Rafael Ferreira da Silva

Publications

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2019

2018

Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis

Estrada, Trilce, Benson, Jeremy, Carrillo-Cabada, Hector, Razavi, Asghar, Cuendet, Michel, Weinstein, Harel, Ewa Deelman, Michela Taufer
In 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
2018, 315-324 pages

Combating Workflow Failures with Integrity-based Checkpoints and Blockchain

Bhide, Omkar, Hill, Raquel, Karan Vahi, Mats Rynge, Velch, Von
In 6th International Workshop on Distributed Storage and Blockchain Technologies for Big Data
2018

Workflows using Pegasus: Enabling Dark Energy Survey Pipelines

Karan Vahi, Wang, Michael H., Chang, Chihway, Dodelson, Scott, Mats Rynge, Ewa Deelman
In 28th annual international Astronomical Data Analysis Software & Systems (ADASS)
2018

Enabling Data Analytics Workflows using Node-Local Storage

Do, Tu Mai Anh, Jiang, Ming, Gallagher, Brian, Chu, Albert, Harrison, Cyrus, Karan Vahi, Ewa Deelman
In The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC18), Poster
2018

2017

OSG-KINC: High-throughput gene co-expression network construction using the open science grid

W. L. Poehlman, Rynge, M., D. Balamurugan, N. Mills, F. A. Feltus
In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2017, 1827-1831 pages

2016

Anomaly Detection for Scientific Workflow Applications on Networked Clouds

Prathamesh Gaikwad, Anirban Mandal, Paul Ruth, Gideon Juve, Dariusz Krol, Ewa Deelman
In IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016)
2016

2015

2014

2013

Imbalance Optimization in Scientific Workflows

Weiwei Chen, Ewa Deelman, Rizos Sakellariou
In International Conference on Supercomputing (ICS 2013)
2013

2012

Fault Tolerant Clustering in Scientific Workflows

Weiwei Chen, Ewa Deelman
In IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in conjunction with IEEE 8th World Congress on Services (SERVICES 2012)
2012
http://pegasus.isi.edu/publications/2012/WChen-FTC-Services12.pdf

Integration of Workflow Partitioning and Resource Provisioning

Weiwei Chen, Ewa Deelman
In The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium
2012
http://pegasus.isi.edu/publications/2012/WChen-Integration-CCGrid12.pdf

2011

Automating Application Deployment in Infrastructure Clouds

Gideon Juve, Ewa Deelman
In 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011)
2011

Online Fault and Anomaly Detection for Large-Scale Scientific Workflows

Taghrid Samak, Dan Gunter, Ewa Deelman, Gideon Juve, Gaurang Mehta, Fabio Silva, Karan Vahi
In 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011)
2011

Enabling Data and Compute Intensive Workflows in Bioinformatics

Gaurang Mehta, Ewa Deelman, James A Knowles, Ting Chen, Ying Wang, Jens-S. Vöckler, Steven Buyske, Tara Matise
In 2nd International Workshop onHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in conjunction with Euro-Par Conference 2011
2011

Wrangler: Virtual Cluster Provisioning for the Cloud

Gideon Juve, Ewa Deelman
In Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11)
2011

2010

The Application of Cloud Computing to Astronomy: A Study of Cost and Performance

G. Bruce Berriman, Gideon Juve, Ewa Deelman, Moira Regelson, Peter Plavchan
In In Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010)
2010

Scientific Workflows in the Cloud

Gideon Juve, Ewa Deelman
In Grids, Clouds and Virtualization
2010, 71–91 pages

2009

2008

Resource Provisioning Options for Large-Scale Scientific Workflows

Gideon Juve, Ewa Deelman
In Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)
2008
http://pegasus.isi.edu/publications/2008/JuveG-ResourceProvisioningOptions.pdf

On the Use of Cloud Computing for Scientific Workflows

Christina Hoffa, Gaurang Mehta, Timothy Freeman, Ewa Deelman, Kate Keahey, Bruce Berriman, John Good
In 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)
2008
http://pegasus.isi.edu/publications/2008/Hoffa-CloudComputing.pdf

Data Management Challenges of Data-Intensive Scientific Workflows

Ewa Deelman, Ann Chervenak
In 3rd International Workshop on Workflow Systems in e-Science (WSES 08), in conjunction with CCGrid 2008
2008
http://pegasus.isi.edu/publications/2008/wses2008.pdf

2007

2006

2005

2004

2003

2002

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