Publications – Karan Vahi

2022 (4)

Novel Proposals for FAIR, Automated, Recommendable, and Robust Workflows. Abhinit, I.; Adams, E. K.; Alam, K.; Chase, B.; Deelman, E.; Gorenstein, L.; Hudson, S.; Islam, T.; Larson, J.; Lentner, G.; Mandal, A.; Navarro, J.; Nicolae, B.; Pouchard, L.; Ross, R.; Roy, B.; Rynge, M.; Serebrenik, A.; Vahi, K.; Wild, S.; Xin, Y.; da Silva, R. F.; and Filgueira, R. In 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), pages 84-92, 2022. Funding Acknowledgments: NSF 1839900 and DOE DE-AC02-06CH11357, DE-AC05-00OR22725
doi link bibtex

@InProceedings{	  novel-fair-works-2022,
  Author	= {Abhinit, Ishan and Adams, Emily K. and Alam, Khairul and
		  Chase, Brian and Deelman, Ewa and Gorenstein, Lev and
		  Hudson, Stephen and Islam, Tanzima and Larson, Jeffrey and
		  Lentner, Geoffrey and Mandal, Anirban and Navarro,
		  John-Luke and Nicolae, Bogdan and Pouchard, Line and Ross,
		  Rob and Roy, Banani and Rynge, Mats and Serebrenik,
		  Alexander and Vahi, Karan and Wild, Stefan and Xin, Yufeng
		  and da Silva, Rafael Ferreira and Filgueira, Rosa},
  BookTitle	= {2022 IEEE/ACM Workshop on Workflows in Support of
		  Large-Scale Science (WORKS)},
  Title		= {Novel Proposals for FAIR, Automated, Recommendable, and
		  Robust Workflows},
  Year		= {2022},
  Volume	= {},
  Number	= {},
  Pages		= {84-92},
  DOI		= {10.1109/WORKS56498.2022.00016},
  Note		= {Funding Acknowledgments: NSF 1839900 and DOE
		  DE-AC02-06CH11357, DE-AC05-00OR22725}
}

An automated Cryo-EM computational environment on the HPC system using Pegasus WMS. Osinski, T.; Rynge, M.; Hong, J. K.; Vahi, K.; Chu, R.; Sul, C.; Deelman, E.; and Kim, B. In 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), pages 60-67, 2022. Funding Acknowledgments: NSF 1664162
doi link bibtex

@InProceedings{	  osinski-works-2022,
  Author	= {Osinski, Tomasz and Rynge, Mats and Hong, James K. and
		  Vahi, Karan and Chu, Ruilin and Sul, Cesar and Deelman, Ewa
		  and Kim, Byoung-Do},
  BookTitle	= {2022 IEEE/ACM Workshop on Workflows in Support of
		  Large-Scale Science (WORKS)},
  Title		= {An automated Cryo-EM computational environment on the HPC
		  system using Pegasus WMS},
  Year		= {2022},
  Volume	= {},
  Number	= {},
  Pages		= {60-67},
  DOI		= {10.1109/WORKS56498.2022.00013},
  Note		= {Funding Acknowledgments: NSF 1664162}
}

Data Integrity Error Localization in Networked Systems with Missing Data. Xin, Y.; Fu, S.; Mandal, A.; Tanaka, R.; Rynge, M.; Vahi, K.; and Deelman, E. In ICC 2022 - IEEE International Conference on Communications, pages 341-346, 2022. Funding Acknowledgments: NSF 1839900
doi link bibtex

@InProceedings{	  xin-icc-2022,
  Author	= {Xin, Yufeng and Fu, Shih-Wen and Mandal, Anirban and
		  Tanaka, Ryan and Rynge, Mats and Vahi, Karan and Deelman,
		  Ewa},
  BookTitle	= {ICC 2022 - IEEE International Conference on
		  Communications},
  Title		= {Data Integrity Error Localization in Networked Systems
		  with Missing Data},
  Year		= {2022},
  Volume	= {},
  Number	= {},
  Pages		= {341-346},
  DOI		= {10.1109/ICC45855.2022.9838996},
  Note		= {Funding Acknowledgments: NSF 1839900}
}

Accelerating Scientific Workflows on HPC Platforms with In Situ Processing. Do, T. M. A.; Pottier, L.; Yildiz, O.; Vahi, K.; Krawczuk, P.; Peterka, T.; and Deelman, E. In 2022 IEEE/ACM 22nd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), pages 1–10, 2022. IEEE Funding Acknowledgments: NSF 1664162, DOE DE-AC02-06CH11357, DE-AC02-05CH11231, DE-SC0012636 and DE-SC0022328
doi link bibtex

@InProceedings{	  do-pottier-ccgrid-2022,
  Title		= {Accelerating Scientific Workflows on HPC Platforms with In
		  Situ Processing},
  Author	= {Do, Tu Mai Anh and Pottier, Lo\"ic and Yildiz, Orcun and
		  Vahi, Karan and Krawczuk, Patrycja and Peterka, Tom and
		  Deelman, Ewa},
  BookTitle	= {2022 IEEE/ACM 22nd International Symposium on Cluster,
		  Cloud and Internet Computing (CCGrid)},
  DOI		= {10.1109/CCGrid54584.2022.00009},
  Pages		= {1--10},
  Year		= {2022},
  Organization	= {IEEE},
  Note		= {Funding Acknowledgments: NSF 1664162, DOE
		  DE-AC02-06CH11357, DE-AC02-05CH11231, DE-SC0012636 and
		  DE-SC0022328}
}

2021 (9)

Serverless Containers – Rising Viable Approach to Scientific Workflows. Burkat, K.; Pawlik, M.; Balis, B.; Malawski, M.; Vahi, K.; Rynge, M.; da Silva, R. F.; and Deelman, E. In 2021 IEEE 17th International Conference on eScience (eScience), pages 40-49, 2021.
doi link bibtex

@InProceedings{	  burkat-escience-2021,
  Author	= {Burkat, Krzysztof and Pawlik, Maciej and Balis, Bartosz
		  and Malawski, Maciej and Vahi, Karan and Rynge, Mats and da
		  Silva, Rafael Ferreira and Deelman, Ewa},
  BookTitle	= {2021 IEEE 17th International Conference on eScience
		  (eScience)},
  Title		= {Serverless Containers – Rising Viable Approach to
		  Scientific Workflows},
  Year		= {2021},
  Volume	= {},
  Number	= {},
  Pages		= {40-49},
  DOI		= {10.1109/eScience51609.2021.00014}
}

A Case Study in Scientific Reproducibility from the Event Horizon Telescope (EHT). Ketron, R.; Leonard, J.; Roachell, B.; Patel, R.; White, R.; Caíno-Lores, S.; Tan, N.; Miles, P.; Vahi, K.; Deelman, E.; Brown, D.; and Taufer, M. In 2021 IEEE 17th International Conference on eScience (eScience), pages 249-250, 2021. Funding Acknowledgments: NSF 2041977, 2041901, 2041878
doi link bibtex

@InProceedings{	  ketron-escience-2021,
  Author	= {Ketron, R. and Leonard, J. and Roachell, B. and Patel, R.
		  and White, R. and Caíno-Lores, S. and Tan, N. and Miles,
		  P. and Vahi, K. and Deelman, E. and Brown, D. and Taufer,
		  M.},
  BookTitle	= {2021 IEEE 17th International Conference on eScience
		  (eScience)},
  Title		= {A Case Study in Scientific Reproducibility from the Event
		  Horizon Telescope (EHT)},
  Year		= {2021},
  Volume	= {},
  Number	= {},
  Pages		= {249-250},
  DOI		= {10.1109/eScience51609.2021.00045},
  Note		= {Funding Acknowledgments: NSF 2041977, 2041901, 2041878}
}

Root Cause Analysis of Data Integrity Errors in Networked Systems with Incomplete Information. Xin, Y.; Fu, S.; Mandal, A.; Baldin, I.; Tanaka, R.; Rynge, M.; Vahi, K.; Deelman, E.; Abhinit, I.; and Von, W. In 2021 International Conference on Information and Communication Technology Convergence (ICTC), pages 735-740, 2021.
doi link bibtex

@InProceedings{	  xin-ictc-2021,
  Author	= {Xin, Yufeng and Fu, Shih-Wen and Mandal, Anirban and
		  Baldin, Ilya and Tanaka, Ryan and Rynge, Mats and Vahi,
		  Karan and Deelman, Ewa and Abhinit, Ishan and Von, Welch},
  BookTitle	= {2021 International Conference on Information and
		  Communication Technology Convergence (ICTC)},
  Title		= {Root Cause Analysis of Data Integrity Errors in Networked
		  Systems with Incomplete Information},
  Year		= {2021},
  Volume	= {},
  Number	= {},
  Pages		= {735-740},
  DOI		= {10.1109/ICTC52510.2021.9621124}
}

Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. Brown, D.; Vahi, K.; Taufer, M.; Welch, V.; and Deelman, E. Computing in Science & Engineering. 2021. Funding Acknowledgment: NSF 1664162, NSF 1823405
doi link bibtex

@Article{	  brown2021reproducing,
  Title		= {Reproducing GW150914: the first observation of
		  gravitational waves from a binary black hole merger},
  Author	= {Brown, Duncan and Vahi, Karan and Taufer, Michela and
		  Welch, Von and Deelman, Ewa},
  Journal	= {Computing in Science \& Engineering},
  Year		= {2021},
  Publisher	= {IEEE},
  DOI		= {10.1109/MCSE.2021.3059232},
  Note		= {Funding Acknowledgment: NSF 1664162, NSF 1823405}
}

Blueprint: Cyberinfrastructure Center of Excellence. Deelman, E.; Mandal, A.; Murillo, A. P.; Nabrzyski, J.; Pascucci, V.; Ricci, R.; Baldin, I.; Sons, S.; Christopherson, L.; Vardeman, C.; Ferreira da Silva, R.; Wyngaard, J.; Petruzza, S.; Rynge, M.; Vahi, K.; Whitcup, W. R.; Drake, J.; and Scott, E. Zenodo. 2021.
doi link bibtex

@Article{	  deelman2021blueprint,
  Title		= {{Blueprint: Cyberinfrastructure Center of Excellence}},
  Author	= {Deelman, Ewa and Mandal, Anirban and Murillo, Angela P.
		  and Nabrzyski, Jarek and Pascucci, Valerio and Ricci,
		  Robert and Baldin, Ilya and Sons, Susan and Christopherson,
		  Laura and Vardeman, Charles and Ferreira da Silva, Rafael
		  and Wyngaard, Jane and Petruzza, Steve and Rynge, Mats and
		  Vahi, Karan and Whitcup, Wendy R. and Drake, Josh and
		  Scott, Erik},
  Journal	= {Zenodo},
  Year		= {2021},
  DOI		= {10.5281/zenodo.4587866}
}

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. Ferreira da Silva, R.; Casanova, H.; Chard, K.; Coleman, T.; Laney, D.; Ahn, D.; Jha, S.; Howell, D.; Soiland-Reys, S.; Altintas, I.; Thain, D.; Filgueira, R.; Babuji, Y.; Badia, R. M.; Balis, B.; Caino-Lores, S.; Callaghan, S.; Coppens, F.; Crusoe, M. R.; De, K.; Di Natale, F.; Do, T. M. A.; Enders, B.; Fahringer, T.; Fouilloux, A.; Fursin, G.; Gaignard, A.; Ganose, A.; Garijo, D.; Gesing, S.; Goble, C.; Hasan, A.; Huber, S.; Katz, D. S.; Leser, U.; Lowe, D.; Ludaescher, B.; Maheshwari, K.; Malawski, M.; Mayani, R.; Mehta, K.; Merzky, A.; Munson, T.; Ozik, J.; Pottier, L.; Ristov, S.; Roozmeh, M.; Souza, R.; Suter, F.; Tovar, B.; Turilli, M.; Vahi, K.; Vidal-Torreira, A.; Whitcup, W.; Wilde, M.; Williams, A.; Wolf, M.; and Wozniak, J. June 2021.
doi link bibtex

@Misc{		  wcs2021technical,
  Author	= {Ferreira da Silva, Rafael and Casanova, Henri and Chard,
		  Kyle and Coleman, Tain\={a} and Laney, Dan and Ahn, Dong
		  and Jha, Shantenu and Howell, Dorran and Soiland-Reys,
		  Stian and Altintas, Ilkay and Thain, Douglas and Filgueira,
		  Rosa and Babuji, Yadu and Badia, Rosa M. and Balis, Bartosz
		  and Caino-Lores, Silvina and Callaghan, Scott and Coppens,
		  Frederik and Crusoe, Michael R. and De, Kaushik and Di
		  Natale, Frank and Do, Tu M. A. and Enders, Bjoern and
		  Fahringer, Thomas and Fouilloux, Anne and Fursin, Grigori
		  and Gaignard, Alban and Ganose, Alex and Garijo, Daniel and
		  Gesing, Sandra and Goble, Carole and Hasan, Adil and Huber,
		  Sebastiaan and Katz, Daniel S. and Leser, Ulf and Lowe,
		  Douglas and Ludaescher, Bertram and Maheshwari, Ketan and
		  Malawski, Maciej and Mayani, Rajiv and Mehta, Kshitij and
		  Merzky, Andre and Munson, Todd and Ozik, Jonathan and
		  Pottier, Lo\"{i}c and Ristov, Sashko and Roozmeh, Mehdi and
		  Souza, Renan and Suter, Fr\'ed\'eric and Tovar, Benjamin
		  and Turilli, Matteo and Vahi, Karan and Vidal-Torreira,
		  Alvaro and Whitcup, Wendy and Wilde, Michael and Williams,
		  Alan and Wolf, Matthew and Wozniak, Justin},
  Title		= {{Workflows Community Summit: Advancing the
		  State-of-the-art of Scientific Workflows Management Systems
		  Research and Development}},
  Month		= {June},
  Year		= {2021},
  Publisher	= {Zenodo},
  DOI		= {10.5281/zenodo.4915801}
}

Workflows Community Summit: Bringing the Scientific Workflows Community Together. Ferreira da Silva, R.; Casanova, H.; Chard, K.; Laney, D.; Ahn, D.; Jha, S.; Goble, C.; Ramakrishnan, L.; eerson , L.; Enders, B.; Thain, D.; Altintas, I.; Babuji, Y.; Badia, R.; Bonazzi, V.; Coleman, T.; Crusoe, M.; Deelman, E.; Di Natale, F.; Di Tommaso, P.; Fahringer, T.; Filgueira, R.; Fursin, G.; Ganose, A.; Gruning, B.; Katz, D. S.; Kuchar, O.; Kupresanin, A.; Ludascher, B.; Maheshwari, K.; Mattoso, M.; Mehta, K.; Munson, T.; Ozik, J.; Peterka, T.; Pottier, L.; Randles, T.; Soiland-Reyes, S.; Tovar, B.; Turilli, M.; Uram, T.; Vahi, K.; Wilde, M.; Wolf, M.; and Wozniak, J. March 2021.
doi link bibtex

@Misc{		  ferreiradasilva2021wcs,
  Author	= {Ferreira da Silva, Rafael and Casanova, Henri and Chard,
		  Kyle and Laney, Dan and Ahn, Dong and Jha, Shantenu and
		  Goble, Carole and Ramakrishnan, Lavanya and eerson, Luc and
		  Enders, Bjoern and Thain, Douglas and Altintas, Ilkay and
		  Babuji, Yadu and Badia, Rosa and Bonazzi, Vivien and
		  Coleman, Taina and Crusoe, Michael and Deelman, Ewa and Di
		  Natale, Frank and Di Tommaso, Paolo and Fahringer, Thomas
		  and Filgueira, Rosa and Fursin, Grigori and Ganose, Alex
		  and Gruning, Bjorn and Katz, Daniel S. and Kuchar, Olga and
		  Kupresanin, Ana and Ludascher, Bertram and Maheshwari,
		  Ketan and Mattoso, Marta and Mehta, Kshitij and Munson,
		  Todd and Ozik, Jonathan and Peterka, Tom and Pottier,
		  Lo\"ic and Randles, Tim and Soiland-Reyes, Stian and Tovar,
		  Benjamin and Turilli, Matteo and Uram, Thomas and Vahi,
		  Karan and Wilde, Michael and Wolf, Matthew and Wozniak,
		  Justin},
  Title		= {{Workflows Community Summit: Bringing the Scientific
		  Workflows Community Together}},
  Month		= mar,
  Year		= {2021},
  Publisher	= {Zenodo},
  DOI		= {10.5281/zenodo.4606958}
}

End-to-End Online Performance Data Capture and Analysis for Scientific Workflows. Papadimitriou, G.; Wang, C.; Vahi, K.; Ferreira da Silva, R.; Mandal, A.; Zhengchun, L.; Mayani, R.; Rynge, M.; Kiran, M.; Lynch, V. E.; Kettimuthu, R.; Deelman, E.; Vetter, J. S.; and Foster, I. Future Generation Computer Systems, 117: 387-400. 2021. Funding Acknowledgments: DOE DE-SC0012636
doi link bibtex

@Article{	  papadimitriou-fgcs-2021,
  Title		= {End-to-End Online Performance Data Capture and Analysis
		  for Scientific Workflows},
  Author	= {Papadimitriou, George and Wang, Cong and Vahi, Karan and
		  Ferreira da Silva, Rafael and Mandal, Anirban and Liu
		  Zhengchun and Mayani, Rajiv and Rynge, Mats and Kiran,
		  Mariam and Lynch, Vickie E. and Kettimuthu, Rajkumar and
		  Deelman, Ewa and Vetter, Jeffrey S. and Foster, Ian},
  Journal	= {Future Generation Computer Systems},
  Year		= {2021},
  Volume	= {117},
  Number	= {},
  Pages		= {387-400},
  DOI		= {10.1016/j.future.2020.11.024},
  Note		= {Funding Acknowledgments: DOE DE-SC0012636}
}

The Pegasus Workflow Management System: Translational Computer Science in Practice. Deelman, E.; Ferreira da Silva, R.; Vahi, K.; Rynge, M.; Mayani, R.; Tanaka, R.; Whitcup, W.; and Livny, M. Journal of Computational Science, 52: 101200. 2021. Funding Acknowledgments: NSF 1664162
doi link bibtex 1 download

@Article{	  deelman2020jocs,
  Title		= {The Pegasus Workflow Management System: Translational
		  Computer Science in Practice},
  Author	= {Deelman, Ewa and Ferreira da Silva, Rafael and Vahi, Karan
		  and Rynge, Mats and Mayani, Rajiv and Tanaka, Ryan and
		  Whitcup, Wendy and Livny, Miron},
  Journal	= {Journal of Computational Science},
  Volume	= {52},
  Number	= {},
  Pages		= {101200},
  Year		= {2021},
  DOI		= {10.1016/j.jocs.2020.101200},
  Note		= {Funding Acknowledgments: NSF 1664162}
}

2020 (2)

Workflow Submit Nodes as a Service on Leadership Class Systems. Papadimitriou, G.; Vahi, K.; Kincl, J.; Anantharaj, V.; Deelman, E.; and Wells, J. In Proceedings of the Practice and Experience in Advanced Research Computing, of PEARC '20, New York, NY, USA, 2020. Association for Computing Machinery Funding Acknowledgments: DOE DESC0012636

Workflow Submit Nodes as a Service on Leadership Class Systems [link]

Paper doi link bibtex

@InProceedings{	  papadimitriou-pearc-2020,
  Author	= {Papadimitriou, George and Vahi, Karan and Kincl, Jason and
		  Anantharaj, Valentine and Deelman, Ewa and Wells, Jack},
  Title		= {Workflow Submit Nodes as a Service on Leadership Class
		  Systems},
  Year		= {2020},
  ISBN		= {978-1-4503-6689-2/20/07},
  Publisher	= {Association for Computing Machinery},
  Address	= {New York, NY, USA},
  URL		= {http://doi.acm.org/10.1145/3311790.3396671},
  DOI		= {10.1145/3311790.3396671},
  BookTitle	= {Proceedings of the Practice and Experience in Advanced
		  Research Computing},
  articleno	= {},
  numpages	= {},
  Location	= {Portland, OR, USA},
  Series	= {PEARC '20},
  Note		= {Funding Acknowledgments: DOE DESC0012636}
}

Gearing the DECam Analysis Pipeline for Multi-Messenger Astronomy Using Pegasus Workflows. Vahi, K.; Goldstein, D.; Papadimitriou, G.; Nugent, P.; and Deelman, E. In Pizzo, R.; Deul, E.; Mol, J.; de Plaa , J.; and Verkouter, H., editor(s), Astronomical Data Analysis Software and Systems XXIX, volume 527, of Astronomical Society of the Pacific Conference Series, pages 631, January 2020. Funding Acknowledgments: NSF 1664162, DOE DESC0012636
link bibtex

@InProceedings{	  vahi-adass-2020,
  Author	= {{Vahi}, K. and {Goldstein}, D. and {Papadimitriou}, G. and
		  {Nugent}, P. and {Deelman}, E.},
  Title		= "{Gearing the DECam Analysis Pipeline for Multi-Messenger
		  Astronomy Using Pegasus Workflows}",
  BookTitle	= {Astronomical Data Analysis Software and Systems XXIX},
  Year		= 2020,
  Editor	= {{Pizzo}, R. and {Deul}, E.~R. and {Mol}, J.~D. and {de
		  Plaa}, J. and {Verkouter}, H.},
  Series	= {Astronomical Society of the Pacific Conference Series},
  Volume	= {527},
  Month		= jan,
  Pages		= {631},
  adsurl	= {https://ui.adsabs.harvard.edu/abs/2020ASPC..527..631V},
  adsnote	= {Provided by the SAO/NASA Astrophysics Data System},
  Note		= {Funding Acknowledgments: NSF 1664162, DOE DESC0012636}
}

2019 (10)

Applicability Study of the PRIMAD Model to LIGO Gravitational Wave Search Workflows. Chapp, D.; Rorabaugh, D.; Brown, D. A.; Deelman, E.; Vahi, K.; Welch, V.; and Taufer, M. In Proceedings of the 2nd International Workshop on Practical Reproducible Evaluation of Computer Systems (P-RECS'19), pages 1–6, 2019.
doi link bibtex 4 downloads

@InProceedings{	  chap2019precs,
  Author	= {Chapp, Dylan and Rorabaugh, Danny and Brown, Duncan A. and
		  Deelman, Ewa and Vahi, Karan and Welch, Von and Taufer,
		  Michela},
  Title		= {Applicability Study of the PRIMAD Model to LIGO
		  Gravitational Wave Search Workflows},
  Year		= {2019},
  DOI		= {10.1145/3322790.3330591},
  BookTitle	= {Proceedings of the 2nd International Workshop on Practical
		  Reproducible Evaluation of Computer Systems (P-RECS'19)},
  Pages		= {1–6}
}

Exploration of Workflow Management Systems Emerging Features from Users Perspectives. Mitchell, R.; Pottier, L.; Jacobs, S.; Ferreira da Silva, R.; Rynge, M.; Vahi, K.; and Deelman, E. In First International Workshop on Big Data Tools, Methods, and Use Cases for Innovative Scientific Discovery (BTSD), pages 4537–4544, 2019. Funding Acknowledgments: NSF 1842042
doi link bibtex

@InProceedings{	  mitchell2019btsd,
  Title		= {Exploration of Workflow Management Systems Emerging
		  Features from Users Perspectives},
  Author	= {Mitchell, Ryan and Pottier, Lo\"ic and Jacobs, Steve and
		  Ferreira da Silva, Rafael and Rynge, Mats and Vahi, Karan
		  and Deelman, Ewa},
  BookTitle	= {First International Workshop on Big Data Tools, Methods,
		  and Use Cases for Innovative Scientific Discovery (BTSD)},
  Year		= {2019},
  Pages		= {4537--4544},
  DOI		= {10.1109/BigData47090.2019.9005494},
  Note		= {Funding Acknowledgments: NSF 1842042}
}

Cyberinfrastructure Center of Excellence Pilot: Connecting Large Facilities Cyberinfrastructure. Deelman, E.; Mandal, A.; Pascucci, V.; Sons, S.; Wyngaard, J.; Vardeman II, C. F; Petruzza, S.; Baldin, I.; Christopherson, L.; Mitchell, R.; Pottier, L.; Rynge, M.; Scott, E.; Vahi, K.; Kogank, M.; Mann, J. A; Gulbransen, T.; Allen, D.; Barlow, D.; Bonarrigo, S.; Clark, C.; Goldman, L.; Goulden, T.; Harvey, P.; Hulsander, D.; Jacob, S.; Laney, C.; Lobo-Padilla, I.; Sampson, J.; Staarmann, J.; and Stone, S. In 15th International Conference on eScience (eScience), 2019. Funding Acknowledgments: NSF 1842042
link bibtex

@InProceedings{	  deelman-escience-2019,
  Title		= {Cyberinfrastructure Center of Excellence Pilot: Connecting
		  Large Facilities Cyberinfrastructure},
  Author	= {Deelman, Ewa and Mandal, Anirban and Pascucci, Valerio and
		  Sons, Susan and Wyngaard, Jane and Vardeman II, Charles F
		  and Petruzza, Steve and Baldin, Ilya and Christopherson,
		  Laura and Mitchell, Ryan and Pottier, Lo\"ic and Rynge,
		  Mats and Scott, Erik and Vahi, Karan and Kogank, Marina and
		  Mann, Jasmine A and Gulbransen, Tom and Allen, Daniel and
		  Barlow, David and Bonarrigo, Santiago and Clark, Chris and
		  Goldman, Leslie and Goulden, Tristan and Harvey, Phil and
		  Hulsander, David and Jacob, Steve and Laney, Christine and
		  Lobo-Padilla, Ivan and Sampson, Jeremey and Staarmann, John
		  and Stone, Steve},
  BookTitle	= {15th International Conference on eScience (eScience)},
  Year		= {2019},
  Location	= {San Diego, CA, USA},
  Pages		= {},
  DOI		= {},
  Note		= {Funding Acknowledgments: NSF 1842042}
}

Custom Execution Environments with Containers in Pegasus-enabled Scientific Workflows. Vahi, K.; Rynge, M.; Papadimitriou, G.; Brown, D.; Mayani, R.; Ferreira da Silva, R.; Deelman, E.; Mandal, A.; Lyons, E.; and Zink, M. In 15th International Conference on eScience (eScience), pages 281–290, 2019. Funding Acknowledgments: NSF 1664162, NSF 1826997, NSF 1443047
doi link bibtex

@InProceedings{	  vahi-escience-2019,
  Title		= {Custom Execution Environments with Containers in
		  Pegasus-enabled Scientific Workflows},
  Author	= {Vahi, Karan and Rynge, Mats and Papadimitriou, George and
		  Brown, Duncan and Mayani, Rajiv and Ferreira da Silva,
		  Rafael and Deelman, Ewa and Mandal, Anirban and Lyons, Eric
		  and Zink, Michael},
  BookTitle	= {15th International Conference on eScience (eScience)},
  Year		= {2019},
  Location	= {San Diego, CA, USA},
  Pages		= {281--290},
  DOI		= {10.1109/eScience.2019.00039},
  Note		= {Funding Acknowledgments: NSF 1664162, NSF 1826997, NSF
		  1443047}
}

Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. Rynge, M.; Vahi, K.; Deelman, E.; Mandal, A.; Baldin, I.; Bhide, O.; Heiland, R.; Welch, V.; Hill, R.; Poehlman, W. L.; and Feltus, F. A. In Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning), of PEARC '19, pages 17:1–17:8, New York, NY, USA, 2019. ACM Funding Acknowledgments: NSF 1642070, NSF 1642053, NSF 1642090. Best Paper in Advanced Research Computing Software and Applications Track. The Phil Andrews Most Transformative Contribution Award.

Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences [link]

Paper doi link bibtex

@InProceedings{	  rynge-pearc-2019,
  Author	= {Rynge, Mats and Vahi, Karan and Deelman, Ewa and Mandal,
		  Anirban and Baldin, Ilya and Bhide, Omkar and Heiland,
		  Randy and Welch, Von and Hill, Raquel and Poehlman, William
		  L. and Feltus, F. Alex},
  Title		= {Integrity Protection for Scientific Workflow Data:
		  Motivation and Initial Experiences},
  BookTitle	= {Proceedings of the Practice and Experience in Advanced
		  Research Computing on Rise of the Machines (Learning)},
  Series	= {PEARC '19},
  Year		= {2019},
  ISBN		= {978-1-4503-7227-5},
  Location	= {Chicago, IL, USA},
  Pages		= {17:1--17:8},
  articleno	= {17},
  numpages	= {8},
  URL		= {http://doi.acm.org/10.1145/3332186.3332222},
  DOI		= {10.1145/3332186.3332222},
  acmid		= {3332222},
  Publisher	= {ACM},
  Address	= {New York, NY, USA},
  Note		= {Funding Acknowledgments: NSF 1642070, NSF 1642053, NSF
		  1642090. Best Paper in Advanced Research Computing Software
		  and Applications Track. The Phil Andrews Most
		  Transformative Contribution Award.}
}

Genetic analyses of diverse populations improves discovery for complex traits. Wojcik, G. L; Graff, M.; Nishimura, K. K; Tao, R.; Haessler, J.; Gignoux, C. R; Highland, H. M; Patel, Y. M; Sorokin, E. P; Avery, C. L; Belbin, G. M.; Bien, S. A.; Cheng, I.; Cullina, S.; Hodonsky, C. J.; Hu, Y.; Huckins, L. M.; Jeff, J.; Justice, A. E.; Kocarnik, J. M.; Lim, U.; Lin, B. M.; Lu, Y.; Nelson, S. C.; Park, S. L.; Poisner, H.; Preuss, M. H.; Richard, M. A.; Schurmann, C.; Setiawan, V. W.; Sockell, A.; Vahi, K.; Verbanck, M.; Vishnu, A.; Walker, R. W.; Young, K. L.; Zubair, N.; Acuña-Alonso, V.; Ambite, J. L.; Barnes, K. C.; Boerwinkle, E.; Bottinger, E. P.; Bustamante, C. D.; Caberto, C.; Canizales-Quinteros, S.; Conomos, M. P.; Deelman, E.; Do, R.; Doheny, K.; Fernández-Rhodes, L.; Fornage, M.; Hailu, B.; Heiss, G.; Henn, B. M.; Hindorff, L. A.; Jackson, R. D.; Laurie, C. A.; Laurie, C. C.; Li, Y.; Lin, D.; Moreno-Estrada, A.; Nadkarni, G.; Norman, P. J.; Pooler, L. C.; Reiner, A. P.; Romm, J.; Sabatti, C.; Sandoval, K.; Sheng, X.; Stahl, E. A.; Stram, D. O.; Thornton, T. A.; Wassel, C. L.; Wilkens, L. R.; Winkler, C. A.; Yoneyama, S.; Buyske, S.; Haiman, C. A.; Kooperberg, C.; Marchand, L.; Loos, R. J. F.; Matise, T. C.; North, K. E.; Peters, U.; Kenny, E. E.; and Carlson, C. S. Nature, 570: 514–518. 2019.
doi link bibtex 8 downloads

@Article{	  wojcik2019genetic,
  Title		= {Genetic analyses of diverse populations improves discovery
		  for complex traits},
  Author	= {Wojcik, Genevieve L and Graff, Mariaelisa and Nishimura,
		  Katherine K and Tao, Ran and Haessler, Jeffrey and Gignoux,
		  Christopher R and Highland, Heather M and Patel, Yesha M
		  and Sorokin, Elena P and Avery, Christy L and Gillian M.
		  Belbin and Stephanie A. Bien and Iona Cheng and Sinead
		  Cullina and Chani J. Hodonsky and Yao Hu and Laura M.
		  Huckins and Janina Jeff and Anne E. Justice and Jonathan M.
		  Kocarnik and Unhee Lim and Bridget M. Lin and Yingchang Lu
		  and Sarah C. Nelson and Sung-Shim L. Park and Hannah
		  Poisner and Michael H. Preuss and Melissa A. Richard and
		  Claudia Schurmann and Veronica W. Setiawan and Alexandra
		  Sockell and Karan Vahi and Marie Verbanck and Abhishek
		  Vishnu and Ryan W. Walker and Kristin L. Young and Niha
		  Zubair and Victor Acuña-Alonso and Jose Luis Ambite and
		  Kathleen C. Barnes and Eric Boerwinkle and Erwin P.
		  Bottinger and Carlos D. Bustamante and Christian Caberto
		  and Samuel Canizales-Quinteros and Matthew P. Conomos and
		  Ewa Deelman and Ron Do and Kimberly Doheny and Lindsay
		  Fernández-Rhodes and Myriam Fornage and Benyam Hailu and
		  Gerardo Heiss and Brenna M. Henn and Lucia A. Hindorff and
		  Rebecca D. Jackson and Cecelia A. Laurie and Cathy C.
		  Laurie and Yuqing Li and Dan-Yu Lin and Andres
		  Moreno-Estrada and Girish Nadkarni and Paul J. Norman and
		  Loreall C. Pooler and Alexander P. Reiner and Jane Romm and
		  Chiara Sabatti and Karla Sandoval and Xin Sheng and Eli A.
		  Stahl and Daniel O. Stram and Timothy A. Thornton and
		  Christina L. Wassel and Lynne R. Wilkens and Cheryl A.
		  Winkler and Sachi Yoneyama and Steven Buyske and
		  Christopher A. Haiman and Charles Kooperberg and Le
		  Marchand and Ruth J. F. Loos and Tara C. Matise and Kari E.
		  North and Ulrike Peters and Eimear E. Kenny and Christopher
		  S. Carlson},
  Journal	= {Nature},
  Volume	= {570},
  Pages		= {514--518},
  Year		= {2019},
  Publisher	= {Nature Publishing Group},
  DOI		= {10.1038/s41586-019-1310-4}
}

The Evolution of the Pegasus Workflow Management Software. Deelman, E.; Vahi, K.; Rynge, M.; Mayani, R.; Ferreira da Silva, R.; Papadimitriou, G.; and Livny, M. Computing in Science Engineering, 21(4): 22–36. 2019. Funding Acknowledgments: NSF 1664162, NSF 1148515, DOE DESC0012636, NSF 1642053
doi link bibtex

@Article{	  deelman-cise-2019,
  Title		= {The Evolution of the Pegasus Workflow Management
		  Software},
  Author	= {Deelman, Ewa and Vahi, Karan and Rynge, Mats and Mayani,
		  Rajiv and Ferreira da Silva, Rafael and Papadimitriou,
		  George and Livny, Miron},
  Journal	= {Computing in Science Engineering},
  Volume	= {21},
  Number	= {4},
  Pages		= {22--36},
  Year		= {2019},
  DOI		= {10.1109/MCSE.2019.2919690},
  Note		= {Funding Acknowledgments: NSF 1664162, NSF 1148515, DOE
		  DESC0012636, NSF 1642053}
}

A Secure Gateway for Enabling ASIC Design Collaborations. Bogol, S.; Brenner, P.; Brinckman, A.; Deelman, E.; Ferreira da Silva, R.; Gupta, S.; Nabrzyski, J.; Park, S.; Perez, D.; Rynge, M.; Taylor, I.; Vahi, K.; Werf, M. V.; Sarah, R.; and Wyngaard, S. In 11th International Workshop on Science Gateways (IWSG 2019), 2019. Funding Acknowledgments: DARPA HR0011-16-C-0043
link bibtex

@InProceedings{	  bogol-iwsg-2019,
  Title		= {A Secure Gateway for Enabling ASIC Design Collaborations},
  Author	= {Bogol, Steve and Brenner, Paul and Brinckman, Adam and
		  Deelman, Ewa and Ferreira da Silva, Rafael and Gupta,
		  Sandeep and Nabrzyski, Jarek and Park, Soowang and Perez,
		  Damian and Rynge, Mats and Taylor, Ian and Vahi, Karan and
		  Werf, Matt Vander and Rucker Sarah and Wyngaard,
		  Sebastian},
  BookTitle	= {11th International Workshop on Science Gateways (IWSG
		  2019)},
  Year		= {2019},
  Pages		= {},
  DOI		= {},
  Note		= {Funding Acknowledgments: DARPA HR0011-16-C-0043}
}

Workflows using Pegasus: Enabling Dark Energy Survey Pipelines. Vahi, K.; Wang, M. H.; Chang, C.; Dodelson, S.; Rynge, M.; and Deelman, E. Astronomical Data Analysis Software and Systems XXVIII, 523: 689–692. 2019. Funding Acknowledgments: NSF 1664162
link bibtex

@Article{	  2018-vahi-adass-weak-leansing,
  Title		= {Workflows using Pegasus: Enabling Dark Energy Survey
		  Pipelines},
  Author	= {Vahi, Karan and Wang, Michael H. and Chang, Chihway and
		  Dodelson, Scott and Rynge, Mats and Deelman, Ewa},
  Journal	= {Astronomical Data Analysis Software and Systems XXVIII},
  Volume	= {523},
  Year		= {2019},
  Pages		= {689--692},
  Note		= {Funding Acknowledgments: NSF 1664162}
}

Collaborative Circuit Designs using the CRAFT Repository. Brinckman, A.; Deelman, E.; Gupta, S.; Nabrzyski, J.; Park, S.; Ferreira da Silva, R.; Taylor, I. J.; and Vahi, K. Future Generation Computer Systems, 94: 841–853. 2019. Funding Acknowledgments: DARPA HR0011-16-C-0043
doi link bibtex

@Article{	  brinckman-fgcs-2018,
  Title		= {Collaborative Circuit Designs using the CRAFT Repository},
  Author	= {Brinckman, Adam and Deelman, Ewa and Gupta, Sandeep and
		  Nabrzyski, Jarek and Park, Soowang and Ferreira da Silva,
		  Rafael and Taylor, Ian J. and Vahi, Karan},
  Journal	= {Future Generation Computer Systems},
  Volume	= {94},
  Number	= {},
  Pages		= {841--853},
  Year		= {2019},
  DOI		= {10.1016/j.future.2018.01.018},
  Note		= {Funding Acknowledgments: DARPA HR0011-16-C-0043}
}

2018 (5)

Combating Workflow Failures with Integrity-based Checkpoints and Blockchain. Bhide, O.; Hill, R.; Vahi, K.; Rynge, M.; and Velch, V. In 6th International Workshop on Distributed Storage and Blockchain Technologies for Big Data, 2018. Funding Acknowledgments: NSF 1642070, 1642053, and 1642090
link bibtex

@InProceedings{	  2108-bhide-workflows-blockchain,
  Title		= {Combating Workflow Failures with Integrity-based
		  Checkpoints and Blockchain},
  Author	= {Bhide, Omkar and Hill, Raquel and Vahi, Karan and Rynge,
		  Mats and Velch, Von},
  BookTitle	= {6th International Workshop on Distributed Storage and
		  Blockchain Technologies for Big Data},
  Year		= {2018},
  Note		= {Funding Acknowledgments: NSF 1642070, 1642053, and
		  1642090}
}

Enabling Data Analytics Workflows using Node-Local Storage. Do, T. M. A.; Jiang, M.; Gallagher, B.; Chu, A.; Harrison, C.; Vahi, K.; and Deelman, E. In The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC18), Poster, 2018. Funding Acknowledgments: LLNL-ABS-755833 DE-AC52-07NA27344, NSF 1741040
link bibtex

@InProceedings{	  do-sc-18,
  Title		= {Enabling Data Analytics Workflows using Node-Local
		  Storage},
  Author	= {Do, Tu Mai Anh and Jiang, Ming and Gallagher, Brian and
		  Chu, Albert and Harrison, Cyrus and Vahi, Karan and
		  Deelman, Ewa},
  BookTitle	= {The International Conference for High Performance
		  Computing, Networking, Storage, and Analysis (SC18),
		  Poster},
  Year		= {2018},
  Note		= {Funding Acknowledgments: LLNL-ABS-755833
		  DE-AC52-07NA27344, NSF 1741040}
}

CyberShake Models of Seismic Hazards in Southern and Central California. Jordan, T. H.; Callaghan, S.; Graves, R. W.; Wang, F.; Milner, K. R.; Goulet, C. A.; Maechling, P. J.; Olsen, K. B.; Cui, Y.; Juve, G.; Vahi, K.; Yu, J.; Deelman, E.; and Gill, D. Seismological Research Letters, 89(2B): 875–876. 2018.
link bibtex

@Article{	  jordan-srl-2018,
  Title		= {CyberShake Models of Seismic Hazards in Southern and
		  Central California},
  Author	= {Jordan, T. H. and Callaghan, S. and Graves, R. W. and
		  Wang, F. and Milner, K. R. and Goulet, C. A. and Maechling,
		  P. J. and Olsen, K. B. and Cui, Y. and Juve, G. and Vahi,
		  K. and Yu, J. and Deelman, E. and Gill, D.},
  Journal	= {Seismological Research Letters},
  Volume	= {89},
  Number	= {2B},
  Pages		= {875--876},
  Year		= {2018},
  DOI		= {}
}

CyberShake Models of Seismic Hazards in Southern and Central California. Jordan, T. H.; Callaghan, S.; Graves, R. W.; Wang, F.; Milner, K. R.; Goulet, C. A.; Maechling, P. J.; Olsen, K. B.; Cui, Y.; Juve, G.; Vahi, K.; Yu, J.; Deelman, E.; and Gill, D. In 11th National Conference in Earthquake Engineering, 2018.
link bibtex

@InProceedings{	  jordan-11ncee-2018,
  Title		= {CyberShake Models of Seismic Hazards in Southern and
		  Central California},
  Author	= {Jordan, T. H. and Callaghan, S. and Graves, R. W. and
		  Wang, F. and Milner, K. R. and Goulet, C. A. and Maechling,
		  P. J. and Olsen, K. B. and Cui, Y. and Juve, G. and Vahi,
		  K. and Yu, J. and Deelman, E. and Gill, D.},
  BookTitle	= {11th National Conference in Earthquake Engineering},
  Year		= {2018},
  Pages		= {},
  DOI		= {}
}

Event-Based Triggering and Management of Scientific Workflow Ensembles. Pandey, S.; Vahi, K.; Ferreira da Silva, R.; Deelman, E.; Jian, M.; Harrison, C.; Chu, A.; and Casanova, H. 2018. Poster presented at the HPC Asia 2018: Tokyo, Japan

Event-Based Triggering and Management of Scientific Workflow Ensembles [pdf]

Paper link bibtex

@Misc{		  suraj-hpc-asia18-event-triggers,
  Author	= {Pandey, Suraj and Vahi, Karan and Ferreira da Silva,
		  Rafael and Deelman, Ewa and Jian, Ming and Harrison, Cyrus
		  and Chu, Al and Casanova, Henri},
  Title		= {Event-Based Triggering and Management of Scientific
		  Workflow Ensembles},
  Year		= {2018},
  URL		= {http://sighpc.ipsj.or.jp/HPCAsia2018/poster/post102s2-file1.pdf},
  Note		= {Poster presented at the HPC Asia 2018: Tokyo, Japan}
}

2017 (2)

rvGAHP - Push-based Job Submission using Reverse SSH Connections. Callaghan, S.; Juve, G.; Vahi, K.; Maechling, P. J.; Jordan, T. H.; and Deelman, E. In 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17), 2017. Funding Acknowledgments: NSF 1664162 and 1443047
link bibtex

@InProceedings{	  callaghan-works-2017,
  Title		= {{rvGAHP} - Push-based Job Submission using Reverse SSH
		  Connections},
  Author	= {Callaghan, Scott and Juve, Gideon and Vahi, Karan and
		  Maechling, Philip J. and Jordan, Thomas H. and Deelman,
		  Ewa},
  BookTitle	= {12th Workshop on Workflows in Support of Large-Scale
		  Science (WORKS'17)},
  Year		= {2017},
  Pages		= {},
  DOI		= {},
  Note		= {Funding Acknowledgments: NSF 1664162 and 1443047}
}

Accelerating Circuit Realization via a Collaborative Gateway of Innovations. Taylor, I. J.; Brinckman, A.; Deelman, E.; Ferreira da Silva, R.; Gupta, S.; Nabrzyski, J.; Park, S.; and Vahi, K. In 9th International Workshop on Science Gateways (IWSG 2017), 2017. Funding Acknowledgments: DARPA HR0011-16-C-0043
link bibtex

@InProceedings{	  taylor-iwsg-2017,
  Title		= {Accelerating Circuit Realization via a Collaborative
		  Gateway of Innovations},
  Author	= {Taylor, Ian J. and Brinckman, Adam and Deelman, Ewa and
		  Ferreira da Silva, Rafael and Gupta, Sandeep and Nabrzyski,
		  Jarek and Park, Soowang and Vahi, Karan},
  BookTitle	= {9th International Workshop on Science Gateways (IWSG
		  2017)},
  Year		= {2017},
  Pages		= {},
  DOI		= {},
  Note		= {Funding Acknowledgments: DARPA HR0011-16-C-0043}
}

2016 (3)

Automating Environmental Computing Applications with Scientific Workflows. Ferreira da Silva, R.; Deelman, E.; Filgueira, R.; Vahi, K.; Rynge, M.; Mayani, R.; and Mayer, B. In Environmental Computing Workshop (ECW'16), IEEE 12th International Conference on e-Science, pages 400–406, 2016. Funding Acknowledgments: DOE DESC0012636, NSF ACI SI2-SSI 1148515
doi link bibtex

@InProceedings{	  ferreiradasilva-ecw-2016,
  Author	= {Ferreira da Silva, Rafael and Deelman, Ewa and Filgueira,
		  Rosa and Vahi, Karan and Rynge, Mats and Mayani, Rajiv and
		  Mayer, Benjamin},
  Title		= {Automating Environmental Computing Applications with
		  Scientific Workflows},
  Year		= {2016},
  Note		= {Funding Acknowledgments: DOE DESC0012636, NSF ACI SI2-SSI
		  1148515},
  BookTitle	= {Environmental Computing Workshop (ECW'16), IEEE 12th
		  International Conference on e-Science},
  DOI		= {10.1109/eScience.2016.7870926},
  Pages		= {400--406}
}

Science Automation in Practice: Performance Data Farming in Workflows. Krol, D.; Kitowski, J.; Ferreira da Silva, R.; Juve, G.; Vahi, K.; Rynge, M.; and Deelman, E. In 21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA), 2016. Funding Acknowledgments: DOE DE-SC0012636
doi link bibtex

@InProceedings{	  krol-etfa-2016,
  Author	= {Krol, Dariusz and Kitowski, Jacek and Ferreira da Silva,
		  Rafael and Juve, Gideon and Vahi, Karan and Rynge, Mats and
		  Deelman, Ewa},
  Title		= {Science Automation in Practice: Performance Data Farming
		  in Workflows},
  BookTitle	= {21st IEEE International Conference on Emerging
		  Technologies and Factory Automation (ETFA)},
  Year		= {2016},
  Note		= {Funding Acknowledgments: DOE DE-SC0012636},
  DOI		= {10.1109/ETFA.2016.7733677}
}

Pegasus in the Cloud: Science Automation through Workflow Technologies. Deelman, E.; Vahi, K.; Rynge, M.; Juve, G.; Mayani, R.; and Ferreira da Silva, R. IEEE Internet Computing, 20(1): 70–76. 2016. Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF ACI 1245926, NSF FutureGrid 0910812, NHGRI 1U01 HG006531-01

Pegasus in the Cloud: Science Automation through Workflow Technologies [link]

Paper doi link bibtex

@Article{	  deelman-ic-2016,
  Title		= {Pegasus in the Cloud: Science Automation through Workflow
		  Technologies},
  Author	= {Deelman, Ewa and Vahi, Karan and Rynge, Mats and Juve,
		  Gideon and Mayani, Rajiv and Ferreira da Silva, Rafael},
  Journal	= {IEEE Internet Computing},
  Volume	= {20},
  Number	= {1},
  Pages		= {70--76},
  Year		= {2016},
  Note		= {Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF ACI
		  1245926, NSF FutureGrid 0910812, NHGRI 1U01 HG006531-01},
  URL		= {http://dx.doi.org/10.1109/MIC.2016.15},
  DOI		= {10.1109/MIC.2016.15}
}

2015 (1)

Pegasus: a Workflow Management System for Science Automation. Deelman, E.; Vahi, K.; Juve, G.; Rynge, M.; Callaghan, S.; Maechling, P. J; Mayani, R.; Chen, W.; Ferreira da Silva, R.; Livny, M.; and Wenger, K. Future Generation Computer Systems, 46: 17–35. 2015. Funding Acknowledgements: NSF ACI SDCI 0722019, NSF ACI SI2-SSI 1148515 and NSF OCI-1053575

Pegasus: a Workflow Management System for Science Automation [pdf]

Paper doi link bibtex

@Article{	  deelman-fgcs-2015,
  Author	= {Ewa Deelman and Karan Vahi and Gideon Juve and Mats Rynge
		  and Scott Callaghan and Philip J Maechling and Rajiv Mayani
		  and Weiwei Chen and Ferreira da Silva, Rafael and Miron
		  Livny and Kent Wenger},
  URL		= {http://pegasus.isi.edu/publications/2014/2014-fgcs-deelman.pdf},
  Title		= {Pegasus: a Workflow Management System for Science
		  Automation},
  Journal	= {Future Generation Computer Systems},
  Volume	= {46},
  Pages		= {17--35},
  Year		= {2015},
  Note		= {Funding Acknowledgements: NSF ACI SDCI 0722019, NSF ACI
		  SI2-SSI 1148515 and NSF OCI-1053575},
  DOI		= {10.1016/j.future.2014.10.008}
}

2014 (3)

HUBzero and Pegasus: integrating scientific workflows into science gateways. McLennan, M.; Clark, S.; Deelman, E.; Rynge, M.; Vahi, K.; McKenna, F.; Kearney, D.; and Song, C. Concurrency and Computation: Practice and Experience. 2014. Funding Acknowledgements: OCI SI2-SSI program grant #1148515, OCI SDCI program grant #0722019

HUBzero and Pegasus: integrating scientific workflows into science gateways [link]

Paper doi link bibtex

@Article{	  mclennan2014hubzero,
  Author	= {Michael McLennan and Steven Clark and Ewa Deelman and Mats
		  Rynge and Karan Vahi and Frank McKenna and Derrick Kearney
		  and Carol Song},
  URL		= {http://dx.doi.org/10.1002/cpe.3257},
  DOI		= {10.1002/cpe.3257},
  Title		= {HUBzero and Pegasus: integrating scientific workflows into
		  science gateways},
  Journal	= {Concurrency and Computation: Practice and Experience},
  Year		= {2014},
  Note		= {Funding Acknowledgements: OCI SI2-SSI program grant
		  #1148515, OCI SDCI program grant #0722019}
}

A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions. Srinivasan, S.; Juve, G.; Ferreira da Silva, R.; Vahi, K.; and Deelman, E. In 9th Workshop on Workflows in Support of Large-Scale Science (WORKS), 2014. Funding Acknowledgements: OCI SI2-SSI program grant #1148515

A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions [pdf]

Paper doi link bibtex

@InProceedings{	  srinivasan2014cleanup,
  Author	= {Sudarshan Srinivasan and Gideon Juve and Ferreira da
		  Silva, Rafael and Karan Vahi and Ewa Deelman},
  Title		= {A Cleanup Algorithm for Implementing Storage Constraints
		  in Scientific Workflow Executions},
  BookTitle	= {9th Workshop on Workflows in Support of Large-Scale
		  Science (WORKS)},
  Year		= {2014},
  Note		= {Funding Acknowledgements: OCI SI2-SSI program grant
		  #1148515},
  URL		= {http://pegasus.isi.edu/publications/2014/2014-works.pdf},
  DOI		= {10.1109/WORKS.2014.8}
}

Community Resources for Enabling Research in Distributed Scientific Workflows. Ferreira da Silva, R.; Chen, W.; Juve, G.; Vahi, K.; and Deelman, E. In 10th IEEE International Conference on e-Science (eScience 2014), 2014. Funding Acknowledgements: OCI SI2-SSI program grant #1148515, DOE contract for dv/dt ER26110

Community Resources for Enabling Research in Distributed Scientific Workflows [pdf]

Paper doi link bibtex

@InProceedings{	  silva2014community,
  Author	= {Ferreira da Silva, Rafael and Weiwei Chen and Gideon Juve
		  and Karan Vahi and Ewa Deelman},
  URL		= {http://pegasus.isi.edu/publications/2014/2014-escience.pdf},
  Title		= {Community Resources for Enabling Research in Distributed
		  Scientific Workflows},
  BookTitle	= {10th IEEE International Conference on e-Science (eScience
		  2014)},
  Year		= {2014},
  Note		= {Funding Acknowledgements: OCI SI2-SSI program grant
		  #1148515, DOE contract for dv/dt ER26110},
  DOI		= {10.1109/eScience.2014.44}
}

2013 (4)

Rethinking Data Management for Big Data Scientific Workflows. Vahi, K.; Rynge, M.; Juve, G.; Mayani, R.; and Deelman, E. In Workshop on Big Data and Science: Infrastructure and Services, 2013. Funding Acknowledgments: OCI SDCI program grant #0722019 and OCI SI2-SSI program grant #1148515

Rethinking Data Management for Big Data Scientific Workflows [pdf]

Paper link bibtex

@InProceedings{	  vahi2013rethinking,
  Author	= {Karan Vahi and Mats Rynge and Gideon Juve and Rajiv Mayani
		  and Ewa Deelman},
  URL		= {http://pegasus.isi.edu/publications/2013/Vahi-PegasusLite-IEEE-BigData-2013.pdf},
  Title		= {Rethinking Data Management for Big Data Scientific
		  Workflows},
  BookTitle	= {Workshop on Big Data and Science: Infrastructure and
		  Services},
  Year		= {2013},
  Note		= {Funding Acknowledgments: OCI SDCI program grant #0722019
		  and OCI SI2-SSI program grant #1148515}
}

Bringing Scientific Workflow to the Masses via Pegasus and HUBzero. McLennan, M.; Clark, S.; McKenna, F.; Deelman, E.; Rynge, M.; Vahi, K.; Kearney, D.; and Song, C. In Proceedings of the 5th International Workshop on Science Gateways, 2013. Funding Acknowledgements: NSF grants CBET-0941302, CMMI-0927178, OCI-1148515, and OCI-0943705

Bringing Scientific Workflow to the Masses via Pegasus and HUBzero [pdf]

Paper link bibtex

@InProceedings{	  mclennan2013masses,
  Author	= {Michael McLennan and Steve Clark and Frank McKenna and Ewa
		  Deelman and Mats Rynge and Karan Vahi and Derrick Kearney
		  and Carol Song},
  URL		= {http://pegasus.isi.edu/publications/2013/McLennan_Pegasus_Hubzero.pdf},
  Title		= {Bringing Scientific Workflow to the Masses via Pegasus and
		  HUBzero},
  BookTitle	= {Proceedings of the 5th International Workshop on Science
		  Gateways},
  Year		= {2013},
  Note		= {Funding Acknowledgements: NSF grants CBET-0941302,
		  CMMI-0927178, OCI-1148515, and OCI-0943705}
}

A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows. Vahi, K.; Harvey, I.; Samak, T.; Gunter, D.; Evans, K.; Rogers, D.; Taylor, I.; Goode, M.; Silva, F.; Al-Shakarchi, E.; Mehta, G.; and andrew Jones, E. D. Journal of Grid Computing, 11(3): 381-406. 2013. Funding Acknowledgements: NSF grant OCI-0943705

A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows [link]

Paper link bibtex

@Article{	  vahi2013jgc,
  Author	= {Karan Vahi and Ian Harvey and Taghrid Samak and Daniel
		  Gunter and Kieran Evans and David Rogers and Ian Taylor and
		  Monte Goode and Fabio Silva and Eddie Al-Shakarchi and
		  Gaurang Mehta and Ewa Deelman andrew Jones},
  URL		= {http://link.springer.com/article/10.1007%2Fs10723-013-9265-4},
  Title		= {A Case Study into Using Common Real-Time Workflow
		  Monitoring Infrastructure for Scientific Workflows},
  Journal	= {Journal of Grid Computing},
  Volume	= {11},
  Number	= {3},
  Pages		= {381-406},
  Year		= {2013},
  Note		= {Funding Acknowledgements: NSF grant OCI-0943705}
}

Characterizing and Profiling Scientific Workflows. Juve, G.; Chervenak, A.; Deelman, E.; Bharathi, S.; Mehta, G.; and Vahi, K. Future Generation Computer Systems, 29(3): 682-692. March 2013.

Characterizing and Profiling Scientific Workflows [pdf]

Paper link bibtex

@Article{	  juve2013characterizing,
  Author	= {Gideon Juve and Ann Chervenak and Ewa Deelman and Shishir
		  Bharathi and Gaurang Mehta and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/2013/JuveG-Characterizing.pdf},
  Title		= {Characterizing and Profiling Scientific Workflows},
  Journal	= {Future Generation Computer Systems},
  Volume	= {29},
  Number	= {3},
  Pages		= {682-692},
  Month		= {March},
  Year		= {2013}
}

2012 (2)

A General Approach to Real-time Workflow Monitoring. Vahi, K.; Harvey, I.; Samak, T.; Gunter, D.; Evans, K.; Rogers, D.; Taylor, I.; Goode, M.; Silva, F.; Al-Shakarchi, E.; andrew Jones, G. M.; and Deelman, E. In The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12), 2012. Funding Acknowledgement: NSF OCI-0943705)

A General Approach to Real-time Workflow Monitoring [pdf]

Paper link bibtex

@InProceedings{	  vahi2012monitoring,
  Author	= {Karan Vahi and Ian Harvey and Taghrid Samak and Dan Gunter
		  and Kieran Evans and David Rogers and Ian Taylor and Monte
		  Goode and Fabio Silva and Eddie Al-Shakarchi and Gaurang
		  Mehta andrew Jones and Ewa Deelman},
  URL		= {http://pegasus.isi.edu/publications/2012/Vahi-Stampede-WORKS-2012.pdf},
  Title		= {A General Approach to Real-time Workflow Monitoring},
  BookTitle	= {The 7th Workshop on Workflows in Support of Large-Scale
		  Science (WORKS12)},
  Year		= {2012},
  Note		= {Funding Acknowledgement: NSF OCI-0943705) }
}

Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker. Rynge, M.; Juve, G.; Vahi, K.; Callaghan, S.; Mehta, G.; Maechling, P. J.; and Deelman, E. In XSEDE12, 2012. Funding acknowledgements: NSF OCI-0722019, NSF OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF OCI-1053575

Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker [pdf]

Paper link bibtex

@InProceedings{	  rynge2012pmc,
  Author	= {Mats Rynge and Gideon Juve and Karan Vahi and Scott
		  Callaghan and Gaurang Mehta and Philip J. Maechling and Ewa
		  Deelman},
  URL		= {http://pegasus.isi.edu/publications/2012/XSEDE12-Rynge-pegasus-mpi-cluster.pdf},
  Title		= {Enabling Large-scale Scientific Workflows on Petascale
		  Resources Using MPI Master/Worker},
  BookTitle	= {XSEDE12},
  Year		= {2012},
  Note		= {Funding acknowledgements: NSF OCI-0722019, NSF
		  OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF
		  OCI-1053575}
}

2011 (4)

Failure Prediction and Localization in Large Scientific Workflows. Samak, T.; Gunter, D.; Goode, M.; Deelman, E.; Mehta, G.; Silva, F.; and Vahi, K. In 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), 2011.
link bibtex

@InProceedings{	  samak2011failure,
  Author	= {Taghrid Samak and Dan Gunter and Monte Goode and Ewa
		  Deelman and Gaurang Mehta and Fabio Silva and Karan Vahi},
  Title		= {Failure Prediction and Localization in Large Scientific
		  Workflows},
  BookTitle	= {6th Workshop on Workflows in Support of Large-Scale
		  Science (WORKS 11)},
  Year		= {2011}
}

Online Workflow Management and Performance Analysis with Stampede. Gunter, D.; Deelman, E.; Samak, T.; Brooks, C.; Goode, M.; Juve, G.; Mehta, G.; Moraes, P.; Silva, F.; Swany, M.; and Vahi, K. In 7th International Conference on Network and Service Management (CNSM-2011), 2011.
link bibtex

@InProceedings{	  gunter2011online,
  Author	= {Dan Gunter and Ewa Deelman and Taghrid Samak and
		  Christopher Brooks and Monte Goode and Gideon Juve and
		  Gaurang Mehta and Priscilla Moraes and Fabio Silva and
		  Martin Swany and Karan Vahi},
  Title		= {Online Workflow Management and Performance Analysis with
		  Stampede},
  BookTitle	= {7th International Conference on Network and Service
		  Management (CNSM-2011)},
  Year		= {2011}
}

Online Fault and Anomaly Detection for Large-Scale Scientific Workflows. Samak, T.; Gunter, D.; Deelman, E.; Juve, G.; Mehta, G.; Silva, F.; and Vahi, K. In 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011), 2011. Funding Acknowledgements: DOE DE-AC02-05CH11231, and NSF OCI-0943705
link bibtex

@InProceedings{	  samak2011anomaly,
  Author	= {Taghrid Samak and Dan Gunter and Ewa Deelman and Gideon
		  Juve and Gaurang Mehta and Fabio Silva and Karan Vahi},
  Title		= {Online Fault and Anomaly Detection for Large-Scale
		  Scientific Workflows},
  BookTitle	= {13th IEEE International Conference on High Performance
		  Computing and Communications (HPCC-2011)},
  Year		= {2011},
  Note		= {Funding Acknowledgements: DOE DE-AC02-05CH11231, and NSF
		  OCI-0943705}
}

Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science Application. Callaghan, S.; Maechling, P.; Small, P.; Milner, K.; Juve, G.; Jordan, T. H.; Deelman, E.; Mehta, G.; Vahi, K.; Gunter, D.; and Beattie, K. International Journal of High Performance Computing Applications, 25(3): 274-285. August 2011. Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS 02HQAG0008)
link bibtex

@Article{	  callaghan2011metrics,
  Author	= {Scott Callaghan and Philip Maechling and Patrick Small and
		  Kevin Milner and Gideon Juve and Thomas H. Jordan and Ewa
		  Deelman and Gaurang Mehta and Karan Vahi and Dan Gunter and
		  Keith Beattie},
  Title		= {Metrics for Heterogeneous Scientific Workflows: A Case
		  Study of an Earthquake Science Application},
  Journal	= {International Journal of High Performance Computing
		  Applications},
  Volume	= {25},
  Number	= {3},
  Pages		= {274-285},
  Month		= {August},
  Year		= {2011},
  Note		= {Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF
		  OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS
		  02HQAG0008) }
}

2010 (5)

CyberShake: A Physics-Based Seismic Hazard Model for Southern California. Graves, R.; Jordan, T.; Callaghan, S.; Deelman, E.; Field, E.; Juve, G.; Kesselman, C.; Maechling, P.; Mehta, G.; Milner, K.; Okaya, D.; Small, P.; and Vahi, K. Pure and Applied Geophysics. May 2010. Funding Acknowledgements: NSF OCI-0438712, NSF CCF-0725332

CyberShake: A Physics-Based Seismic Hazard Model for Southern California [pdf]

Paper link bibtex

@Article{	  graves2010cybershake,
  Author	= {Robert Graves and Thomas Jordan and Scott Callaghan and
		  Ewa Deelman and Edward Field and Gideon Juve and Carl
		  Kesselman and Philip Maechling and Gaurang Mehta and Kevin
		  Milner and David Okaya and Patrick Small and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/2010/GravesR-CyberShake.pdf},
  Title		= {CyberShake: A Physics-Based Seismic Hazard Model for
		  Southern California},
  Journal	= {Pure and Applied Geophysics},
  Month		= {May},
  Year		= {2010},
  Note		= {Funding Acknowledgements: NSF OCI-0438712, NSF
		  CCF-0725332}
}

Experiences with Resource Provisioning for Scientific Workflows Using Corral. Juve, G.; Deelman, E.; Vahi, K.; and Mehta, G. Scientific Programming, 18(2): 77-92. April 2010. Funding Acknowledgements: NSF OCI-0943725 and NSF OCI-0749313
link bibtex

@Article{	  juve2010corral,
  Author	= {Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang
		  Mehta},
  Title		= {Experiences with Resource Provisioning for Scientific
		  Workflows Using Corral},
  Journal	= {Scientific Programming},
  Volume	= {18},
  Number	= {2},
  Pages		= {77-92},
  Month		= {April},
  Year		= {2010},
  Note		= {Funding Acknowledgements: NSF OCI-0943725 and NSF
		  OCI-0749313}
}

Data Sharing Options for Scientific Workflows on Amazon EC2. Juve, G.; Deelman, E.; Vahi, K.; Mehta, G.; Berriman, B.; Berman, B. P.; and Maechling, P. J. In 22nd IEEE/ACM Conference on Supercomputing (SC10), 2010. Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626

Data Sharing Options for Scientific Workflows on Amazon EC2 [pdf]

Paper link bibtex

@InProceedings{	  juve2010sc,
  Author	= {Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang
		  Mehta and Bruce Berriman and Benjamin P. Berman and Philip
		  J. Maechling},
  URL		= {http://pegasus.isi.edu/publications/2010/JuveG-DataSharing.pdf},
  Title		= {Data Sharing Options for Scientific Workflows on Amazon
		  EC2},
  BookTitle	= {22nd IEEE/ACM Conference on Supercomputing (SC10)},
  Year		= {2010},
  Note		= {Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019,
		  and NASA NCC5-626}
}

Scaling up Workflow-based Applications. Callaghan, S.; Deelman, E.; Gunter, D.; Juve, G.; Maechling, P.; Brooks, C.; Vahi, K.; Milner, K.; Graves, R.; Field, E.; Okaya, D.; and Jordan, T. Journal of Computer and System Sciences, 76(6): 428-446. September 2010. Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, and NSF OCI-0749313

Scaling up Workflow-based Applications [pdf]

Paper link bibtex

@Article{	  callaghan2010scalingup,
  Author	= {Scott Callaghan and Ewa Deelman and Dan Gunter and Gideon
		  Juve and Philip Maechling and Christopher Brooks and Karan
		  Vahi and Kevin Milner and Robert Graves and Edward Field
		  and David Okaya and Thomas Jordan},
  URL		= {http://pegasus.isi.edu/publications/2010/CallaghanS-ScalingUp.pdf},
  Title		= {Scaling up Workflow-based Applications},
  Journal	= {Journal of Computer and System Sciences},
  Volume	= {76},
  Number	= {6},
  Pages		= {428-446},
  Month		= {September},
  Year		= {2010},
  Note		= {Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF
		  OCI-0722019, and NSF OCI-0749313}
}

Parameterized Specification, Configuration and Execution of Data-intensive Scientific Workflows. Kumar, V. S.; Kurc, T.; Ratnakar, V.; Kim, J.; Mehta, G.; Vahi, K.; Nelson, Y. L.; Sadayappan, P.; Deelman, E.; Gil, Y.; Hall, M.; and Saltz, J. Cluster Computing Journal, 13(3): 315-333. 2010.

Parameterized Specification, Configuration and Execution of Data-intensive Scientific Workflows [pdf]

Paper link bibtex

@Article{	  kumar2010ccj,
  Author	= {Vijay S. Kumar and Tahsin Kurc and Varun Ratnakar and
		  Jihie Kim and Gaurang Mehta and Karan Vahi and Yoonju Lee
		  Nelson and P. Sadayappan and Ewa Deelman and Yolanda Gil
		  and Mary Hall and Joel Saltz},
  URL		= {http://pegasus.isi.edu/publications/2010/Cluster-Computing-2010.pdf},
  Title		= {Parameterized Specification, Configuration and Execution
		  of Data-intensive Scientific Workflows},
  Journal	= {Cluster Computing Journal},
  Volume	= {13},
  Number	= {3},
  Pages		= {315-333},
  Year		= {2010}
}

2009 (2)

Scientific Workflow Applications on Amazon EC2. Juve, G.; Deelman, E.; Vahi, K.; Mehta, G.; Berriman, B.; Berman, B. P.; and Maechling, P. J. In Workshop on Cloud-based Services and Applications, 2009.

Scientific Workflow Applications on Amazon EC2 [pdf]

Paper link bibtex

@InProceedings{	  juve2009ec2,
  Author	= {Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang
		  Mehta and Bruce Berriman and Benjamin P. Berman and Philip
		  J. Maechling},
  URL		= {http://pegasus.isi.edu/publications/2009/JuveG-EC2.pdf},
  Title		= {Scientific Workflow Applications on Amazon EC2},
  BookTitle	= {Workshop on Cloud-based Services and Applications},
  Year		= {2009}
}

An Integrated Framework for Performance-based Optimization of Scientific Workflows. Kumar, V. S.; Sadayappan, P.; Mehta, G.; Vahi, K.; Deelman, E.; Ratnakar, V.; Kim, J.; Gil, Y.; Hall, M. W.; Kurç, T. M.; and Saltz, J. H. In Conference on High Performance and Distributed Computing (HPDC), 2009.

An Integrated Framework for Performance-based Optimization of Scientific Workflows [pdf]

Paper link bibtex

@InProceedings{	  kumar2009optimization,
  Author	= {Vijay S. Kumar and P. Sadayappan and Gaurang Mehta and
		  Karan Vahi and Ewa Deelman and Varun Ratnakar and Jihie Kim
		  and Yolanda Gil and Mary W. Hall and Tahsin M. Kurç and
		  Joel H. Saltz},
  URL		= {http://pegasus.isi.edu/publications/2009/hpdc153-kumar.pdf},
  Title		= {An Integrated Framework for Performance-based Optimization
		  of Scientific Workflows},
  BookTitle	= {Conference on High Performance and Distributed Computing
		  (HPDC)},
  Year		= {2009}
}

2008 (4)

Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake. Callaghan, S.; Maechling, P.; Deelman, E.; Vahi, K.; Mehta, G.; Juve, G.; Milner, K.; Graves, R.; Field, E.; Okaya, D.; Gunter, D.; Beattie, K.; and Jordan, T. In Fourth IEEE International Conference on e-Science (e-Science 2008), 2008.

Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake [pdf]

Paper link bibtex

@InProceedings{	  callaghan2009reducing,
  Author	= {Scott Callaghan and Philip Maechling and Ewa Deelman and
		  Karan Vahi and Gaurang Mehta and Gideon Juve and Kevin
		  Milner and Robert Graves and Edward Field and David Okaya
		  and Dan Gunter and Keith Beattie and Thomas Jordan},
  URL		= {http://pegasus.isi.edu/publications/2008/CallaghanS-MegaWorkflowsCyberShake.pdf},
  Title		= {Reducing Time-to-Solution Using Distributed
		  High-Throughput Mega-Workflows - Experiences from SCEC
		  CyberShake},
  BookTitle	= {Fourth IEEE International Conference on e-Science
		  (e-Science 2008)},
  Year		= {2008}
}

Characterization of Scientific Workflows. Bharathi, S.; Chervenak, A.; Deelman, E.; Mehta, G.; Su, M.; and Vahi, K. In 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08), 2008.

Characterization of Scientific Workflows [pdf]

Paper link bibtex

@InProceedings{	  bharathi2008characterization,
  Author	= {Shishir Bharathi and Ann Chervenak and Ewa Deelman and
		  Gaurang Mehta and Mei-Hui Su and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/2008/bharathi-works08.pdf},
  Title		= {Characterization of Scientific Workflows},
  BookTitle	= {3rd Workshop on Workflows in Support of Large-Scale
		  Science (WORKS08)},
  Year		= {2008}
}

Provenance: The Bridge Between Experiments and Data. Miles, S.; Groth, P.; Deelman, E.; Vahi, K.; Mehta, G.; and Moreau, L. Computing in Science and Engineering, 10(3): 38-46. May 2008.

Provenance: The Bridge Between Experiments and Data [link]

Paper link bibtex

@Article{	  miles2008provenance,
  Author	= {Simon Miles and Paul Groth and Ewa Deelman and Karan Vahi
		  and Gaurang Mehta and Luc Moreau},
  URL		= {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=4488063},
  Title		= {Provenance: The Bridge Between Experiments and Data},
  Journal	= {Computing in Science and Engineering},
  Volume	= {10},
  Number	= {3},
  Pages		= {38-46},
  Month		= {May},
  Year		= {2008}
}

Workflow Task Clustering for Best Effort Systems with Pegasus. Singh, G.; Su, M.; Vahi, K.; Deelman, E.; Berriman, B.; Good, J.; Katz, D. S.; and Mehta, G. In Mardi Gras Conference, 2008.

Workflow Task Clustering for Best Effort Systems with Pegasus [pdf]

Paper link bibtex

@InProceedings{	  singh2008clustering,
  Author	= {Gurmeet Singh and Mei-Hui Su and Karan Vahi and Ewa
		  Deelman and Bruce Berriman and John Good and Daniel S. Katz
		  and Gaurang Mehta},
  URL		= {http://pegasus.isi.edu/publications/2008/MardiGras_v3.pdf},
  Title		= {Workflow Task Clustering for Best Effort Systems with
		  Pegasus},
  BookTitle	= {Mardi Gras Conference},
  Year		= {2008}
}

2007 (7)

. Deelman, E.; Mehta, G.; Singh, G.; Su, M.; and Vahi, K. Pegasus: Mapping Large-Scale Workflows to Distributed Resources. 2007.
link bibtex

@InBook{	  deelman2007pegasusmapping,
  Author	= {Ewa Deelman and Gaurang Mehta and Gurmeet Singh and
		  Mei-Hui Su and Karan Vahi},
  Title		= {Pegasus: Mapping Large-Scale Workflows to Distributed
		  Resources},
  BookTitle	= {Workflows for e-Science},
  Year		= {2007}
}

. Maechling, P.; Deelman, E.; Zhao, L.; Graves, R.; Mehta, G.; Gupta, N.; Mehringer, J.; Kesselman, C.; Callaghan, S.; Okaya, D.; Francoeur, H.; Gupta, V.; Cui, Y.; Vahi, K.; Jordan, T.; and Field, E. SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis Calculations. 2007.
link bibtex

@InBook{	  maechling2007automating,
  Author	= {Philip Maechling and Ewa Deelman and Li Zhao and Robert
		  Graves and Gaurang Mehta and Nitin Gupta and John Mehringer
		  and Carl Kesselman and Scott Callaghan and David Okaya and
		  Hunter Francoeur and Vipin Gupta and Yifeng Cui and Karan
		  Vahi and Thomas Jordan and Edward Field},
  Title		= {SCEC CyberShake Workflows: Automating Probabilistic
		  Seismic Hazard Analysis Calculations},
  BookTitle	= {Workflows for e-Science},
  Year		= {2007}
}

Connecting Scientific Data to Scientific Experiments with Provenance. Miles, S.; Deelman, E.; Groth, P.; Vahi, K.; Mehta, G.; and Moreau, L. In Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007), 2007.

Connecting Scientific Data to Scientific Experiments with Provenance [link]

Paper link bibtex

@InProceedings{	  miles2007connecting,
  Author	= {Simon Miles and Ewa Deelman and Paul Groth and Karan Vahi
		  and Gaurang Mehta and Luc Moreau},
  URL		= {http://portal.acm.org/citation.cfm?id=1332478.1333573},
  Title		= {Connecting Scientific Data to Scientific Experiments with
		  Provenance},
  BookTitle	= {Third IEEE International Conference on e-Science and Grid
		  Computing (e-Science 2007)},
  Year		= {2007}
}

Data Placement for Scientific Applications in Distributed Environments. Chervenak, A.; Deelman, E.; Livny, M.; Su, M.; Schuler, R.; Bharathi, S.; Mehta, G.; and Vahi, K. In Proceedings of Grid Conference 2007, 2007.

Data Placement for Scientific Applications in Distributed Environments [pdf]

Paper link bibtex

@InProceedings{	  chervenak2007placement,
  Author	= {Ann Chervenak and Ewa Deelman and Miron Livny and Mei-Hui
		  Su and Rob Schuler and Shishir Bharathi and Gaurang Mehta
		  and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/grid2007.pdf},
  Title		= {Data Placement for Scientific Applications in Distributed
		  Environments},
  BookTitle	= {Proceedings of Grid Conference 2007},
  Year		= {2007}
}

Optimizing Workflow Data Footprint. Singh, G.; Vahi, K.; Ramakrishnan, A.; Mehta, G.; Deelman, E.; Zhao, H.; Sakellariou, R.; Blackburn, K.; Brown, D.; Fairhurst, S.; Meyers, D.; and Berriman, G. B. Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling. 2007.

Optimizing Workflow Data Footprint [pdf]

Paper link bibtex

@Article{	  singh2007optimizing,
  Author	= {Gurmeet Singh and Karan Vahi and Arun Ramakrishnan and
		  Gaurang Mehta and Ewa Deelman and Henan Zhao and Rizos
		  Sakellariou and Kent Blackburn and Duncan Brown and Stephen
		  Fairhurst and David Meyers and G. Bruce Berriman},
  URL		= {http://pegasus.isi.edu/publications/Footprint-final.pdf},
  Title		= {Optimizing Workflow Data Footprint},
  Journal	= {Special issue of the Scientific Programming Journal
		  dedicated to Dynamic Computational Workflows: Discovery,
		  Optimisation and Scheduling},
  Year		= {2007}
}

Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example. Mandal, N.; Deelman, E.; Mehta, G.; Su, M.; and Vahi, K. In Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS07), 2007.

Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example [pdf]

Paper link bibtex

@InProceedings{	  mandal2007works,
  Author	= {Nandita Mandal and Ewa Deelman and Gaurang Mehta and
		  Mei-Hui Su and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/kepler-works07.pdf},
  Title		= {Integrating Existing Scientific Workflow Systems: The
		  Kepler/Pegasus Example},
  BookTitle	= {Proceedings of the Second Workshop on Workflows in Support
		  of Large-Scale Science (WORKS07)},
  Year		= {2007}
}

Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources. Ramakrishnan, A.; Singh, G.; Zhao, H.; Deelman, E.; Sakellariou, R.; Vahi, K.; Blackburn, K.; Meyers, D.; and Samidi, M. In Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid), 2007.

Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources [pdf]

Paper link bibtex

@InProceedings{	  ramakrishnan2007data,
  Author	= {Arun Ramakrishnan and Gurmeet Singh and Henan Zhao and Ewa
		  Deelman and Rizos Sakellariou and Karan Vahi and Kent
		  Blackburn and David Meyers and Michael Samidi},
  URL		= {http://pegasus.isi.edu/publications/Ramakrishnan-DataIntensiveWorkflow.pdf},
  Title		= {Scheduling Data-Intensive Workflows onto
		  Storage-Constrained Distributed Resources},
  BookTitle	= {Seventh IEEE International Symposium on Cluster Computing
		  and the Grid (CCGrid)},
  Year		= {2007}
}

2006 (2)

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example. Deelman, E.; Callaghan, S.; Field, E.; Francoeur, H.; Graves, R.; Gupta, N.; Gupta, V.; Jordan, T. H.; Kesselman, C.; Maechling, P.; Mehringer, J.; Mehta, G.; Okaya, D.; Vahi, K.; and Zhao, L. In e-Science 2006, 2006. Best paper award

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example [pdf]

Paper link bibtex

@InProceedings{	  deelman2006cybershake,
  Author	= {Ewa Deelman and Scott Callaghan and Edward Field and
		  Hunter Francoeur and Robert Graves and Nitin Gupta and
		  Vipin Gupta and Thomas H. Jordan and Carl Kesselman and
		  Philip Maechling and John Mehringer and Gaurang Mehta and
		  David Okaya and Karan Vahi and Li Zhao},
  URL		= {http://pegasus.isi.edu/publications/deelman_Ecybershake.pdf},
  Title		= {Managing Large-Scale Workflow Execution from Resource
		  Provisioning to Provenance tracking: The CyberShake
		  Example},
  BookTitle	= {e-Science 2006},
  Year		= {2006},
  Note		= {Best paper award}
}

Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System. Nefedova, V.; Jacob, R.; Foster, I.; Liu, Z.; Liu, Y.; Deelman, E.; Mehta, G.; Su, M.; and Vahi, K. In e-Science 2006, 2006.

Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System [pdf]

Paper link bibtex

@InProceedings{	  nefedova2006climage,
  Author	= {Veronika Nefedova and Robert Jacob and Ian Foster and
		  Zhengyu Liu and Yun Liu and Ewa Deelman and Gaurang Mehta
		  and Mei-Hui Su and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/Foam-submit.pdf},
  Title		= {Automating Climate Science: Large Ensemble Simulations on
		  the TeraGrid with the GriPhyN Virtual Data System},
  BookTitle	= {e-Science 2006},
  Year		= {2006}
}

2005 (4)

Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems. Deelman, E.; Singh, G.; Su, M.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Vahi, K.; Berriman, G. B.; Good, J.; Laity, A.; Jacob, J. C.; and Katz, D. S. Scientific Programming Journal, 13(3): 219-237. 2005.

Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems [pdf]

Paper link bibtex

@Article{	  deelman2005pegasus,
  Author	= {Ewa Deelman and Gurmeet Singh and Mei-Hui Su and James
		  Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta
		  and Karan Vahi and G. Bruce Berriman and John Good and
		  Anastasia Laity and Joseph C. Jacob and Daniel S. Katz},
  URL		= {http://pegasus.isi.edu/publications/Sci.pdf},
  Title		= {Pegasus: a Framework for Mapping Complex Scientific
		  Workflows onto Distributed Systems},
  Journal	= {Scientific Programming Journal},
  Volume	= {13},
  Number	= {3},
  Pages		= {219-237},
  Year		= {2005}
}

Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment. Maechling, P.; Chalupsky, H.; Dougherty, M.; Deelman, E.; Gil, Y.; Gullapalli, S.; Gupta, V.; Kesselman, C.; Kim, J.; Mehta, G.; Mendenhall, B.; Russ, T. A.; Singh, G.; Spraragen, M.; Staples, G.; and Vahi, K. SIGMOD Record, 34(3): 24-30. 2005.

Paper link bibtex

@Article{	  maechling2005sigmod,
  Author	= {Philip Maechling and Hans Chalupsky and Maureen Dougherty
		  and Ewa Deelman and Yolanda Gil and Sridhar Gullapalli and
		  Vipin Gupta and Carl Kesselman and Jihie Kim and Gaurang
		  Mehta and Brian Mendenhall and Thomas A. Russ and Gurmeet
		  Singh and Marc Spraragen and Garrick Staples and Karan
		  Vahi},
  URL		= {http://pegasus.isi.edu/publications/scec.pdf},
  Title		= {Simplifying construction of complex workflows for
		  non-expert users of the Southern California Earthquake
		  Center Community Modeling Environment},
  Journal	= {SIGMOD Record},
  Volume	= {34},
  Number	= {3},
  Pages		= {24-30},
  Year		= {2005}
}

Task Scheduling Strategies for Workflow-based Applications in Grids. Blythe, J.; Jain, S.; Deelman, E.; Gil, Y.; Vahi, K.; Mandal, A.; and Kennedy, K. In CCGrid 2005, 2005.

Task Scheduling Strategies for Workflow-based Applications in Grids [pdf]

Paper link bibtex

@InProceedings{	  blythe2005scheduling,
  Author	= {Jim Blythe and Sonal Jain and Ewa Deelman and Yolanda Gil
		  and Karan Vahi and Anirban Mandal and Ken Kennedy},
  URL		= {http://pegasus.isi.edu/publications/ccgrid05-correction.pdf},
  Title		= {Task Scheduling Strategies for Workflow-based Applications
		  in Grids},
  BookTitle	= {CCGrid 2005},
  Year		= {2005}
}

The Pegasus Portal: Web Based Grid Computing. Singh, G.; Deelman, E.; Mehta, G.; Vahi, K.; Su, M.; Berriman, G. B.; Good, J.; Jacob, J. C.; Katz, D. S.; Lazzarini, A.; Blackburn, K.; and Koranda, S. In The 20th Annual ACM Symposium on Applied Computing, 2005.

The Pegasus Portal: Web Based Grid Computing [pdf]

Paper link bibtex

@InProceedings{	  singh2005portal,
  Author	= {Gurmeet Singh and Ewa Deelman and Gaurang Mehta and Karan
		  Vahi and Mei-Hui Su and G. Bruce Berriman and John Good and
		  Joseph C. Jacob and Daniel S. Katz and Albert Lazzarini and
		  Kent Blackburn and Scott Koranda},
  URL		= {http://pegasus.isi.edu/publications/Pegasus_Portal_final2.pdf},
  Title		= {The Pegasus Portal: Web Based Grid Computing},
  BookTitle	= {The 20th Annual ACM Symposium on Applied Computing},
  Year		= {2005}
}

2004 (1)

Pegasus: Mapping Scientific Workflows onto the Grid. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Patil, S.; Su, M.; Vahi, K.; and Livny, M. In Across Grids Conference, 2004.

Pegasus: Mapping Scientific Workflows onto the Grid [pdf]

Paper link bibtex

@InProceedings{	  deelman2004pegasus,
  Author	= {Ewa Deelman and James Blythe and Yolanda Gil and Carl
		  Kesselman and Gaurang Mehta and Sonal Patil and Mei-Hui Su
		  and Karan Vahi and Miron Livny},
  URL		= {http://pegasus.isi.edu/publications/ewa/Pegasus_final.pdf},
  Title		= {Pegasus: Mapping Scientific Workflows onto the Grid},
  BookTitle	= {Across Grids Conference},
  Year		= {2004}
}

2003 (4)

Pegasus and the Pulsar Search: From Metadata to Execution on the Grid. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Koranda, S.; Lazzarini, A.; Mehta, G.; Papa, M. A.; and Vahi, K. In Applications Grid Workshop, PPAM 2003, 2003.

Paper link bibtex 11 downloads

@InProceedings{	  deelman2003pulsar,
  Author	= {Ewa Deelman and James Blythe and Yolanda Gil and Carl
		  Kesselman and Scott Koranda and Albert Lazzarini and
		  Gaurang Mehta and Maria Alessandra Papa and Karan Vahi},
  URL		= {http://pegasus.isi.edu/publications/ewa/agw_ppam2003.pdf},
  Title		= {Pegasus and the Pulsar Search: From Metadata to Execution
		  on the Grid},
  BookTitle	= {Applications Grid Workshop, PPAM 2003},
  Year		= {2003}
}

Mapping Abstract Complex Workflows onto Grid Environments. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Vahi, K.; Blackburn, K.; Lazzarini, A.; Arbree, A.; Cavanaugh, R.; and Koranda, S. Journal of Grid Computing, 1(1): 25-39. 2003.

Mapping Abstract Complex Workflows onto Grid Environments [pdf]

Paper link bibtex 11 downloads

@Article{	  deelman2003mapping,
  Author	= {Ewa Deelman and James Blythe and Yolanda Gil and Carl
		  Kesselman and Gaurang Mehta and Karan Vahi and Kent
		  Blackburn and Albert Lazzarini and Adam Arbree and Richard
		  Cavanaugh and Scott Koranda},
  URL		= {http://pegasus.isi.edu/publications/ewa/jogc.pdf},
  Title		= {Mapping Abstract Complex Workflows onto Grid
		  Environments},
  Journal	= {Journal of Grid Computing},
  Volume	= {1},
  Number	= {1},
  Pages		= {25-39},
  Year		= {2003}
}

The Role of Planning in Grid Computing. Blythe, J.; Deelman, E.; Gil, Y.; Kesselman, C.; Agarwal, A.; Mehta, G.; and Vahi, K. In ICAPS, 2003.

The Role of Planning in Grid Computing [pdf]

Paper link bibtex 4 downloads

@InProceedings{	  blythe2003planning,
  Author	= {Jim Blythe and Ewa Deelman and Yolanda Gil and Carl
		  Kesselman and Amit Agarwal and Gaurang Mehta and Karan
		  Vahi},
  URL		= {http://pegasus.isi.edu/publications/ewa/icaps03.pdf},
  Title		= {The Role of Planning in Grid Computing},
  BookTitle	= {ICAPS},
  Year		= {2003}
}

From Metadata to Execution on the Grid Pegasus and the Pulsar Search. Deelman, E.; Blythe, J.; Gil, Y.; Kesselman, C.; Mehta, G.; Vahi, K.; Koranda, S.; Lazzarini, A.; and Papa, M. A. Technical Report Technical Report 2003-15, GriPhyN, 2003.

Paper link bibtex 11 downloads

@TechReport{	  deelman2003metadata,
  Author	= {Ewa Deelman and James Blythe and Yolanda Gil and Carl
		  Kesselman and Gaurang Mehta and Karan Vahi and Scott
		  Koranda and Albert Lazzarini and Maria Alessandra Papa},
  URL		= {http://pegasus.isi.edu/publications/ewa/griphyn_2003_15.pdf},
  Title		= {From Metadata to Execution on the Grid Pegasus and the
		  Pulsar Search},
  Institution	= {GriPhyN},
  Number	= {Technical Report 2003-15},
  Year		= {2003}
}