Publications

Export 120 results:
2017
J. L. Ambite, L. Fierro, F. Geigl, J. Gordon, G. A. P. C. Burns, K. Lerman, J. Kamdar, C. Stewart, A. Bhattrai, X. Lei, S. Abe, and J. D. V. Horn, "The BD2K Training Coordinating Center’s Data Science Education Platform", American Medical Informatics Association Annual Symposium, Washington, DC, November, 2017.
J. L. Ambite, L. Fierro, F. Geigl, J. Gordon, G. A. P. C. Burns, K. Lerman, and J. D. Van Horn, "BD2K ERuDIte: the Educational Resource Discovery Index for Data Science", Proceedings of the 26th International Conference on World Wide Web Companion: International World Wide Web Conferences Steering Committee, pp. 1203–1211, 2017.
Y. Lin, F. Pan, Y. - Y. Chiang, D. Stripelis, J. L. Ambite, S. P. Eckel, and R. Habre, "Mining Public Datasets for Modeling Intra-City {$PM_{2.5}$} Concentrations at a Fine Spatial Resolution", Proceedings of the 25rd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, Redondo Beach, CA, 2017.
E. Sheng, S. Miller, J. L. Ambite, and P. Natarajan, "A Neural Named Entity Recognition Approach to Biological Entity Identification", BioCreative VI Challenge and Workshop, Bethesda, MD, 2017.
D. Stripelis, J. L. Ambite, Y. - Y. Chiang, S. P. Eckel, and R. and Habre, "A Scalable Data Integration and Analysis Architecture for Sensor Data of Pediatric Asthma", IEEE International Conference on Data Engineering (ICDE), San Diego, 2017.
J. L. Ambite, K. Lerman, L. Fierro, F. Geigl, J. Gordon, and G. A. Burns, "BD2K ERuDIte: The Educational Resource Discovery Index for Data Science", The 4th WWW Workshop on Big Scholarly Data: Towards the Web of Scholars, Perth, Australia, 2017.
2016
G. A. Burns, U. Hermjakob, and J. L. Ambite, "Abstract Meaning Representations as Linked Data", Proceedings of the 15th International Semantic Web Conference (ISWC 2016), Kobe, Japan, 2016.
M. Taheriyan, C. Knoblock, P. Szekely, and J. L. Ambite, "Leveraging Linked Data to Discover Semantic Relations within Data Sources", Proceedings of the 15th International Semantic Web Conference (ISWC 2016), Kobe, Japan, 2016.
L. Wang, K. I. Alpert, V. Calhoun, D. Keator, M. King, A. Kogan, D. Landis, S. G. Potkin, J. A. Turner, and J. L. Ambite, "SchizConnect: Flexible, Dynamic Platform for Mediating Multiple Schizophrenia Neuroimaging Databases", Organization for Human Brain Mapping (OHBM) Annual Meeting, Geneva, Switzerland, 2016.
M. Taheriyan, C. Knoblock, P. Szekely, and J. L. Ambite, "Learning the Semantics of Structured Data Sources", Web Semantics: Science, Services and Agents on the World Wide Web: Elsevier, 2016.
2015
N. Ashish, and J. L. Ambite, Data Integration in the Life Sciences - 11th International Conference, DILS 2015, : Springer, 2015.
A. Kogan, K. Alpert, J. L. Ambite, D. S. Marcus, and L. Wang, "Northwestern University schizophrenia data sharing for SchizConnect: A longitudinal dataset for large-scale integration", Neuroimage, 2015.
G. Konstantinidis, and J. L. Ambite, "Optimizing the Chase: Scalable Data Integration under Constraints", Proceedings of 41st International Conference on Very Large Data Bases, Kohala Coast, Hawaii, 2015.
J. M. Kocarnik, L. S. Park, J. Han, L. Dumitrescu, I. Cheng, L. R. Wilkens, F. R. Schumacher, L. Kolonel, C. S. Carlson, D. C. Crawford, R. J. Goodloe, H. H. Dilks, P. Baker, D. Richardson, T. C. Matise, J. L. Ambite, F. Song, A. A. Qureshi, M. Zhang, D. Duggan, et al., "Pleiotropic and sex-specific effects of cancer GWAS SNPs on melanoma risk in the Population Architecture using Genomics and Epidemiology (PAGE) study", PLOS One, 2015.
L. Wang, K. I. Alpert, V. D. Calhoun, D. J. Cobia, D. B. Keator, M. D. King, A. Kogan, D. Landis, M. Tallis, M. D. Turner, S. G. Potkin, J. A. Turner, and J. L. Ambite, "SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration", Neuroimage, 2015.
J. L. Ambite, M. Tallis, K. I. Alpert, D. B. Keator, M. D. King, D. Landis, G. Konstantinidis, V. D. Calhoun, S. G. Potkin, J. A. Turner, and L. Wang, "SchizConnect: Virtual Data Integration in Neuroimaging", Proceedings of the 11th International Conference on Data Integration in the Life Sciences (DILS 2015), Los Angeles, CA, pp. 37–51, 2015.
J. A. Turner, D. Pasquerello, M. D. Turner, D. B. Keator, K. I. Alpert, M. D. King, D. Landis, V. D. Calhoun, S. G. Potkin, M. Tallis, J. L. Ambite, and L. Wang, "Terminology Development Towards Harmonizing Multiple Clinical Neuroimaging Research Repositories", Proceedings of the 11th International Conference on Data Integration in the Life Sciences (DILS 2015), Los Angeles, CA, pp. 104–117, 2015.
N. Ashish, P. Dewan, J. L. Ambite, and A. W. Toga, "GEM: The GAAIN Entity Mapper", Proceedings of the 11th International Conference on Data Integration in the Life Sciences (DILS 2015), Los Angeles, CA, pp. 13–27, 2015.
M. Taheriyan, C. Knoblock, P. Szekely, J. L. Ambite, and Y. Chen, "Leveraging Linked Data to Infer Semantic Relations within Structured Sources", Proceedings of the 6th International Workshop on Consuming Linked Data (COLD 2015), 2015.
2014
R. Parundekar, C. A. Knoblock, and J. L. Ambite, "Aligning Ontologies of Linked Data", Linked Data Management: Principles and Techniques: CRC Press, 2014.
G. Konstantinidis, and J. L. Ambite, "Optimizing the Chase: Scalable Data Integration under Constraints", PVLDB, vol. 7, no. 14, pp. 1869-1880, 2014.
M. Taheriyan, C. A. Knoblock, P. Szekely, and J. L. Ambite, "A Scalable Approach to Learn Semantic Models of Structured Sources", Proceedings of the 8th IEEE International Conference on Semantic Computing (ICSC 2014), 2014.
J. M. Kocarnik, L. S. Park, J. Han, L. Dumitrescu, I. Cheng, L. R. Wilkens, F. R. Schumacher, L. Kolonel, C. S. Carlson, D. C. Crawford, R. J. Goodloe, H. Dilks, P. Baker, D. Richardson, J. L. Ambite, F. Song, A. A. Quresh, M. Zhang, D. Duggan, C. Hutter, et al., "Replication of Associations Between GWAS SNPs and Melanoma Risk in the Population Architecture Using Genomics and Epidemiology (PAGE) Study", Journal of Investigative Dermatology, vol. 134, no. 7, pp. 2049–52, 2014.
2013
S. L. Park, I. Cheng, S. A. Pendergrass, A. M. Kucharska-Newton, U. Lim, J. L. Ambite, C. P. Caberto, K. R. Monroe, F. Schumacher, L. A. Hindorff, M. T. Oetjens, S. Wilson, R. J. Goodloe, S. - A. Love, B. E. Henderson, L. N. Kolonel, C. A. Haiman, D. C. Crawford, K. E. North, G. Heiss, et al., "Association of the FTO Obesity Risk Variant rs8050136 With Percentage of Energy Intake From Fat in Multiple Racial/Ethnic Populations: The PAGE Study", American Journal of Epidemiology, vol. 178, no. 5, pp. 780-790, 2013.
R. Parundekar, C. A. Knoblock, and J. L. Ambite, "Discovering Alignments in Ontologies of Linked Data", Proceedings of the 23rd International Joint Conference on Artificial Intelligence, Beijing, China, 2013.