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J. P. Walters, V. Chaudhary, and B. Schmidt, "Database Searching with Profile-Hidden Markov Models on Reconfigurable and Many-Core Architectures", Bioinformatics: high performance parallel computer architectures, vol. 2: CRC Pr I Llc, pp. 203, 2010.
J. P. Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B. Schmidt, D. Nathan, and J. Landman, "MPI-HMMER-Boost: Distributed FPGA Acceleration", The Journal of VLSI Signal Processing, vol. 48, no. 3: Springer Netherlands, pp. 223–238, 2007.