model Core Specification (v1.1). Moreau, L.; Clifford, B.; Freire, J.; Futrelle, J.; Gil, Y.; Groth, P.; Kwasnikowska, N.; Miles, S.; Missier, P.; Myers, J.; Plale, B.; Simmhan, Y.; Stephan, E.; and denBussche, J. V. Future Generation Computer Systems, 27(6). 2011.
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Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows. Gil, Y.; Ratnakar, V.; and Fritz, C. In Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents, Arlington, VA, 2010.
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Reasoning about the Appropriate Use of Private Data through Computational Workflows. Gil, Y.; and Fritz, C. In Proceedings of the AAAI Spring Symposium on Privacy Management, Stanford, CA, 2010.
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Proceedings of the 5th International Conference on Knowledge Capture (K-CAP). Gil, Y.; and Noy, N. F., editors. Redondo Beach, CA, 2009. Association for Computing Machinery.
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Scaffolding Instructions to Learn Procedures from Users. Groth, P.; and Gil, Y. In Proceedings of the AAAI Spring Symposium on Agents that Learn from Human Teachers, Stanford, CA, 2009.
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Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging. Kumar, V. S.; Hall, M. W.; Kim, J.; Gil, Y.; Kuŗc, T. M.; Deelman, E.; Ratnakar, V.; and Saltz, J. H. In Proceedings of the Twentysecond IEEE International Symposium on Parallel and Distributed Processing (IPDPS), Miami, FL, 2008.
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Incorporating tutoring principles into interactive knowledge acquisition. Kim, J.; and Gil, Y. International Journal of Human-Computer Studies, 65(10):852-872. 2007.
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Intelligent Optimization of Parallel and Distributed Applications. Bansal, B.; ̧Catalyürek, Ü. V.; Chame, J.; Chen, C.; Deelman, E.; Gil, Y.; Hall, M. W.; Kumar, V. S.; Kuŗc, T. M.; Lerman, K.; Nakano, A.; Nelson, Y. L.; Saltz, J. H.; Sharma, A.; and Vashishta, P. In Proceedings of the Twentyfirst International Parallel and Distributed Processing Symposium (IPDPS), Long Beach, CA, 2007.
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Semantic Metadata Generation for Large Scientific Workflows. Kim, J.; Gil, Y.; and Ratnakar, V. In Proceedings of the Fifth International Semantic Web Conference (ISWC), page 357-370, Athens, GA, 2006.
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Metadata Catalogs with Semantic Representations. Gil, Y.; Ratnakar, V.; and Deelman, E. In Proceedings of the International Provenance and Annotation Workshop (IPAW), page 90-100, Chicago, IL, 2006.
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Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems. Deelman, E.; Singh, G.; Su, M.; Blythe, J.; Gil, Y.; Kesselman, C.; Kim, J.; Mehta, G.; Vahi, K.; Berriman, G. B.; Good, J.; Laity, A.; Jacob, J. C.; and Katz, D. S. Scientific Programming, 13(3). 2005.
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User interfaces with semi-formal representations: a study of designing argumentation structures. Chklovski, T.; Ratnakar, V.; and Gil, Y. In Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), page 130-136, San Diego, CA, 2005.
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Incremental formalization of document annotations through ontology-based paraphrasing. Blythe, J.; and Gil, Y. In Proceedings of the 13th International World Wide Web Conference (WWW), page 455-461, New York, NY, 2004.
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TRELLIS: Supporting Decision Making via Argumentation in the Semantic Web. Chklovski, T.; Gil, Y.; Ratnakar, V.; and Lee, J. In Proceedings of Second International Semantic Web Conference (ISWC), Sanibel Island, FL, 2003.
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The Role of Planning in Grid Computing. Blythe, J.; Deelman, E.; Gil, Y.; Kesselman, C.; Agarwal, A.; Mehta, G.; and Vahi, K. In Proceedings of the Thirteenth International Conference on Automated Planning and Scheduling (ICAPS), page 153-163, Trento, Italy, 2003.
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Agent Technology to Support Human Organizations. Chalupsky, H.; Gil, Y.; Knoblock, C.; Lerman, K.; Oh, J.; Pynadath, D.; Russ, T.; and Tambe, M. AI Magazine, 23(2). 2002.
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Knowledge Entry as Graphical Assembly of Components. Clark, P.; Thompson, J.; Barker, K.; Porter, B.; Chaudhi, V.; Rodriguez, A.; Thomere, J.; Mishra, S.; Gil, Y.; Hayes, P.; and Reichherzer, T. In Proceedings of the First International Conference on Knowledge Capture (K-CAP), Victoria, British Columbia, 2001.
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Acquiring Problem-Solving Knowledge from End Users: Putting Interdependency Models to the Test. Kim, J.; and Gil, Y. In Proceedings of the Seventeenth National Conference on Artificial Intelligence (AAAI), page 223-229, Austin, TX, 2000.
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Designing Scripts to Guide Users in Modifying Knowledge-based Systems. Tallis, M.; and Gil, Y. In Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI), page 242-249, Orlando, FL, 1999.
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Subsumption-Based Matching: Bringing Semantics to Goals. Gil, Y.; and González, P. A. In Proceedings of the International Workshop on Description Logics (DL), page 116-118, Cambridge, MA, 1996.
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Learning by Experimentation: Incremental Refinement of Incomplete Planning Domains. Gil, Y. In Proceedings of the Eleventh International Machine Learning Conference (ICML), page 87-95, Rutgers, NJ, 1994.
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Explanation-Based Learning: A Problem-Solving Perspective. Minton, S.; Carbonell, J. G.; Knoblock, C.; Kuokka, D. R.; Etzioni, O.; and Gil, Y. Artificial Intelligence, 40(1/3):63-118. 1989.
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Structured Analysis of the ISI Atomic Pair Actions Dataset Using Workflows. Sethi, R. J.; Jo, H.; and Gil, Y. Pattern Recognition Letters, . 2013.
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Intelligent Assistance to Disseminate Best Practices and Accelerate Discoveries in Cancer Omics. Gil, Y.; Mason, C. E.; Zheng, C.; and McWeeney, S. 2013. 2013 NCI EDRN Cancer Biomarkers Bioinformatics Workshop, Pasadena, CA.
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A Primer for the PROV Provenance Model. Gil, Y.; Miles, S.; Belhajjame, K.; Deus, H.; Garijo, D.; Klyne, G.; Missier, P.; Soiland-Reyes, S.; and Zednik, S. 2013. World Wide Web (W3C).
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EarthCube Report on a Workflows Roadmap for the Geosciences. Deelman, E.; Duffy, C.; Gil, Y.; Marru, S.; Pierce, M.; and Wiener, G. 2012. National Science Foundation, Arlington, VA..
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Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data. Garijo, D.; and Gil, Y. In Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC), Boston, MA, 2012.
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Automatic Metadata Annotation through Reconstructing Provenance. Groth, P.; Gil, Y.; and Magliacane, S. In Proceedings of the Third International Workshop on the role of Semantic Web in Provenance Management (SWPM), Heraklion, Greece, 2012.
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Making Data Analysis Expertise Broadly Accessible through Workflows. Hauder, M.; Gil, Y.; Sethi, R.; Liu, Y.; and Jo, H. In Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, 2011.
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Introduction to the Special Issue on Using Provenance in the Semantic Web. Gil, Y.; and Groth, P. Journal of Web Semantics, 9(2). 2011.
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TellMe: Learning Procedures from Tutorial Instruction. Gil, Y.; Ratnakar, V.; and Fritz, C. In Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA, 2011.
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Final Report of the W3C Provenance Incubator Group. Gil, Y.; Cheney, J.; Groth, P.; Hartig, O.; Miles, S.; Moreau, L.; and daSilva, P. P. 2010. World Wide Web Consortium (W3C).
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Towards the Integration of Programming by Demonstration and Programming by Instruction using Golog. Fritz, C.; and Gil, Y. In Proceedings of the AAAI Workshop on Plan, Activity, and Intent Recognition (PAIR), Atlanta, GA, 2010.
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High Performance Computing and Grid Computing for Integrative Biomedical Research. Kuŗc, T. M.; Hastings, S.; Kumar, V. S.; Langella, S.; Sharma, A.; Pan, T.; Oster, S.; Ervin, D.; Permar, J.; Narayanan, S.; Gil, Y.; Deelman, E.; Hall, M. W.; and Saltz, J. H. Journal of High Performance Computing Applications, 23(3):252-264. 2009.
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Leveraging Social Networking Sites to Acquire Rich Task Structure. Gil, Y.; Groth, P.; and Ratnakar, V. In Proceedings of the IJCAI Workshop on User-Contributed Knowledge and Artificial Intelligence: An Evolving Synergy (WikiAI), held in conjunction with the Twenty-First International Joint Conference on Artificial Intelligence (IJCAI), Pasadena, CA, 2009.
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A Scientific Workflow Construction Command Line. Groth, P. T.; and Gil, Y. In Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), page 445-450, Sanibel Island, FL, 2009.
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Self-Configuring Applications for Heterogeneous Systems: Program Composition and Optimization Using Cognitive Techniques. Hall, M.; Gil, Y.; and Lucas, R. In Proceedings of the IEEE, Special Issue on Cutting-Edge Computing: Using New Commodity Architectures, volume 96, 2008.
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A survey of trust in computer science and the Semantic Web. Artz, D.; and Gil, Y. Journal of Web Semantics, 5(2):58-71. 2007.
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Enhancing Interaction with To-Do Lists Using Artificial Assistants. Gil, Y.; and Chklovski, T. In Proceedings of the AAAI Spring Symposium on Interaction Challenges for Artificial Assistants, Stanford, CA, 2007.
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Workflow Composition. Gil, Y. In Workflows for e-Science. Springer Verlag, 2006.
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Organizing Argumentation Statements to Support Intelligence Analysis. Chklovski, T.; Kim, J.; and Gil, Y. In Proceedings of the Workshop on Intelligent User Interfaces for Intelligence Analysis at the ACM International Conference on Intelligent User Interfaces, Sydney, Australia, 2006.
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An Analysis of Knowledge Collected from Volunteer Contributors. Chklovski, T.; and Gil, Y. In Proceedings of the Twentieth National Conference on Artificial Intelligence (AAAI), page 564-571, Pittsburgh, PA, 2005.
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A short study on the success of the Gene Ontology. Bada, M.; Stevens, R.; Goble, C. A.; Gil, Y.; Ashburner, M.; Blake, J. A.; Cherry, J. M.; Harris, M. A.; and Lewis, S. Journal of Web Semantics, 1(2):235-240. 2004.
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Guest Editor's Introduction to the Special Issue on e-Science. DeRoure, D.; Gil, Y.; and (Eds), J. H. IEEE Intelligent Systems, . 2004.
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Workflow Management in GriPhyN. Deelman, E.; Blythe, J.; Gil, Y.; and Kesselman, C. In Grid Resource Management. Kluwer, 2003.
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Knowledge Mobility: Semantics for the Web as a White Knight for Knowledge-Based Systems. Gil, Y. In Spinning the Semantic Web: Bringing the World Wide Web to Its Full Potential, page 253-278. MIT Press, 2003.
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Trusting Information Sources One Citizen at a Time. Gil, Y.; and Ratnakar, V. In Proceedings of the First Semantic Web Conference (ISWC), page 162-176, Sardinia, Italy, 2002.
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Knowledge Analysis on Process Models. Kim, J.; and Gil, Y. In Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence (IJCAI), page 935-942, Seattle, WA, 2001.
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PLANET: A Shareable and Reusable Ontology for Representing Plans. Gil, Y.; and Blythe, J. In AAAI Workshop on Representational Issues for Real-World Planning Systems, Austin, TX, 2000.
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On the Role of Humans in Enterprise Control Systems: the Experience of INSPECT. Valente, A.; Blythe, J.; Gil, Y.; and Swartout, W. In First DARPA-JFACC Symposium on Advances in Enterprise Control. San Diego, CA, 1999.
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EXPECT: A User-Centered Environment for the Development and Adaptation of Knowledge-Based Planning Aids. Gil, Y.; and Swartout, W. In Advanced Planning Technology: Technological Achievements of the ARPA/Rome Laboratory Planning Initiative, Austin Tate (Ed). AAAI Press, Menlo Park, CA, 1996.
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Efficient Domain-Independent Experimentation. Gil, Y. In Proceedings of the Tenth International Machine Learning Conference (ICML), page 128-134, Amherst, MA, 1993.
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Expressive Reusable Workflow Templates. Gil, Y.; Groth, P.; Ratnakar, V.; and Fritz, C. In Proceedings of the Fifth IEEE International Conference on e-Science (e-Science), Oxford, UK, 2009.
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Analyzing the Gap between Workflows and their Natural Language Descriptions. Groth, P. T.; and Gil, Y. In Proceedings of the IEEE International Workshop on Scientific Workflows (SWF), page 299-305, Los Angeles, CA, 2009.
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Automating To-Do Lists for Users: Interpretation of To-Dos for Selecting and Tasking Agents. Gil, Y.; and Ratnakar, V. In Proceedings of the Twenty-Third Conference of the American Association for Artificial Intelligence (AAAI), page 765-771, Chicago, IL, 2008.
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Towards Intelligent Assistance for To-Do Lists. Gil, Y.; and Ratnakar, V. In Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), page 329-332, Gran Canaria, Canary Islands, Spain, 2008.
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Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows. Gil, Y.; Ratnakar, V.; Deelman, E.; Mehta, G.; and Kim, J. In Proceedings of the Twenty-Second National Conference on Artificial Intelligence (AAAI), page 1767-1774, Vancouver, British Columbia, Canada, 2007.
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Final Report of the NSF Workshop on Challenges of Scientific Workflows. Deelman, E.; and (Co-Chairs), Y. G. 2006. National Science Foundation, also available from http://www.nsf.gov/od/oci/reports.jsp.
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On Agents and Grids: Creating the Fabric of a New Generation of Distributed Intelligent Systems. Gil, Y. Journal of Web Semantics, 4(2). 2006.
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Virtual Metadata Catalogs: Augmenting Metadata Catalogs with Semantic Representations. Gil, Y.; Ratnakar, V.; and Deelman, E. In Proceedings of the Fourth International Semantic Web Conference (ISWC), Galway, Ireland, 2005.
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Description Logics and Planning. Gil, Y. AI Magazine, 26(2):73-84. 2005.
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Pegasus: Mapping Scientific Workflows onto the Grid. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Patil, S.; Su, M.; Vahi, K.; and Livny, M. In Proceedings of the Second European Across Grids Conference (AxGrids), page 11-20, Nicosia, Cyprus, 2004.
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Artificial Intelligence and Grids: Workflow Planning and Beyond. Gil, Y.; Deelman, E.; Blythe, J.; Kesselman, C.; and Tangmunarunkit, H. IEEE Intelligent Systems, 19(1):26-33. 2004.
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Mapping Abstract Workflows onto Grid Environments. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Vahi, K.; Blackburn, K.; Lazzarini, A.; Arbree, A.; Cavanaugh, R.; and Koranda, S. Journal of Grid Computing, 1(1). 2003.
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IKRAFT: Interactive Knowledge Representation and Acquisition from Text. Gil, Y.; and Ratnakar, V. In Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW), page 27-36, Siguenza, Spain, 2002.
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Deriving Acquisition Principles from Tutoring Principles. Kim, J.; and Gil, Y. In Proceedings of the International Conference on Intelligent Tutoring Systems (ITS), page 661-670, Biarritz, France and San Sebastian, Spain, 2002.
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Electric Elves: Applying Agent Technology to Support Human Organizations. Chalupsky, H.; Gil, Y.; Knoblock, C. A.; Lerman, K.; Oh, J.; Pynadath, D. V.; Russ, T. A.; and Tambe, M. In Proceedings of the Thirteenth Innovative Applications of Artificial Intelligence Conference (IAAI), page 51-58, Seattle, WA, 2001.
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How Can a Structured Representation of Capabilities Help in Planning?. Gil, Y.; and Blythe, J. In AAAI 2000 Workshop on Representational Issues for Real-world Planning Systems, Austin, TX, 2000.
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A Script-Based Approach to Modifying Knowledge Bases. Gil, Y.; and Tallis, M. In Proceedings of the Fourteenth National Conference on Artificial Intelligence (AAAI), page 377-383, Providence, RI, 1997.
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Planning and Learning in Prodigy: Overview of an Integrated Architecture. Carbonell, J.; Etzioni, O.; Gil, Y.; Joseph, R.; Knoblock, C.; Minton, S.; and Veloso, M. In Ram, A.; and Leake, D. B., editor, Goal-Driven Learning, 11, page 297--306. MIT Press, Cambridge, MA, 1995.
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PRODIGY: An Integrated Architecture for Planning and Learning. Carbonell, J. G.; Etzioni, O.; Gil, Y.; Joseph, R.; Knoblock, C. A.; Minton, S.; and Veloso, M. M. SIGART Bulletin, 2(4):51-55. 1991.
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