Selected Publications

This form enables you to search through publications from CS&T researchers.

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2020

Logic Obfuscation: Modeling Attack ResiliencyV. Menon, G. Kolhe, J. Fifty, A. G. Schmidt, J. Monson, M. C. French, Y. Hu, P. Beerel, P. Nuzzo
In to Appar in Government Microcircuit Applications & Critical Technology Conference (GOMACTech)
2020BibTex

2019

An Intelligent Interface for Integrating Climate, Hydrology, Agriculture, and Socioeconomic ModelsD. Garijo, D. Khider, V. Ratnakar, Y. Gil, E. Deelman, R. F. da Silva, C. Knoblock, Y. - Y. Chiang, M. Pham, J. Pujara, B. Vu, D. Feldman, R. Mayani, K. Cobourn, C. Duffy, A. Kemanian, L. Shu, V. Kumar, A. Khandelwal, K. Tayal, S. Peckham, M. Stoica, A. Dabrowski, D. Hardesty-Lewis, S. Pierce
In ACM 24th International Conference on Intelligent User Interfaces (IUI'19)
2019, 111–112 pagesBibTex

Using Simple PID-inspired Controllers for Online Resilient Resource Management of Distributed Scientific WorkflowsR. F. da Silva, R. Filgueira, E. Deelman, E. Pairo-Castineira, I. M. Overton, M. Atkinson
In Future Generation Computer Systems
2019, 615-628 pagesBibTex

Collaborative Circuit Designs using the CRAFT RepositoryA. Brinckman, E. Deelman, S. Gupta, J. Nabrzyski, S. Park, R. F. da Silva, I. J. Taylor, K. Vahi
In Future Generation Computer Systems
2019, 841–853 pagesBibTex

Computational requirements for real-time ptychographic image reconstructionK. Datta, A. Rittenbach, D. - I. Kang, J. P. Walters, S. P. Crago, J. Damoulakis
In Applied Optics
2019, B19–B27 pagesBibTex

Measuring the Impact of Burst Buffers on Data-Intensive Scientific WorkflowsR. F. da Silva, S. Callaghan, T. M. A. Do, G. Papadimitriou, E. Deelman
In Future Generation Computer Systems
2019, 208–220 pagesBibTex

The role of machine learning in scientific workflowsE. Deelman, A. Mandal, M. Jiang, R. Sakellariou
In The International Journal of High Performance Computing Applications
2019BibTex

The Evolution of the Pegasus Workflow Management SoftwareE. Deelman, K. Vahi, M. Rynge, R. Mayani, R. F. da Silva, G. Papadimitriou, M. Livny
In Computing in Science Engineering
2019BibTex

A Secure Gateway for Enabling ASIC Design CollaborationsS. Bogol, P. Brenner, A. Brinckman, E. Deelman, R. F. da Silva, S. Gupta, J. Nabrzyski, S. Park, D. Perez, M. Rynge, I. Taylor, K. Vahi, M. V. Werf, R. Sarah, S. Wyngaard
In 11th International Workshop on Science Gateways (IWSG 2019)
2019BibTex

Accurately Simulating Energy Consumption of I/O-intensive Scientific WorkflowsR. F. da Silva, A. - C. Orgerie, H. Casanova, R. Tanaka, E. Deelman, F. Suter
In Computational Science – ICCS 2019
2019, 138–152 pagesBibTex

MCEM: Multi-Level Cooperative Exception Model for HPC WorkflowsS. Herbein, D. Domyancic, P. Minner, I. Laguna, R. F. da Silva, D. H. Ahn
In 9th International Workshop on Runtime and Operating Systems for Supercomputers (ROSS 2019)
2019BibTex

Security-driven Metrics and Models for Efficient Evaluation of Logic Encryption SchemesY. Hu, V. V. Menon, A. Schmidt, J. Monson, M. C. French, P. Nuzzo
In Proceedings of the 17th ACM-IEEE International Conference on Formal Methods and Models for System Design
2019, 9:1–9:5 pagesBibTex

System-Level Framework for Logic Obfuscation with Quantified Metrics for EvaluationV. V. Menon, G. Kolhe, A. Schmidt, J. Monson, M. C. French, Y. Hu, P. A. Beerel, P. Nuzzo
In IEEE Cybersecurity Development (SecDev)
2019, 89-100 pagesBibTex

Constellations in the Cloud: Virtualizing Remote Sensing SystemsA. G. Schmidt, V. Venugopalan, M. Paolieri, M. French
In IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium
2019, 5351-5354 pagesBibTex

Quantifying Security and Overheads for Obfuscation of Integrated CircuitsV. Venugopalan, G. Kolhe, A. Schmidt, J. Monson, M. C. French, Y. Hu, P. A. Beerel, P. Nuzzo
In Government Microcircuit Applications & Critical Techology Conference (GOMACTech)
2019BibTex

Thin Wing EMA-System on Chip with Synchronized TRust and Assurance (SaSTRA)P. Kshirsagar, V. Venugopalan
In Government Microcircuit Applications & Critical Techology Conference (GOMACTech)
2019BibTex

Constellations in the cloud: Virtualizing remote sensing systemsA. G. Schmidt, V. Venugopalan, M. Paolieri, M. C. French
In IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
2019BibTex

Impact of Off-Chip Memories on HLS-Generated CircuitsA. D.R., R. Sass, A. G. Schmidt
In International Workshop on FPGAs for Software Programmers (FSP)
2019BibTex

Design Considerations for Mapping FPGA High-Level Synthesis Algorithms to Next-Generation Memory DevicesA. D.R., R. Sass, A. G. Schmidt
In International Symposium on Memory Systems (MEMSYS)
2019BibTex

Volcan: System Integration of HLS and HMC with FPGAsA. D.R., R. Sass, A. G. Schmidt
In International Conference on ReConFigurable Computing and FPGAs
2019BibTex

Security-driven Metrics and Models for Efficient Evaluation of Logic Encryption SchemesY. Hu, V. V. Menon, A. G. Schmidt, J. Monson, M. French, P. Nuzzo
In ACM-IEEE International Conference on Formal Methods and Models for System Design (MEMOCODE)
2019BibTex

System-Level Framework for Logic Obfuscation with Quantified Metrics for EvaluationV. V. Menon, G. Kolhe, A. Schmidt, J. Monson, M. French, Y. Hu, P. A. Beerel, P. Nuzzo
In In IEEE Cybersecurity Development (SecDev)
2019BibTex

Quantifying Security and Overheads for Obfuscation of Integrated CircuitsV. Venugopalan, G. Kolhe, A. Schmidt, J. Monson, M. French, Y. Hu, P. A. Beerel, P. Nuzzo
In In Government Microcircuit Applications & Critical Technology Conference (GOMACTech)
2019BibTex

Enhanced Independent Functional Testing of Xilinx FPGAsT. Haroldsen, M. French, A. Schmidt, D. Khamar
In Government Microcircuit Applications & Critical Technology Conference (GOMACTech)
2019BibTex

2018

Collaborative Circuit Designs using the CRAFT RepositoryA. Brinckman, E. Deelman, S. Gupta, J. Nabrzyski, S. Park, R. F. da Silva, Taylor, K. Vahi
In Future Generation Computer Systems
2018BibTex

A Job Sizing Strategy for High-Throughput Scientific WorkflowsB. Tovar, R. F. da Silva, G. Juve, E. Deelman, W. Allcock, D. Thain, M. Livny
In IEEE Transactions on Parallel and Distributed Systems
2018, 240–253 pagesBibTex

Improved Metrics for Obfuscated ICsF. M. Zhu, P. Beerel
In Government Microcircuit Applications and Critical Technology Conference
2018BibTex

Hot & Spicy: Improving Productivity with Python and HLS for FPGAsM. J. S. A. G. Skalicky, M. C. French
In IEEE International Symposium on Field Customizeable Computing Machines
2018BibTex

Surveying the Hardware Trojan Threat Landscape for the Internet-of-ThingsV. Venugopalan, C. D. Patterson
In Journal of Hardware and Systems Security
2018BibTex

CyberShake Models of Seismic Hazards in Southern and Central CaliforniaT. H. Jordan, S. Callaghan, R. W. Graves, F. Wang, K. R. Milner, C. A. Goulet, P. J. Maechling, K. B. Olsen, Y. Cui, G. Juve, K. Vahi, J. Yu, E. Deelman, D. Gill
In Seismological Research Letters
2018, 875–876 pagesBibTex

CyberShake Models of Seismic Hazards in Southern and Central CaliforniaT. H. Jordan, S. Callaghan, R. W. Graves, F. Wang, K. R. Milner, C. A. Goulet, P. J. Maechling, K. B. Olsen, Y. Cui, G. Juve, K. Vahi, J. Yu, E. Deelman, D. Gill
In 11th National Conference in Earthquake Engineering
2018BibTex

WRENCH: Workflow Management System Simulation WorkbenchH. Casanova, S. Pandey, J. Oeth, R. Tanaka, F. Suter, R. F. da Silva
In 13th Workshop on Workflows in Support of Large-Scale Science (WORKS'18)
2018BibTex

Event-Based Triggering and Management of Scientific Workflow EnsemblesS. Pandey, K. Vahi, R. F. da Silva, E. Deelman, M. Jian, C. Harrison, A. Chu, H. Casanova
2018BibTex

Searching the Sequence Read Archive Using Jetstream and WranglerK. Levi, M. Rynge, E. Abeysinghe, R. A. Edwards
In Proceedings of the Practice and Experience on Advanced Research Computing
2018, 50:1–50:7 pagesBibTex

Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations Through OSG InfrastructureS. Thapa, R. W. Gardner, K. Herner, D. Hufnagel, D. Lesny, M. Rynge
In Proceedings of the Practice and Experience on Advanced Research Computing
2018, 15:1–15:7 pagesBibTex

IoT-Hub: New IoT data-platform for Virtual Research EnvironmentsR. Filgueira, R. F. da Silva, E. Deelman, V. Christodoulou, A. Krause
In 10th International Workshop on Science Gateways (IWSG 2018)
2018BibTex

Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model ExecutionR. F. da Silva, D. Garijo, S. Peckham, Y. Gil, E. Deelman, V. Ratnakar
In 9th International Congress on Environmental Modelling and Software
2018BibTex

MINT: Model Integration Through Knowledge-Powered Data and Process CompositionY. Gil, K. Cobourn, E. Deelman, C. Duffy, R. F. da Silva, A. Kemanian, C. Knoblock, V. Kumar, S. Peckham, L. Carvalho, Y. - Y. Chiang, D. Garijo, D. Khider, A. Khandelwal, M. Pahm, J. Pujara, V. Ratnakar, M. Stoica, B. Vu
In 9th International Congress on Environmental Modelling and Software
2018BibTex

The future of scientific workflowsE. Deelman, T. Peterka, I. Altintas, C. D. Carothers, K. K. van Dam, K. Moreland, M. Parashar, L. Ramakrishnan, M. Taufer, J. Vetter
In The International Journal of High Performance Computing Applications
2018, 159–175 pagesBibTex

How Quantum is the Speedup in Adiabatic Unstructured Search?I. {Hen}
In arXiv e-prints
2018, arXiv:1811.08302 pagesBibTex

Resolution of the Sign Problem for a Frustrated Triplet of SpinsI. {Hen}
In arXiv e-prints
2018, arXiv:1811.03027 pagesBibTex

The power of pausing: advancing understanding of thermalization in experimental quantum annealersJ. {Marshall}, D. {Venturelli}, I. {Hen}, E. G. {Rieffel}
In arXiv e-prints
2018, arXiv:1810.05881 pagesBibTex

Estimating the Density of States of Frustrated Spin SystemsL. {Barash}, J. {Marshall}, M. {Weigel}, I. {Hen}
In arXiv e-prints
2018, arXiv:1808.04340 pagesBibTex

Quantum annealing of the $p$-spin model under inhomogeneous transverse field drivingY. Susa, Y. Yamashiro, M. Yamamoto, I. Hen, D. A. Lidar, H. Nishimori
In Phys. Rev. A
2018, 042326 pagesBibTex

Analog Errors in Ising MachinesT. {Albash}, V. {Martin-Mayor}, I. {Hen}
In arXiv e-prints
2018, arXiv:1806.03744 pagesBibTex

On the Computational Complexity of Curing the Sign ProblemM. {Marvian}, D. A. {Lidar}, I. {Hen}
In arXiv e-prints
2018, arXiv:1802.03408 pagesBibTex

Solving Quantum Spin Glasses with Off-Diagonal Expansion Quantum Monte CarloI. Hen, T. Albash
In Journal of Physics: Conference Series
2018, 012007 pagesBibTex

Off-diagonal series expansion for quantum partition functionsI. Hen
In Journal of Statistical Mechanics: Theory and Experiment
2018, 053102 pagesBibTex

Graphic Encoding of Macromolecules for Efficient High-Throughput AnalysisT. Estrada, J. Benson, H. Carrillo-Cabada, A. Razavi, M. Cuendet, H. Weinstein, E. Deelman, M. Taufer
In 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
2018, 315-324 pagesBibTex

Combating Workflow Failures with Integrity-based Checkpoints and BlockchainO. Bhide, R. Hill, K. Vahi, M. Rynge, V. Velch
In 6th International Workshop on Distributed Storage and Blockchain Technologies for Big Data
2018BibTex

Workflows using Pegasus: Enabling Dark Energy Survey PipelinesK. Vahi, M. H. Wang, C. Chang, S. Dodelson, M. Rynge, E. Deelman
In 28th annual international Astronomical Data Analysis Software & Systems (ADASS)
2018BibTex

Enabling Data Analytics Workflows using Node-Local StorageT. M. A. Do, M. Jiang, B. Gallagher, A. Chu, C. Harrison, K. Vahi, E. Deelman
In The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC18), Poster
2018BibTex

WRENCH: A Framework for Simulating Workflow Management SystemsH. Casanova, S. Pandey, J. Oeth, R. Tanaka, F. Suter, R. F. da Silva
In 13th Workshop on Workflows in Support of Large-Scale Science (WORKS'18)
2018, 74–85 pagesBibTex

Reducing Tail Latencies While Improving Resiliency to Timing Errors for Stream Processing WorkloadsG. P. Tran, J. P. Walters, S. Crago
In 2018 IEEE/ACM 11th International Conference on Utility and Cloud Computing (UCC)
2018, 194–203 pagesBibTex

Pacer: Automated Feedback-Based Vertical Elasticity for Heterogeneous Soft Real-Time WorkloadsY. - A. Chen, G. Tran, A. Rittenbach, J. Walters, S. Crago
In 2018 IEEE/ACM 11th International Conference on Utility and Cloud Computing (UCC)
2018, 73–82 pagesBibTex

Reducing Tail Latencies While Improving Resiliency to Timing Errors for Stream Processing WorkloadsG. P. C. Tran, J. P. Walters, S. P. Crago
In 2018 IEEE International Conference on Services Computing (SCC)
2018BibTex

Hot & Spicy: Improving Productivity with Python and HLS for FPGAsS. Skalicky, J. Monson, A. G. Schmidt, M. C. French
In IEEE International Symposium on Field Customizeable Computing Machines
2018BibTex

Bridging the Gap between Advanced Memory and Heterogeneous ArchitecturesA. D. Rajagopala, R. Sass, A. G. Schmidt, M. C. French
In 2018 IEEE 26th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM)
2018, 226-226 pagesBibTex

SpaceCubeX2: Heterogeneous On-board Processing for Distributed Measurement and Multi-Satellite MissionsM. C. French, A. G. Schmidt, S. Skalicky, T. Flately, G. Crum, A. Geist, V. Chirayath, A. Li
In NASA Earth Science Technology Forum (ESTF)
2018BibTex

Independent Functional Testing of Commercial FPGA DevicesT. Haroldsen, M. French, A. G. Schmidt
In Verification Sciences and Engineering Workshop
2018BibTex

A Study of Complex Deep Learning Networks on High-Performance, Neuromorphic, and Quantum ComputersT. E. Potok, C. Schuman, S. Young, R. Patton, F. Spedalieri, J. Liu, K. - T. Yao, G. Rose, G. Chakma
In ACM Journal on Emerging Technologies in Computing Systems
2018BibTex

Adiabatic Quantum Computation Applied to Deep Learning NetworksJ. Liu, F. Spedalieri, K. - T. Yao, T. Potok, C. Schuman, S. Young, R. Patton, G. Rose, G. Chamka
In Entropy
2018BibTex

2017

OSG-KINC: High-throughput gene co-expression network construction using the open science gridW. L. Poehlman, M. Rynge, D. Balamurugan, N. Mills, F. A. Feltus
In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2017, 1827-1831 pagesBibTex

The OSG Open Facility: an on-ramp for opportunistic scientific computingB. Jayatilaka, T. Levshina, C. Sehgal, R. Gardner, M. Rynge, F. Wurthwein
In Journal of Physics: Conference Series
2017, 082048 pagesBibTex

A Comparison of System Performance on a Private OpenStack Cloud and Amazon EC2M. Kang, D. - I. Kang, J. P. Walters, S. P. Crago
In 10th IEEE International Conference on Cloud Computing (IEEE Cloud)
2017BibTex

Software architectures to integrate workflow engines in science gatewaysT. Glatard, M. - E. Rousseau, S. Camarasu-Pop, R. Adalat, N. Beck, S. Das, R. F. da Silva, N. Khalili-Mahani, V. Korkhov, P. - O. Quirion, P. Rioux, S. D. Olabarriaga, P. Bellec, A. C. Evans
In Future Generation Computer Systems
2017BibTex

A Characterization of Workflow Management Systems for Extreme-Scale ApplicationsR. F. da Silva, R. Filgueira, I. Pietri, M. Jiang, R. Sakellariou, E. Deelman
In Future Generation Computer Systems
2017BibTex

PANORAMA: An Approach to Performance Modeling and Diagnosis of Extreme Scale WorkflowsE. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, R. F. da Silva
In International Journal of High Performance Computing Applications
2017, 4–18 pagesBibTex

Upper Limits on Gravitational Waves from Scorpius X-1 from a Model-Based Cross-Correlation Search in Advanced LIGO DataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1706.03119
2017BibTex

Towards Continuous Scientific Data Analysis and Hypothesis EvolutionY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, A. Srivastava, P. Mallick
2017BibTex

Dynamically Improving Resiliency to Timing Errors for Stream Processing WorkloadsG. P. C. Tran, J. P. Walters, S. P. Crago
In The 18th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT’17)
2017BibTex

Load Balancing for Minimizing Deadline Misses and Total Runtime for Connected Car System in Fog ComputingY. - A. Chen, J. P. Walters, S. P. Crago
In 15th International Symposium on Parallel and Distributed Processing with Applications (ISPA 2017)
2017BibTex

Reproducibility of Execution Environments in Computational Science Using Semantics and CloudsI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In Future Generation Computer Systems
2017, 354–367 pagesBibTex

SpaceCubeX: A Framework for Evaluating Hybrid Multi-Core CPU FPGA DSP ArchitecturesA. G. Schmidt, G. Weisz, M. C. French, T. Flatley, C. Y. Villalpando
In IEEE Aerospace Conference
2017BibTex

GW170104: Observation of a 50-Solar-Mass Binary Black Hole Coalescence at Redshift 0.2B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1706.01812
2017BibTex

All-sky Search for Periodic Gravitational Waves in the O1 LIGO DataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1707.02667
2017BibTex

First low-frequency Einstein@ Home all-sky search for continuous gravitational waves in Advanced LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1707.02669
2017BibTex

Search for gravitational waves from Scorpius X-1 in the first Advanced LIGO observing run with a hidden Markov modelB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1704.03719
2017BibTex

Search for intermediate mass black hole binaries in the first observing run of Advanced LIGOB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1704.04628
2017BibTex

Accelerating Circuit Realization via a Collaborative Gateway of InnovationsI. J. Taylor, A. Brinckman, E. Deelman, R. F. da Silva, S. Gupta, J. Nabrzyski, S. Park, K. Vahi
In 9th International Workshop on Science Gateways (IWSG 2017)
2017BibTex

Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined ExchangesA. Mandal, P. Ruth, I. Baldin, R. F. da Silva, E. Deelman
In First International Workshop on Workflow Science (WoWS 2017)
2017BibTex

Distributed Workflows for Modeling Experimental DataV. Lynch, J. B. Calvo, E. Deelman, R. F. da Silva, M. Goswami, Y. Hui, E. Lingerfelt, J. Vetter
In 2017 IEEE High Performance Extreme Computing Conference (HPEC'17)
2017BibTex

Reproducibility of execution environments in computational science using Semantics and CloudsI. S. Pérez, R. F. da Silva, M. Rynge, E. Deelman, M. {\'ı}a P. S. -, Ó. Corcho
In Future Generation Comp. Syst.
2017, 354–367 pagesBibTex

On the Use of Burst Buffers for Accelerating Data-Intensive Scientific WorkflowsR. F. da Silva, S. Callaghan, E. Deelman
In 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17)
2017BibTex

rvGAHP - Push-based Job Submission using Reverse SSH ConnectionsS. Callaghan, G. Juve, K. Vahi, P. J. Maechling, T. H. Jordan, E. Deelman
In 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17)
2017BibTex

All-sky search for periodic gravitational waves in the O1 LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In Physical Review D
2017, 062002 pagesBibTex

GW170104: observation of a 50-solar-mass binary black hole coalescence at redshift 0.2L. I. G. O. Scientific, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, others
In Physical Review Letters
2017, 221101 pagesBibTex

Upper limits on gravitational waves from Scorpius X-1 from a model-based cross-correlation search in Advanced LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In The Astrophysical Journal
2017, 47 pagesBibTex

Advantages of Unfair Quantum Ground-State SamplingB. H. Zhang, G. Wagenbreth, V. Martin-Mayor, I. Hen
In Scientific Reports
2017, 1044 pagesBibTex

Realizable quantum adiabatic searchI. Hen
In EPL (Europhysics Letters)
2017, 30003 pagesBibTex

Solving spin glasses with optimized trees of clustered spinsI. Hen
In Phys. Rev. E
2017, 022105 pagesBibTex

Temperature Scaling Law for Quantum Annealing OptimizersT. Albash, V. Martin-Mayor, I. Hen
In Phys. Rev. Lett.
2017, 110502 pagesBibTex

Thermalization, Freeze-out, and Noise: Deciphering Experimental Quantum AnnealersJ. Marshall, E. G. Rieffel, I. Hen
In Phys. Rev. Applied
2017, 064025 pagesBibTex

Off-diagonal expansion quantum Monte CarloT. Albash, G. Wagenbreth, I. Hen
In Phys. Rev. E
2017, 063309 pagesBibTex

Initial Approaches for Discovery of Undocumented Functionality in FPGAsS. A. G. French, A. Dasu
In Government Microcircuit Applications and Critical Technology Conference
2017BibTex

Evaluating Rapid Application Development with Python for Heterogeneous Processor-based FPGAsA. G. Schmidt, G. Weisz, M. C. French
In IEEE International Symposium on Field Customizeable Computing Machines
2017BibTex

Radiation Hardening by Software Techniques on FPGAs: Flight Experiment Evaluation and ResultsM. Schmidt, T. Flatley
In IEEE Aerospace Conference
2017BibTex

Architectural Refinements for Enhancing Trust and Securing Cyber-Physical SystemsV. Venugopalan, C. D. Patterson
In IEEE International Conference on Advanced and Trusted Computing (ATC)
2017BibTex

Developer Spotlight: Applying Deep Learning to Aerospace Technologies and Integrated SystemsV. Venugopalan
2017BibTex

Towards Continuous Scientific Data Analysis and Hypothesis EvolutionY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, A. Srivastava, P. Mallick
In Thirty-First AAAI Conference on Artificial Intelligence
2017, 4406–4414 pagesBibTex

SpaceCubeX: A Framework for Evaluating Hybrid Multi-Core CPU FPGA DSP ArchitecturesA. G. Schmidt, G. Weisz, M. French, T. Flatley, C. Y. Villalpando
In IEEE Aerospace Conference
2017BibTex

Initial Approaches for Discovery of Undocumented Functionality in FPGAsS. A. G. French, A. Dasu
In Government Microcircuit Applications and Critical Technology Conference
2017BibTex

Evaluating Rapid Application Development with Python for Heterogeneous Processor-based FPGAsA. G. Schmidt, G. Weisz, M. French
In IEEE International Symposium on Field Customizeable Computing Machines
2017BibTex

Radiation Hardening by Software Techniques on FPGAs: Flight Experiment Evaluation and ResultsM. Schmidt, T. Flatley
In IEEE Aerospace Conference
2017BibTex

2016

Toward an End-to-End Framework for Modeling, Monitoring and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Król, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. S. Meredith, J. S. Vetter, V. E. Lynch, B. Mayer, J. Wynne, M. P. Blanco, C. D. Carothers, J. M. LaPre, B. Tierney
In 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2016, Chicago, IL, USA, May 23-27, 2016
2016, 1370–1379 pagesBibTex

Consecutive Job Submission Behavior at Mira SupercomputerS. Schlagkamp, R. F. da Silva, W. Allcock, E. Deelman, U. Schwiegelshohn
In 25th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)
2016BibTex

Understanding User Behavior: from HPC to HTCS. Schlagkamp, R. F. da Silva, E. Deelman, U. Schwiegelshohn
In International Conference on Computational Science (ICCS)
2016BibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Performance Analysis of an I/O-Intensive Workflow executing on Google Cloud and Amazon Web ServicesH. Nawaz, G. Juve, R. F. da Silva, E. Deelman
In 18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM)
2016BibTex

Dynamic and Fault-Tolerant Clustering for Scientific WorkflowsW. Chen, R. F. da Silva, E. Deelman, T. Fahringer
In IEEE Transactions on Cloud Computing
2016, 49–62 pagesBibTex

Automated Demand-Based Vertical Elasticity for Heterogeneous Real-Time WorkloadsG. P. Tran, Y. - A. Chen, D. - I. Kang, J. P. Walters, S. P. Crago
In International Conference on Cloud Computing
2016BibTex

Hypervisor Performance Analysis for Real-Time WorkloadsG. P. Tran, Y. - A. Chen, D. - I. Kang, S. P. Crago
In Twentieth Annual IEEE High Performance Extreme Computing Conference
2016BibTex

The Maestro Flight Experiment: A 49-core radiation hardened processor in spaceC. M. Rogers, D. Barnhart, S. Crago
In 2016 IEEE Aerospace Conference
2016BibTex

Toward an End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Krol, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. Meredith, J. Vetter, V. Lynch, B. Mayer, J. Wynne III, M. Blanco, C. Carothers, J. LaPre, B. Tierney
In Workshop on Large-Scale Parallel Processing (LSPP 2016)
2016, 1370–1379 pagesBibTex

Automated Hypothesis Testing with Large Scientific Data RepositoriesY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, P. Mallick
In Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS)
2016BibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Increasing Waiting Time Satisfaction in Parallel Job Scheduling via a Flexible MILP ApproachS. Schlagkamp, M. Hofmann, L. Eufinger, R. F. da Silva
In 14th International Conference on High Performance Computing & Simulation
2016BibTex

Analyzing Users in Parallel Computing: A User-Oriented StudyS. Schlagkamp, R. F. da Silva, J. Renker, G. Rinkenauer
In 14th International Conference on High Performance Computing & Simulation
2016BibTex

Anomaly Detection for Scientific Workflow Applications on Networked CloudsP. Gaikwad, A. Mandal, P. Ruth, G. Juve, D. Krol, E. Deelman
In IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016)
2016BibTex

Science Automation in Practice: Performance Data Farming in WorkflowsD. Krol, J. Kitowski, R. F. da Silva, G. Juve, K. Vahi, M. Rynge, E. Deelman
In 21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA)
2016BibTex

Toward and End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Krol, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. Meredith, J. Vetter, V. Lynch, B. Mayer, J. Wynne III, M. Blanco, C. Carothers, J. LaPre, B. Tierney
In Workshop on Large-Scale Parallel Processing (LSPP 2016)
2016, 1370–1379 pagesBibTex

Workflow Performance Profiles: Development and AnalysisD. Krol, R. F. da Silva, E. Deelman, V. E. Lynch
In Euro-Par 2016: Parallel Processing Workshops
2016BibTex

Automating Environmental Computing Applications with Scientific WorkflowsR. F. da Silva, E. Deelman, R. Filgueira, K. Vahi, M. Rynge, R. Mayani, B. Mayer
In Environmental Computing Workshop (ECW'16)
2016BibTex

OSG-GEM: Gene Expression Matrix Construction Using the Open Science GridW. L. Poehlman, M. Rynge, C. Branton, D. Balamurugan, F. A. Feltus
In Bioinformatics and Biology Insights
2016, 133–141 pagesBibTex

Scaling GIS Analysis Tasks from the Desktop to the Cloud Utilizing Contemporary Distributed Computing and Data Management Approaches: A Case Study of Project-based Learning and Cyberinfrastructure ConceptsT. L. Swetnam, J. D. Pelletier, C. Rasmussen, N. R. Callahan, N. Merchant, E. Lyons, M. Rynge, Y. Liu, V. Nandigam, C. Crosby
In XSEDE16 Conference on Diversity, Big Data, and Science at Scale
2016, 21:1–21:6 pagesBibTex

Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific WorkflowsR. F. da Silva, R. Filgueira, E. Deelman, E. Pairo-Castineira, I. M. Overton, M. Atkinson
In 11th Workflows in Support of Large-Scale Science (WORKS'16)
2016BibTex

Asterism: Pegasus and dispel4py hybrid workflows for data-intensive scienceR. Filgueira, R. F. da Silva, A. Krause, E. Deelman, M. Atkinson
In 7th International Workshop on Data-Intensive Computing in the Clouds (DataCloud'16)
2016BibTex

Enhancing reproducibility for computational methodsV. Stodden, M. McNutt, D. H. Balley, E. Deelman, Y. Gil, B. Hanson, M. A. Heroux, J. P. A. Ioannidis, Taufer
In Science
2016, 1240–1241 pagesBibTex

PGen: large-scale genomic variations analysis workflow and browser in SoyKBY. Liu, S. M. Khan, J. Wang, M. Rynge, Y. Zhang, S. Zeng, S. Chen, J. V. Maldonado dos Santos, B. Valliyodan, P. P. Calyam, N. Merchant, H. T. Nguyen, D. Xu, T. Joshi
In BMC Bioinformatics
2016, 337 pagesBibTex

Automating environmental computing applications with scientific workflowsR. F. da Silva, E. Deelman, R. Filgueira, K. Vahi, M. Rynge, R. Mayani, B. Mayer
In 12th IEEE International Conference on e-Science, e-Science 2016, Baltimore, MD, USA, October 23-27, 2016
2016, 400–406 pagesBibTex

Reducing Data Movement with Approximate Computing TechniquesS. Crago, D. Yeung
In IEEE Conference on Rebooting Computing
2016BibTex

Quantum Annealing for Constrained OptimizationI. Hen, F. M. Spedalieri
In Phys. Rev. Applied
2016, 034007 pagesBibTex

Accelerating Soft-Error-Rate (SER) Estimation in the Presence of Single Event TransientsJ. Li, J. Draper
In Design Automation Conference (DAC)
2016BibTex

Joint Soft-Error-Rate (SER) Estimation for Combinational Logic and Sequential ElementsJ. Li, J. Draper
In International Symposium on VLSI (ISVLSI)
2016BibTex

A New Metric to Measure Cache Utilization for HPC WorkloadsA. Deshpande, J. T. Draper
In International Symposium on Memory Systems (MEMSYS)
2016BibTex

Network-Optimized Distributed Memory Parallel Breadth-First SearchP. Sharma, J. Draper
In ACM/IEEE Supercomputing Conference (SC)
2016BibTex

Practical engineering of hard spin-glass instancesJ. Marshall, V. Martin-Mayor, I. Hen
In Phys. Rev. A
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Driver Hamiltonians for constrained optimization in quantum annealingI. Hen, M. S. Sarandy
In Phys. Rev. A
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Quantum Annealing for Constrained OptimizationI. Hen, F. M. Spedalieri
In Phys. Rev. Applied
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Energetic Cost of Superadiabatic Quantum ComputationI. B. Coulamy, A. C. Santos, I. Hen, M. S. Sarandy
In Frontiers in ICT
2016, 19 pagesBibTex

What goes on behind closed doors?: How college dormitory residents change to save energy during a competition-based energy reduction interventionN. Sintov, E. Dux, A. Tran, M. Orosz
In International Journal of Sustainability in Higher Education
2016, 451-470 pagesBibTex

A window into occupant-driven energy outcomes: Leveraging sub-metering infrastructure to examine psychosocial factors driving long-term outcomes of short-term competition-based energy interventionsK. Konis, M. Orosz, N. Sintov
In Energy and Buildings
2016, 206 - 217 pagesBibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Science automation in practice: Performance data farming in workflowsD. Król, J. Kitowski, R. F. da Silva, G. Juve, K. Vahi, M. Rynge, E. Deelman
In 21st IEEE International Conference on Emerging Technologies and Factory Automation, ETFA 2016, Berlin, Germany, September 6-9, 2016
2016, 1–4 pagesBibTex

PGen: large-scale genomic variations analysis workflow and browser in SoyKBY. Liu, S. M. Khan, J. Wang, M. Rynge, Y. Zhang, S. Zeng, S. Chen, J. M. V. dos Santos, B. Valliyodan, P. Calyam, N. Merchant, H. T. Nguyen, D. Xu, T. Joshi
In BMC Bioinformatics
2016, 337 pagesBibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Detecting and Thwarting Hardware Trojan Attacks in Cyber-Physical SystemsV. Venugopalan, C. D. Patterson, D. M. Shila
In 2016 IEEE Conference on Communications and Network Security (CNS): International Workshop on Cyber-Physical Systems Security (CPS-Sec)
2016, 421-425 pagesBibTex

Anomaly Detection and Fault Disambiguation in Large Flight Data: A Multi-Modal Deep Autoencoder ApproachK. Reddy, S. Sarkar, V. Venugopalan, M. Giering
In Annual Conference of the Prognostics and Health Management Society
2016, 207-214 pagesBibTex

Applying Deep Learning for Prognostic Health Monitoring of Aerospace and Building SystemsK. Reddy, V. Venugopalan, M. Giering
In 1st ACM SIGKDD Workshop on Machine Learning for Prognostics and Health Management (ML for PHM 2016)
2016BibTex

Anomaly Detection and Fault Classification in Large Flight Data Using Multi-Modal Deep Learning ApproachesK. Reddy, S. Sarkar, V. Venugopalan, M. Giering
In 1st International Conference on InfoSymbiotics /Dynamic Data Driven Applications Systems (DDDAS)
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Deep Learning for Automated Occlusion Edge Detection in RGB-D FramesS. Sarkar, V. Venugopalan, K. Reddy, J. Ryde, N. Jaitly, M. Giering
In Journal of Signal Processing Systems
2016, 1–13 pagesBibTex

GPU Acceleration of Computational Electromagnetics MethodsV. Venugopalan, C. Tokgoz
In NVIDIA GPU Technology Conference
2016BibTex

Applying Deep Learning to Aerospace and Building System Applications at UTCV. Venugopalan, K. Reddy, M. Giering
In NVIDIA GPU Technology Conference
2016BibTex

2015

Pegasus, a workflow management system for science automationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. R. Wenger
In Future Generation Comp. Syst.
2015, 17–35 pagesBibTex

Heterogeneous Cloud Computing: The Way ForwardS. P. Crago, J. P. Walters
In Computer
2015, 59-61 pagesBibTex

Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirectA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In International Conference on Virtual Execution Environments (VEE)
2015BibTex

A Unified Hardware/Software MPSoC System Construction and Run-Time FrameworkS. Skalicky, A. G. Schmidt, S. Lopez, M. C. French
In Conference on Design, Automation and Test in Europe (DATE)
2015BibTex

A Parallelizing Matlab Compiler Framework and Run time for Heterogeneous SystemsS. Skalicky, S. Lopez, M. Lukowiak, A. G. Schmidt
In IEEE International Conference on High Performance Computing and Communications
2015BibTex

Building a Chemical-Protein Interactome on the Open Science GridR. Quick, S. Hayashi, S. Meroueh, M. Rynge, S. Teige, B. Wang, D. Xu
In Proceedings of Science, International Symposium on Grids and Clouds (ISGC) 2015
2015BibTex

Storage-aware Algorithms for Scheduling of Workflow Ensembles in CloudsP. Bryk, M. Malawski, G. Juve, E. Deelman
In Journal of Grid Computing
2015BibTex

Adapting Scientific Workflows on Networked Clouds Using Proactive IntrospectionA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, G. Juve, M. Rynge, E. Deelman, J. Chase
In IEEE/ACM Utility and Cloud Computing (UCC)
2015BibTex

Online Task Resource Consumption Prediction for Scientific WorkflowsR. F. da Silva, G. Juve, M. Rynge, E. Deelman, M. Livny
In Parallel Processing Letters
2015BibTex

Practical Resource Monitoring for Robust High Throughput ComputingG. Juve, B. Tovar, R. F. da Silva, D. Krol, D. Thain, E. Deelman, W. Allcock, M. Livny
In Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications
2015BibTex

Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHCR. F. da Silva, M. Rynge, G. Juve, I. Sfiligoi, E. Deelman, J. Letts, F. Wurthwein, M. Livny
In Procedia Computer Science, International Conference On Computational Science, ICCS 2015 Computational Science at the Gates of Nature
2015, 39–48 pagesBibTex

Reproducibility of neuroimaging analyses across operating systemsT. Glatard, L. B. Lewis, R. F. da Silva, R. Adalat, N. Beck, C. Lepage, P. Rioux, M. - E. Rousseau, T. Sherif, E. Deelman, N. Khalili-Mahani, A. C. Evans
In Frontiers in Neuroinformatics
2015BibTex

The Case for Resource Sharing in Scientific Workflow ExecutionsR. Oda, D. Cordeiro, R. F. da Silva, E. Deelman, K. Braghetto
In XVI Simposio em Sistemas Computacionais de Alto Desempenho (WSCAD)
2015BibTex

Understanding the scientific software ecosystem and its impact: Current and future measuresJ. Howison, E. Deelman, M. J. McLennan, R. F. da Silva, J. D. Herbsleb
In Research Evaluation
2015, 454–470 pagesBibTex

Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost OptimizationM. Malawski, K. Figiela, M. Bubak, E. Deelman, J. Nabrzyski
In Scientific Programming
2015BibTex

Algorithms for Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS CloudsM. Malawski, G. Juve, E. Deelman, J. Nabrzyski
In Future Generator Computer Systems
2015, 1–18 pagesBibTex

Pegasus: a Workflow Management System for Science AutomationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. J. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. Wenger
In Future Generation Computer Systems
2015, 17–35 pagesBibTex

Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow ExecutionsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In Future Generation Computer Systems
2015, 69–84 pagesBibTex

Boutiques: an application-sharing system based on Linux containersT. Glatard, R. F. da Silva, N. Boujelben, R. Adalat, N. Beck, P. Rioux, M. - E. Rousseau, E. Deelman, A. C. Evans
In NeuroInformatics 2015
2015BibTex

Climate Science Performance, Data and Productivity on TitanB. Mayer, P. Worley, R. F. da Silva, A. Gaddis
In Cray User Group Conference
2015BibTex

Panorama: Modeling The Performance of Scientific WorkflowsE. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, R. F. da Silva
In Workshop on Modeling and Simulation of Systems and Applications (ModSim 2015)
2015BibTex

Pegasus, a Workflow Management System for Science AutomationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. J. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. Wenger
In Future Generation Computer Systems
2015, 17–35 pagesBibTex

Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirectA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In ACM SIGPLAN Notices
2015, 31–38 pagesBibTex

Reexamination of the evidence for entanglement in the D-Wave processorT. Albash, I. Hen, F. M. Spedalieri, D. A. Lidar
In arXiv:1506.03539
2015BibTex

Probing for quantum speedup in spin-glass problems with planted solutionsI. Hen, J. Job, T. Albash, T. F. Rønnow, M. Troyer, D. A. Lidar
In Phys. Rev. A
2015, 042325– pagesBibTex

Quantum annealing correction with minor embeddingW. Vinci, T. Albash, G. Paz-Silva, I. Hen, D. A. Lidar
In Phys. Rev. A
2015, 042310– pagesBibTex

Experimental quantum annealing: case study involving the graph isomorphism problemK. M. Zick, O. Shehab, M. C. French
In arXiv preprint arXiv:1503.06453
2015BibTex

A unified hardware/software MPSoC system construction and run-time frameworkS. Skalicky, A. G. Schmidt, S. Lopez, M. C. French
In Proceedings of the 2015 Design, Automation & Test in Europe Conference & Exhibition
2015, 301–304 pagesBibTex

IRIS (Integrity and Reliability in Integrated Circuits) Test Article Generation (ITAG)J. Draper, M. C. French
2015BibTex

HUBzero and Pegasus: integrating scientific workflows into science gatewaysM. McLennan, S. M. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. X. Song
In Concurrency and Computation: Practice and Experience
2015, 328–343 pagesBibTex

How Much Can the Total Aleatory Variability of Empirical Ground Motion Prediction Equations Be Reduced Using Physics-Based Earthquake Simulations?T. H. Jordan, F. Wang, R. W. Graves, S. Callaghan, K. B. Olsen, Y. Cui, K. R. Milner, G. Juve, K. Vahi, J. Yu, others
In AGU Fall Meeting Abstracts
2015BibTex

HUBzero and Pegasus: integrating scientific workflows into science gatewaysM. McLennan, S. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. Song
In Concurrency and Computation: Practice and Experience
2015, 328–343 pagesBibTex

Online Task Resource Consumption Prediction for Scientific WorkflowsR. F. da Silva, G. Juve, M. Rynge, E. Deelman, M. Livny
In Parallel Processing Letters
2015BibTex

Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHCR. F. da Silva, M. Rynge, G. Juve, I. Sfiligoi, E. Deelman, J. Letts, F. Würthwein, M. Livny
In Proceedings of the International Conference on Computational Science, ICCS 2015, Computational Science at the Gates of Nature, Reykjav'ık, Iceland, 1-3 June, 2015, 2014
2015, 39–48 pagesBibTex

Unraveling the Security Puzzle: A Distributed Framework to Build Trust in FPGAsD. M. Shila, V. Venugopalan, C. D. Patterson
In Network and System Security
2015, 95-111 pagesBibTex

Multi-Modal Sensor Registration for Vehicle Perception Via Deep Neural NetworksM. Giering, V. Venugopalan, K. Reddy
In IEEE High Performance Extreme Computing Conference (HPEC)
2015, 1-6 pagesBibTex

FIDES: Enhancing Trust in Reconfigurable Based Hardware SystemsD. M. Shila, V. Venugopalan, C. D. Patterson
In IEEE High Performance Extreme Computing Conference (HPEC)
2015, 1-7 pagesBibTex

GPU Acceleration of Iterative Physical Optics-Based Electromagnetic SimulationsV. Venugopalan, C. Tokgoz
In IEEE High Performance Extreme Computing Conference (HPEC)
2015, 1-6 pagesBibTex

RGBD Occlusion Detection via Deep Convolutional Neural NetworksS. Sarkar, V. Venugopalan, K. Reddy, M. Giering, J. Ryde, N. Jaitly
In NVIDIA GPU Technology Conference
2015BibTex

Reexamination of the evidence for entanglement in a quantum annealerT. Albash, I. Hen, F. M. Spedalieri, D. A. Lidar
In Phys. Rev. A
2015, 062328 pagesBibTex

2014

Evaluating High-level Program Invariants using Reconfigurable HardwareJ. Park, P. C. Diniz
In Proc. of the Intl. Symp. on Applied Reconfigurable Computing (ARC'14)
2014BibTex

GPU Passthrough Performance: A Comparison of KVM, Xen, VMWare ESXi, and LXC for CUDA and OpenCL ApplicationsJ. P. Walters, A. Younge, D. - I. Kang, K. - T. Yao, M. Kang, S. P. Crago, G. Fox
In International Conference on Cloud Computing
2014BibTex

Bridging the Virtualization Performance Gap for HPC Using SR-IOV for InfiniBandM. Musleh, V. Pai, J. P. Walters, A. Younge, S. P. Crago
In International Conference on Cloud Computing
2014BibTex

Evaluating GPU Passthrough in Xen for High Performance Cloud ComputingA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In Workshop on High-Performance Grid and Cloud Computing (HPGC)
2014BibTex

Dynamic Runtime Optimizations for Systems of Heterogeneous ArchitecturesG. P. Tran, D. - I. Kang, S. P. Crago
In Eighteenth Annual IEEE High Performance Extreme Computing Conference
2014BibTex

Energy Performance of FPGAs on PERFECT Suite KernelsS. R. Kuppannagari, R. Chen, A. Sanny, S. G. Singapura, G. P. Tran, S. Zhou, Y. Hu, S. P. Crago, V. K. Prasanna
In Eighteenth Annual IEEE High Performance Extreme Computing Conference
2014BibTex

Bridging the Virtualization Performance Gap for HPC Using SR-IOV for InfiniBandM. Musleh, V. Pai, J. P. Walters, A. Younge, S. P. Crago
In International Conference on Cloud Computing
2014BibTex

Maestro Software and Application PerformanceJ. P. Walters, C. M. Rogers, S. P. Crago
In GOMACTech-14
2014BibTex

Evaluating GPU Passthrough in Xen for High Performance Cloud ComputingA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In Workshop on High-Performance Grid and Cloud Computing (HPGC)
2014BibTex

Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow ExecutionsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In Future Generation Computer Systems
2014BibTex

Practical Resource Monitoring for Robust High Throughput ComputingG. Juve, B. Tovar, R. F. da Silva, C. Robinson, D. Thain, E. Deelman, W. Allcock, M. Livny
2014BibTex

Cost Optimization of Execution of Multi-level Deadline-Constrained Scientific Workflows on CloudsM. Malawski, K. Figiela, M. Bubak, E. Deelman, J. Nabrzyski
In Parallel Processing and Applied Mathematics
2014, 251-260 pagesBibTex

A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow ExecutionsS. Srinivasan, G. Juve, R. F. da Silva, K. Vahi, E. Deelman
In 9th Workshop on Workflows in Support of Large-Scale Science (WORKS)
2014BibTex

A Performance Model to Estimate Execution Time of Scientific Workflows on the CloudI. Pietri, G. Juve, E. Deelman, R. Sakellariou
In 9th Workshop on Workflows in Support of Large-Scale Science (WORKS)
2014BibTex

Community Resources for Enabling Research in Distributed Scientific WorkflowsR. F. da Silva, W. Chen, G. Juve, K. Vahi, E. Deelman
In 10th IEEE International Conference on e-Science (eScience 2014)
2014BibTex

A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case StudyI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In 1st International Workshop on Reproducibility in Parallel Computing (REPPAR), in conjunction with Euro-Par 2014
2014BibTex

A Unified Approach for Modeling and Optimization of Energy, Makespan and Reliability for Scientific Workflows on Large-Scale Computing InfrastructuresR. F. da Silva, T. Fahringer, J. J. Durillo, E. Deelman
In Workshop on Modeling and Simulation of Systems and Applications (MODSIM)
2014BibTex

Extending provenance information in CBRAIN to address reproducibility issues across computing platformsT. Glatard, L. B. Lewis, R. F. da Silva, M. - E. Rousseau, C. Lepage, P. Rioux, N. Mahani, E. Deelman, A. C. Evans
In NeuroInformatics 2014
2014BibTex

Leveraging Semantics to Improve Reproducibility in Scientific WorkflowsI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In The reproducibility at XSEDE workshop
2014BibTex

A Human-Building Interaction Framework for Personalized Thermal Comfort Driven Systems in Office Buildings, " ASCE Journal of Computing in Civil EngineeringF. Jazizadeh, A. Ghahramani, B. Becerik-Gerber, T. Kichkaylo, M. Orosz
2014BibTex

User-Led Decentralized Thermal Comfort Driven HVAC Operations for Improved Efficiency in Office BuildingsF. Jazizadeh, A. Ghahramani, B. Becerik-Gerber, T. Kichkaylo, M. Orosz
In http://dx.doi.org/10.1016/j.enbuild.2013.11.066, Energy and Buildings
2014BibTex

High Level Hardware/Software Embedded System Design with RedsharcS. Skalicky, A. G. Schmidt, M. C. French
In International Workshop on FPGAs for Software Programmers
2014BibTex

Community Resources for Enabling and Evaluating Research on Scientific WorkflowsR. F. da Silva, W. Chen, G. Juve, K. Vahi, E. Deelman
In 10th IEEE International Conference on e-Science
2014, 177–184 pagesBibTex

Experiments with Complex Scientific Applications on Hybrid Cloud InfrastructuresM. Malawski, P. Nowakowski, T. Gubala, M. Kasztelnik, M. Bubak, R. F. da Silva, E. Deelman, J. Nabrzyski
In NSFCloud Workshop on Experimental Support for Cloud Computing
2014BibTex

Continuous-time quantum algorithms for unstructured problemsI. Hen
2014, 045305 pagesBibTex

High level hardware/software embedded system design with redsharcS. Skalicky, A. G. Schmidt, M. C. French
In arXiv preprint arXiv:1408.4725
2014BibTex

Content-Oriented Mobile Edge Technology System Integration Framework and Field EvaluationZ. Cao, M. C. French, R. Krishnan, J. Ng, D. Talmage, Q. Zhang
In Military Communications Conference (MILCOM), 2014 IEEE
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Intra-die process variation aware anomaly detection in FPGAsY. Pino, V. Jyothi, M. C. French
In Test Conference (ITC), 2014 IEEE International
2014, 1–6 pagesBibTex

High-precision self-characterization for the LUT burn-in information leakage threatK. M. Zick, S. Li, M. C. French
In Field Programmable Logic and Applications (FPL), 2014 24th International Conference on
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A cleanup algorithm for implementing storage constraints in scientific workflow executionsS. Srinivasan, G. Juve, R. F. da Silva, K. Vahi, E. Deelman
In Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, WORKS '14, New Orleans, Louisiana, USA, November 16-21, 2014
2014, 41–49 pagesBibTex

Optimizing CyberShake Seismic Hazard Workflows for Large HPC ResourcesS. Callaghan, P. J. Maechling, G. Juve, K. Vahi, E. Deelman, T. H. Jordan
In AGU Fall Meeting Abstracts
2014BibTex

Using Cloud Computing To Create A Multi-Wavelength Atlas Of The Galactic PlaneG. B. Berriman, J. Good, M. Rynge, G. Juve, E. Deelman, J. Kinney, A. Merrihew
In American Astronomical Society Meeting Abstracts# 223
2014BibTex

Evaluating Latency and Throughput Bound Acceleration of FPGAs and GPUs for Adaptive Optics AlgorithmsV. Venugopalan
In IEEE High Performance Extreme Computing Conference (HPEC)
2014, 1-6 pagesBibTex

Design, Implementation and Security Analysis of Hardware Trojan Threats in FPGAD. M. Shila, V. Venugopalan
In IEEE International Conference on Communications (ICC)
2014, 719-724 pagesBibTex

A Multi-parameter Detection Scheme to Seek Stealthy Hardware Trojan Threats in FPGAsD. M. Shila, V. Venugopalan, B. Murray
In SAE International CyberSecurity For Cyber-Physical Vehicle Systems
2014BibTex

xDEFENSE: An Extended DEFENSE for Mitigating Next Generation IntrusionsJ. Lamberti, D. M. Shila, V. Venugopalan
In Proceedings of the 2014 ACM/SIGDA International Symposium on Field-programmable Gate Arrays
2014, 253–253 pagesBibTex

Entanglement in a Quantum Annealing ProcessorT. Lanting, A. J. Przybysz, Y. A. Smirnov, F. M. Spedalieri, M. H. Amin, A. J. Berkley, R. Harris, F. Altomare, S. Boixo, P. Bunyk, N. Dickson, C. Enderud, J. P. Hilton, E. Hoskinson, M. W. Johnson, E. Ladizinsky, N. Ladizinsky, R. Neufeld, T. Oh, I. Perminov, C. Rich, M. C. Thom, E. Tolkacheva, S. Uchaikin, A. B. Wilson, G. Rose
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A Practical Characterization of a NASA SpaceCube Application through Fault Emulation and Laser TestingJ. P. Walters, K. M. Zick, M. French
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The MATISSE MATLAB CompilerJ. Bispo, P. Pinto, R. Nobre, T. Carvalho, J. M. P. Cardoso, P. C. Diniz
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Specifying Adaptations through a DSL with an Application to Mobile Robot NavigationA. C. Santos, J. M. P. Cardoso, P. C. Diniz, D. R. Ferreira
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Fast Lossless Image Compression with Radiation Hardening By Hardware/Software Co-Design on Platform FPGAsA. G. Schmidt, M. C. French
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Implementation of Kernels on the Maestro ProcessorJ. Suh, D. Kang, S. P. Crago
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Evaluating I/O Aware Network Management for Scientific Workflows on Networked CloudsA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, M. Rynge, E. Deelman
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Balanced Task Clustering in Scientific WorkflowsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In 9th IEEE International Conference on e-Science (eScience 2013)
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Producing an Infrared Multiwavelength Galactic Plane Atlas using Montage, Pegasus and Amazon Web ServicesM. Rynge, G. Juve, J. Kinney, J. Good, B. G. Berriman, A. Merrihew, E. Deelman
In 23rd Annual Astronomical Data Analysis Software and Systems (ADASS) Conference
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Toward Fine-Grained Online Task Characteristics Estimation in Scientific WorkflowsR. F. da Silva, G. Juve, E. Deelman, T. Glatard, F. Desprez, D. Thain, B. Tovar, M. Livny
In 8th Workshop On Workflows in Support of Large-Scale Science (WORKS)
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Introducing PRECIP: An API for Managing Repeatable Experiments in the CloudS. Azarnoosh, M. Rynge, G. Juve, E. D. M. Nieć, M. Malawski, R. F. da Silva
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Imbalance Optimization in Scientific WorkflowsW. Chen, E. Deelman, R. Sakellariou
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Rethinking Data Management for Big Data Scientific WorkflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
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Energy-Constrained Provisioning for Scientific Workflow EnsemblesI. Pietri, M. Malawski, G. Juve, E. Deelman, J. Nabrzyski, R. Sakellariou
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Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific WorkflowsG. Juve, M. Rynge, E. Deelman, J. - S. Vöckler, B. G. Berriman
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Hosted Science: Managing Computational Workloads in the CloudE. Deelman, G. Juve, M. Malawski, J. Nabrzyski
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Bringing Scientific Workflow to the Masses via Pegasus and HUBzeroM. McLennan, S. Clark, F. McKenna, E. Deelman, M. Rynge, K. Vahi, D. Kearney, C. Song
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A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific WorkflowsK. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. Mehta, E. D. andrew Jones
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The Application of Cloud Computing to Scientific Workflows: A Study of Cost and PerformanceB. G. Berriman, G. Juve, J. - S. Vöckler, E. Deelman, M. Rynge
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Characterizing and Profiling Scientific WorkflowsG. Juve, A. Chervenak, E. Deelman, S. Bharathi, G. Mehta, K. Vahi
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A Systematic Approach to Occupancy Modeling in Ambient Sensor Rich Office Environments, Simulation: Transactions of the Society for Modeling and Simulation InternationalZ. Yang, N. Li, B. Becerik-Gerber, M. Orosz
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�Protecting our Nation�s Ports with the Port Security Risk Analysis and Resource Allocation System (PortSec 3M. Orosz, J. Chen, I. Maya, D. Salazar, S. Chatterjee, D. Wei
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A Virtual Imaging Platform for Multi-Modality Medical Image SimulationT. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, N. Cerezo, P. Clarysse, A. Gaignard, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary, D. Friboulet
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Toward fine-grained online task characteristics estimation in scientific workflowsR. F. da Silva, G. Juve, E. Deelman, T. Glatard, F. Desprez, D. Thain, B. Tovar, M. Livny
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Period Finding with Adiabatic Quantum ComputationI. Hen
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Open-source bitstream generationR. K. Soni, N. Steiner, M. C. French
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Sensing nanosecond-scale voltage attacks and natural transients in fpgasK. M. Zick, M. Srivastav, W. Zhang, M. C. French
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Fast lossless image compression with radiation hardening by hardware/software co-design on platform FPGAsA. G. Schmidt, M. C. French
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A practical characterization of a NASA SpaceCube application through fault emulation and laser testingJ. P. Walters, K. M. Zick, M. C. French
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Characterizing and profiling scientific workflowsG. Juve, A. L. Chervenak, E. Deelman, S. Bharathi, G. Mehta, K. Vahi
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A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific WorkflowsK. Vahi, I. Harvey, T. Samak, D. K. Gunter, K. Evans, D. H. Rogers, I. J. Taylor, M. Goode, F. Silva, E. A. -, G. Mehta, E. Deelman, A. Jones
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Rethinking data management for big data scientific workflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
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Bringing Scientific Workflow to the Masses via Pegasus and HUBzeroM. McLennan, S. M. Clark, F. McKenna, E. Deelman, M. Rynge, K. Vahi, D. Kearney, C. X. Song
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The application of cloud computing to scientific workflows: a study of cost and performanceB. G. Berriman, E. Deelman, G. Juve, M. Rynge, J. - S. Vöckler
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Comparing futuregrid, amazon ec2, and open science grid for scientific workflowsG. Juve, M. Rynge, E. Deelman, J. - S. Vockler, B. G. Berriman
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Bringing scientific workflow to the masses via pegasus and hubzeroM. McLennan, S. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. Song
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Snowmass energy frontier simulations using the open science grid (a Snowmass 2013 whitepaper)A. Avetisyan, S. Bhattacharya, M. Narain, S. Padhi, J. Hirschauer, T. Levshina, P. McBride, C. Sehgal, M. Slyz, M. Rynge, others
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Rethinking data management for big data scientific workflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
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Evaluating i/o aware network management for scientific workflows on networked cloudsA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, M. Rynge, E. Deelman
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Introducing precip: an api for managing repeatable experiments in the cloudS. Azarnoosh, M. Rynge, G. Juve, E. Deelman, M. Niec, M. Malawski, R. F. da Silva
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Creating A Galactic Plane Atlas With Amazon Web ServicesB. G. Berriman, E. Deelman, J. Good, G. Juve, J. Kinney, A. Merrihew, M. Rynge
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Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific WorkflowsG. Juve, M. Rynge, E. Deelman, J. -, B. G. Berriman
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Accelerating Real-Time LIDAR Data Processing Using GPUsV. Venugopalan, S. Kannan
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GPU Accelerated Iterative Physical Optics to Predict RF Propagation in Urban EnvironmentsC. Tokgoz, V. Venugopalan
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High Throughput Implementations of Cryptography Algorithms on GPU and FPGAV. Venugopalan, D. M. Shila
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Hardware acceleration of TEA and XTEA algorithms on FPGA, GPU and multi-core processorsV. Venugopalan, D. M. Shila
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Experimental signature of programmable quantum annealingS. Boixo, T. Albash, F. M. Spedalieri, N. Chancellor, D. A. Lidar
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2012

Silent Data Corruption and Embedded Processing With NASA's SpaceCubeK. M. Zick, C. C. Yu, J. P. Walters, M. French
In Embedded Systems Letters, IEEE
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Applying Radiation Hardening by Software to Fast Lossless compression prediction on FPGAsA. G. Schmidt, J. P. Walters, K. M. Zick, M. French, D. Keymeulen, N. Aranki, M. Klimesh, A. Kiely
In Aerospace Conference, 2012 IEEE
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Energy Consumption Scheduler for Demand Response Systems in the Smart GridJ. Lee, H. - J. Kim, G. - L. Park, M. Kang
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HwPMI: An Extensible Performance Monitoring Infrastructure for Improving Hardware Design and Productivity on FPGAsA. G. Schmidt, N. Stiner, M. C. French, R. Sass
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An Evaluation of an Integrated On-Chip/Off-Chip Network for High Performance Reconfigurable ComputingA. G. Schmidt, W. V. Kritikos, S. Gao, R. Sass
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Integrating Fast Lossless Compression Prediction with Radiation Hardening by Software on FPGAsA. G. Schmidt, J. P. Walters, M. C. French, D. Keymeulen, N. Aranki, M. Klimesh, A. Kiely
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Integrating High Performance File Systems in a Cloud Computing EnvironmentA. Pan, J. P. Walters, V. S. Pai, D. I. D. Kang, S. P. Crago
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Specifying Compilation Strategies for FPGA-based SystemsJ. M. P. Cardoso, J. Teixeira, J. Alves, R. Nobre, P. C. Diniz, J. Coutinho, W. Luk
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LARA: An Aspect-Oriented Programming Language for Embedded SystemsJ. M. P. Cardoso, T. Carvalho, J. Coutinho, W. Luk, R. Nobre, P. C. Diniz, Z. Petrov
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Integrating High Performance File Systems in a Cloud Computing EnvironmentA. Pan, J. P. Walters, V. Pai, D. Kang, S. P. Crago
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Implementation of FFT and CRBLASTER on the Maestro ProcessorJ. Suh, K. J. Mighell, D. I. Kang, S. P. Crago
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A General Approach to Real-time Workflow MonitoringK. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. M. andrew Jones, E. Deelman
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Integrating Policy with Scientific Workflow Management for Data-Intensive ApplicationsA. L. Chervenak, D. E. Smith, W. Chen, E. Deelman
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Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2R. Agarwal, G. Juve, E. Deelman
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A Tale Of 160 Scientists, Three Applications, A Workshop and A CloudB. G. Berriman, C. Brinkworth, D. Gelino, D. K. Wittman, E. Deelman, G. Juve, M. Rynge, J. Kinney
In Astronomical Data Analysis Software and Systems XXII
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WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed EnvironmentsW. Chen, E. Deelman
In The 8th IEEE International Conference on eScience 2012 (eScience 2012)
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Failure Analysis of Distributed Scientific Workflows Executing in the CloudT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, F. Silva
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Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS CloudsM. Malawski, G. Juve, E. Deelman, J. Nabrzyski
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An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2G. Juve, E. Deelman, B. G. Berriman, B. P. Berman, P. J. Maechling
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Using Clouds for Science, Is it Just Kicking the Can Down The Road?E. Deelman, G. Juve, B. G. Berriman
In 2nd International Conference on Cloud Computing and Services Science (CLOSER 2012)
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Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/WorkerM. Rynge, G. Juve, K. Vahi, S. Callaghan, G. Mehta, P. J. Maechling, E. Deelman
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Fault Tolerant Clustering in Scientific WorkflowsW. Chen, E. Deelman
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Integration of Workflow Partitioning and Resource ProvisioningW. Chen, E. Deelman
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A Non-Intrusive Occupancy Monitoring System for Demand Driven HVAC Operations, (http://cedb.asce.org/cgi/WWWdisplay.cgi?289937), Proceedings, CRC 2012: Construction Research Congress: Construction Challenges in a Flat World, ASCE, RestonY. Z, L. N, B. - G. B, O. M.
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�PortSec2E. Lennon, M. Orosz, T. Kichkaylo, I. Maya, D. Wei
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�A Multi-Sensor Based Occupancy Estimation Model for Supporting Demand Driven HVAC Operations, � in Proceedings of Simulation for Architecture and Urban Design (SimAUD) (http://toc.proceedings.com/14527webtoc.pdf), Orlando, FLY. Z, L. N, B. - G. B, O. M.
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Solving the graph-isomorphism problem with a quantum annealerI. Hen, A. P. Young
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Performance of the quantum adiabatic algorithm on random instances of two optimization problems on regular hypergraphsE. Farhi, D. Gosset, I. Hen, A. W. Sandvik, P. Shor, A. P. Young, F. Zamponi
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Redsharc: A programming model and on-chip network for multi-core systems on a programmable chipW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. C. French
In International Journal of Reconfigurable Computing
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Hwpmi: an extensible performance monitoring infrastructure for improving hardware design and productivity on fpgasA. G. Schmidt, N. Steiner, M. C. French, R. Sass
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2012, 2 pagesBibTex

Silent data corruption and embedded processing with NASA's SpaceCubeK. M. Zick, C. - C. Yu, J. P. Walters, M. C. French
In IEEE Embedded Systems Letters
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In Aerospace Conference, 2012 IEEE
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Failure analysis of distributed scientific workflows executing in the cloudT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, F. Silva, K. Vahi
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A General Approach to Real-Time Workflow MonitoringK. Vahi, I. Harvey, T. Samak, D. K. Gunter, K. Evans, D. H. Rogers, I. J. Taylor, M. Goode, F. Silva, E. A. -, G. Mehta, A. Jones, E. Deelman
In 2012 SC Companion: High Performance Computing, Networking Storage and Analysis, Salt Lake City, UT, USA, November 10-16, 2012
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Curating genomic epidemiology data in The PAGE StudyG. Kumaraguruparan, G. Mehta, A. Nato, J. L. Ambite, S. Buyske, R. Mayani, C. Cai, J. Vöckler, E. Deelman, T. Matise
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Enabling large-scale scientific workflows on petascale resources using MPI master/workerM. Rynge, S. Callaghan, E. Deelman, G. Juve, G. Mehta, K. Vahi, P. J. Maechling
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Supporting shared resource usage for a diverse user community: the OSG experience and lessons learnedG. Garzoglio, T. Levshina, M. Rynge, C. Sehgal, M. Slyz
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A Tale Of 160 Scientists, Three Applications, A Workshop and A CloudB. G. Berriman, C. Brinkworth, D. Gelino, D. K. Wittman, E. Deelman, G. Juve, M. Rynge, J. Kinney
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High-performance compute infrastructure in astronomy: 2020 is only months awayB. Berriman, E. Deelman, G. Juve, M. Rynge, J. - S. Vöckler
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Design and Performance Measurement of a High-Performance Computing ClusterK. George, V. Venugopalan
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Accelerating Real-Time Processing of the ATST Adaptive Optics SystemV. Venugopalan
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Detecting entanglement with partial state informationF. M. Spedalieri
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2011

The PowerPC 405 Memory Sentinel and Injection SystemM. Bucciero, J. P. Walters, R. Moussalli, S. Gao, M. C. French
In Field-Programmable Custom Computing Machines (FCCM), 2011 IEEE 19th Annual International Symposium on
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Checkpoint/Restart and Beyond: Resilient High Performance Computing with FPGAsA. G. Schmidt, B. Huang, R. Sass, M. C. French
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Torc: towards an open-source tool flowN. Steiner, A. Wood, H. Shojaei, J. Couch, P. Athanas, M. C. French
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Software fault tolerance methodology and testing for the embedded PowerPCM. Bucciero, J. P. Walters, M. C. French
In Aerospace Conference, 2011 IEEE
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Autonomous On-board Processing for Sensor Systems: Initial Fault Tolerance and Autonomy ResultsM. C. French, J. P. Walters, M. Bucceiro
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Software fault tolerance methodology and testing for the embedded PowerPCM. Bucciero, J. P. Walters, M. C. French
In Aerospace Conference, 2011 IEEE
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Autonomous On-board Processing for Sensor Systems: Initial Fault Tolerance and Autonomy ResultsM. C. French, J. P. Walters, M. Bucceiro
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Buffered retransmission on the grid-style wireless process control networksJ. Lee, G. - L. Park, I. - H. Shin, M. Kang
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Design and development of a run-time monitor for multi-core architectures in cloud computingM. Kang, D. - I. Kang, S. P. Crago, G. - L. Park, J. Lee
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Heterogeneous cloud computingS. P. Crago, K. Dunn, P. Eads, L. Hochstein, D. - I. Kang, M. Kang, D. Modium, K. Singh, J. Suh
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Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. - I. Kang, M. Kang, R. Kost, K. Singh, J. P. Walters
In 4th IEEE International Conference on Space Mission Challenges for Information Technology (SMC-IT)
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Investigation into Scaling I/O Bound Streaming Applications Productively with an all-FPGA ClusterA. G. Schmidt, S. Datta, A. A. Mendon, R. Sass
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Redsharc: A Programming Model and On-Chip Network for Multi-Core Systems on a Programmable ChipW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. C. French
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Improving Design Productivity with a Hardware Performance Monitoring InfrastructureA. G. Schmidt, R. Sass
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2011BibTex

A Radix Tree Router for Scalable FPGA NetworksW. V. Kritikos, Y. Rajasekhar, A. G. Schmidt, R. Sass
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2011BibTex

Reconfigurable Computing Cluster Project: A Five-Year Perspective of the ProjectR. Sass, A. G. Schmidt, S. Buscemi
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Checkpoint/Restart and Beyond: Resilient High Performance Computing with FPGAsA. G. Schmidt, B. Huang, R. Sass, M. C. French
In Proceedings of the 19th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'11)
2011, 162–169 pagesBibTex

Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. I. Kang, M. Kang, R. Kost, K. Singh, J. Suh, J. P. Walters
In Space Mission Challenges for Information Technology (SMC-IT), 2011 IEEE Fourth International Conference on
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FFTW and Complex Ambiguity Function Performance on the Maestro ProcessorK. Singh, J. P. Walters, J. Hestness, J. Suh, C. M. Rogers, S. P. Crago
In Aerospace Conference, 2011 IEEE
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Software Fault Tolerance Methodology and Testing for the Embedded PowerPCM. Bucciero, J. P. Walters, M. French
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Heterogeneous Cloud ComputingS. P. Crago, K. Dunn, P. Eads, L. Hochstein, D. I. Kang, M. Kang, D. Modium, K. Singh, J. Suh, J. P. Walters
In Workshop on Parallel Programming on Accelerator Clusters (PPAC)
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Software-Based Fault Tolerance for the Maestro Many-Core ProcessorJ. P. Walters, R. Kost, K. Singh, J. Suh, S. P. Crago
In Aerospace Conference, 2011 IEEE
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The PowerPC 405 Memory Sentinel and Injection SystemM. Bucciero, J. P. Walters, R. Moussalli, S. Gao, M. French
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Automatic Early Failure Detection for Rod Pump SystemsS. Liu, C. S. Raghavendra, Y. Liu, K. - T. Yao, T. L. Lenz, L. Olabinjo, O. Balogun, D. C. G. Babu, I. Ershaghi
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Semi-supervised Failure Prediction for Oil Production WellsY. Liu, K. - T. Yao, S. Liu, C. S. Raghavendra, O. Balogun, L. Olabinjo
In Workshop on Domain Driven Data Mining at International Conference on Data Mining
2011BibTex

Using FPGAs for Data Reorganization and Pre-Fetching of Pointer-based Data Structures for Scientific ComputationsJ. Park, P. C. Diniz
In IEEE Trans. in Design and Test in Computers: Special Issue on Design Methods and Tools for FPGA-Based Acceleration of Scientific Computing
2011BibTex

Domain-Specific Optimization of Signal Recognition Targeting FPGAsM. Demertzi, P. C. Diniz, M. W. Hall, A. C. Gilbert, Y. Wang
In ACM Trans. on Reconfigurable Technology and Systems (TRETS)
2011BibTex

Programming Safety Requirements in the REFLECT Design FlowZ. Petrov, K. Kraty, J. M. P. Cardoso, P. C. Diniz
In Proc. of the Ninth IEEE Intl. Conf. on Industrial Informatics (INDIN'2011)
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A Domain-Specific Language for the Specification of Adaptable Context InferenceA. C. Santos, P. C. Diniz, J. M. P. Cardoso, D. R. Ferreira
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Custom FPGA-based Micro-Architecture for Streaming ComputingJ. C. Alves, P. C. Diniz
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2011BibTex

Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. I. Kang, R. Kost, K. Singh, J. Suh, J. P. Walters
In Fourth IEEE International Conference on Space Mission Challenges for Information Technology
2011BibTex

Multi-Core Fault Tolerance for SpaceS. P. Crago, J. P. Walters, R. Kost, K. Singh, J. Suh
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Software-Based Fault Tolerance for the Maestro Many-Core ProcessorJ. P. Walters, R. Kost, K. Singh, J. Suh, S. P. Crago
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FFTW and Complex Ambiguity Function Performance on the Maestro ProcessorK. Singh, J. P. Walters, J. Hestness, J. Suh, C. M. Rogers, S. P. Crago
In IEEE Aerospace Conference
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Experiences Using GlideinWMS and the Corral Frontend Across CyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Würthwein, B. G. Berriman, S. Callaghan
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Automating Application Deployment in Infrastructure CloudsG. Juve, E. Deelman
In 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011)
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A Cloud‐based Dynamic Workflow for Mass Spectrometry Data AnalysisA. Nagavaram, G. Agrawal, M. Freitas, G. Mehta, R. Mayani, E. Deelman
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Workflow Overhead Analysis and OptimizationsW. Chen, E. Deelman
In 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11)
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Failure Prediction and Localization in Large Scientific WorkflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Mehta, F. Silva, K. Vahi
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Online Workflow Management and Performance Analysis with StampedeD. Gunter, E. Deelman, T. Samak, C. Brooks, M. Goode, G. Juve, G. Mehta, P. Moraes, F. Silva, M. Swany, K. Vahi
In 7th International Conference on Network and Service Management (CNSM-2011)
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Partitioning and Scheduling Workflows across Multiple Sites with Storage ConstraintsW. Chen, E. Deelman
In 9th International Conference on Parallel Processing and Applied Mathmatics
2011BibTex

Online Fault and Anomaly Detection for Large-Scale Scientific WorkflowsT. Samak, D. Gunter, E. Deelman, G. Juve, G. Mehta, F. Silva, K. Vahi
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Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science ApplicationS. Callaghan, P. Maechling, P. Small, K. Milner, G. Juve, T. H. Jordan, E. Deelman, G. Mehta, K. Vahi, D. Gunter, K. Beattie
In International Journal of High Performance Computing Applications
2011, 274-285 pagesBibTex

Enabling Data and Compute Intensive Workflows in BioinformaticsG. Mehta, E. Deelman, J. A. Knowles, T. Chen, Y. Wang, J. - S. Vöckler, S. Buyske, T. Matise
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RseqFlow: Workflows for RNA-Seq Data AnalysisY. Wang, G. Mehta, R. Mayani, J. Lu, T. Souaiaia, Y. C. andrew Clark, H. J. Yoon, L. Wan, O. V. Evgrafov, J. A. Knowles, E. Deelman, T. Chen
In Bioinformatics
2011, 2598-2600 pagesBibTex

BTS: Resource Capacity Estimate for Time-targeted Science WorkflowsE. - K. Byun, Y. - S. Kee, J. - S. Kim, E. Deelman, S. Maeng
In Journal of Parallel and Distributed Computing: Special Issue on Cloud Computing
2011, 848-862 pagesBibTex

Ten years of software sustainability at the Infrared Processing and Analysis CenterB. G. Berriman, J. Good, E. Deelman, A. Alexov
In Phil. Trans. R. Soc. A
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Wrangler: Virtual Cluster Provisioning for the CloudG. Juve, E. Deelman
In Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11)
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Experiences Using Cloud Computing for A Scientific Workflow ApplicationJ. - S. Vöckler, G. Juve, E. Deelman, M. Rynge, B. G. Berriman
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2011BibTex

Exponential complexity of the quantum adiabatic algorithm for certain satisfiability problemsI. Hen, A. P. Young
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Metrics for heterogeneous scientific workflows: A case study of an earthquake science applicationS. Callaghan, P. Maechling, P. Small, K. Milner, G. Juve, T. H. Jordan, E. Deelman, G. Mehta, K. Vahi, D. Gunter, K. Beattie, C. X. Brooks
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Online workflow management and performance analysis with StampedeD. Gunter, E. Deelman, T. Samak, C. X. Brooks, M. Goode, G. Juve, G. Mehta, P. Moraes, F. Silva, M. D. Swany, K. Vahi
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Online Fault and Anomaly Detection for Large-Scale Scientific WorkflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, G. Mehta, F. Silva, K. Vahi
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Failure prediction and localization in large scientific workflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Mehta, F. Silva, K. Vahi
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Experiences using cloud computing for a scientific workflow applicationJ. - S. Vöckler, G. Juve, E. Deelman, M. Rynge, B. Berriman
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RseqFlow: workflows for RNA-Seq data analysisY. Wang, G. Mehta, R. Mayani, J. Lu, T. Souaiaia, Y. Chen, A. P. Clark, H. J. Yoon, L. Wan, O. V. Evgrafov, J. A. Knowles, E. Deelman, T. Chen
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2011, 2598–2600 pagesBibTex

A Cloud-based Dynamic Workflow for Mass Spectrometry Data AnalysisA. Nagavaram, G. Agrawal, M. A. Freitas, K. H. Telu, G. Mehta, R. Mayani, E. Deelman
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Experiences using glideinWMS and the corral frontend across cyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Wurthwein, B. G. Berriman, S. Callaghan
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Experiences Using GlideinWMS and the Corral Frontend across CyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Würthwein, B. G. Berriman, S. Callaghan
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Accelerating Real-Time Processing of the ATST Adaptive Optics System Using Coarse-Grained Parallel Hardware ArchitecturesV. Venugopalan, K. Richards, S. Barden, T. Rimmele, S. Gregory, L. Johnson
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2011, 296-301 pagesBibTex

Real-time Control for the Advanced Technology Solar TelescopeV. Venugopalan
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2011BibTex

2010

Merging Programming Models and On-chip Networks to Meet the Programmable and Performance Needs of Multi-core Systems on a Programmable ChipA. G. Schmidt, W. V. Kritikos, R. Sass, E. K. Anderson, M. C. French
In Reconfigurable Computing and FPGAs (ReConFig), 2010 International Conference on
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Radiation Hardening by Software for the Embedded PowerPC, Preliminary FindingsJ. P. Walters, M. Bucciero, M. C. French
In ReSpace / MAPLD Conference
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Autonomous On-board Processing for Sensor Systems: High Performance Fault Tolerance TechniquesM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
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Radiation Hardening by Software for the Embedded PowerPC, Preliminary FindingsJ. P. Walters, M. Bucciero, M. C. French
In ReSpace / MAPLD Conference
2010BibTex

Autonomous On-board Processing for Sensor Systems: High Performance Fault Tolerance TechniquesM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
2010BibTex

Redsharc: An Abstract Stream Programming Model for FPGAsW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. Sika, M. C. French
In Proceedings of the 18th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'10)
2010BibTex

Embedded Systems Design with Platform FPGAs: Principles & PracticesR. Sass, A. G. Schmidt
2010BibTex

Merging Programming Models and On-Chip Networks to Meet the Programmable and Performance Needs of Multi-Core Systems on a Programmable ChipA. G. Schmidt, W. V. Kritikos, R. Sass, E. K. Anderson, M. C. French
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2010, 334–339 pagesBibTex

Impact of Reconfigurable Hardware on Accelerating MPI_ReduceS. Gao, A. G. Schmidt, R. Sass
In Proceedings of the 9th Annual International Conference on Field Programmable Technology (FPT'10)
2010, 29–36 pagesBibTex

Investigating Resilient High Performance Reconfigurable Computing with Minimally-Invasive System MonitoringB. Huang, A. G. Schmidt, A. A. Mendon, R. Sass
In International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA'10)
2010, 1–8 pagesBibTex

Productively Scaling I/O Bound Streaming Applications with a Cluster of FPGAsA. G. Schmidt, S. Datta, A. A. Mendon, R. Sass
In Symposium on Application Accelerators in High-Performance Computing (SAAHPC'10)
2010BibTex

Applying Graphics Processor Units to Monte Carlo Dose Calculation in Radiation TherapyM. Bakhtiari, H. Malhotra, M. D. Jones, V. Chaudhary, J. P. Walters, D. Nazareth
In Journal of medical physics/Association of Medical Physicists of India
2010, 120 pagesBibTex

Database Searching with Profile-Hidden Markov Models on Reconfigurable and Many-Core ArchitecturesJ. P. Walters, V. Chaudhary, B. Schmidt
In Bioinformatics: high performance parallel computer architectures
2010, 203 pagesBibTex

Computation Checkpointing and MigrationV. Chaudhary, J. P. N. Walters, H. Jiang
2010BibTex

Failure Prediction for Artificial Lift SystemsY. Liu, K. - T. Yao, S. Liu, C. S. Raghavendra, T. L. Lenz, L. Olabinjo, B. Seren, S. Seddighrad, C. G. D. Babu
In SPE Western Regional Meeting
2010BibTex

Hybrid Constrained Nonlinear Optimization to Injector-Producer Relationships in Oil FieldsH. Lee, K. - T. Yao, O. O. Okpani, A. Nakano, I. Ershaghi
In International Journal of Computer Science
2010BibTex

Identifying Injector-Producer Relationship in Waterflood Using Hybrid Constrained Nonlinear OptimizationH. Lee, K. - T. Yao, O. O. Okpani, A. Nakano, I. Ershaghi
In SPE Western Regional Meeting
2010BibTex

Dynamic structure Learning of Factor Graphs and Parameter Estimation of a Constrained Nonlinear Predictive Model for Oilfield OptimizationH. Lee, K. - T. Yao, A. Nakano
In Proceedings of the 2010 International Conference on Artificial Intelligence
2010BibTex

Compiling for Reconfigurable Computing: A SurveyJ. M. P. Cardoso, P. C. Diniz, M. Weinhardt
In ACM Computing Surveys
2010BibTex

Preprocessing Techniques for Context Recognition from Accelerometer DataD. Figo, P. C. Diniz, D. R. Ferreira, J. M. P. Cardoso
In Personal and Ubiquitous Computing
2010BibTex

Opportunities for concurrent dynamics analysis with explicit inter-core communicationJ. Ha, S. P. Crago
In ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering (PASTE)
2010BibTex

Wings: Intelligent Workflow-Based Design of Computational ExperimentsY. Gil, V. Ratnakar, E. Deelman, et al
In IEEE Intelligent Systems
2010BibTex

Bridging The Gap Between Business And Scientific WorkflowsM. Sonntag, D. Karastoyanova, E. Deelman
In e-Science 2010
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The Application of Cloud Computing to Astronomy: A Study of Cost and PerformanceB. G. Berriman, G. Juve, E. Deelman, M. Regelson, P. Plavchan
In In Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010)
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Mapping Workflows on Grid Resources: Experiments with the Montage WorkflowR. Sakellariou, H. Zhao, E. Deelman
In Grids, P2P and Services Computing
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BPEL4Pegasus: Combining Business and Scientific WorkflowsM. Sonntag, D. Karastoyanova, E. Deelman
In International Conference on Service-Oriented Computing (ICSOC)
2010BibTex

Exploiting the Cloud of Computing Environments: An Application's PerspectiveR. Bolze, E. Deelman
In Cloud Computing and Software Services: Theory and Techniques
2010BibTex

CyberShake: A Physics-Based Seismic Hazard Model for Southern CaliforniaR. Graves, T. Jordan, S. Callaghan, E. Deelman, E. Field, G. Juve, C. Kesselman, P. Maechling, G. Mehta, K. Milner, D. Okaya, P. Small, K. Vahi
In Pure and Applied Geophysics
2010BibTex

Experiences with Resource Provisioning for Scientific Workflows Using CorralG. Juve, E. Deelman, K. Vahi, G. Mehta
In Scientific Programming
2010, 77-92 pagesBibTex

The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their ProvenanceB. G. Berriman, E. Deelman, P. Groth, G. Juve
In SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy
2010BibTex

Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, P. J. Maechling
In 22nd IEEE/ACM Conference on Supercomputing (SC10)
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Scaling up Workflow-based ApplicationsS. Callaghan, E. Deelman, D. Gunter, G. Juve, P. Maechling, C. Brooks, K. Vahi, K. Milner, R. Graves, E. Field, D. Okaya, T. Jordan
In Journal of Computer and System Sciences
2010, 428-446 pagesBibTex

Parameterized Specification, Configuration and Execution of Data-intensive Scientific WorkflowsV. S. Kumar, T. Kurc, V. Ratnakar, J. Kim, G. Mehta, K. Vahi, Y. L. Nelson, P. Sadayappan, E. Deelman, Y. Gil, M. Hall, J. Saltz
In Cluster Computing Journal
2010, 315-333 pagesBibTex

Scientific Workflows and CloudsG. Juve, E. Deelman
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2010, 14-18 pagesBibTex

Scientific Workflows in the CloudG. Juve, E. Deelman
In Grids, Clouds and Virtualization
2010, 71–91 pagesBibTex

Planning to Discover and Counteract Attacks, InformaticaT. Kichkaylo, T. Ryutov, M. Orosz, R. Neches
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�PortSec: A Port Security Risk Analysis and Resources Allocation System, � in Proceedings of the IEEE International Conference on Technologies for Homeland Security http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5655M. D. Orosz, C. Southwell, A. Barrett, J. Chen, P. Ioannou, A. Afshin, I. Maya
2010BibTex

Parameterized specification, configuration and execution of data-intensive scientific workflowsV. S. Kumar, T. M. Kurç, V. Ratnakar, J. Kim, G. Mehta, K. Vahi, Y. -, P. Sadayappan, E. Deelman, Y. Gil, M. W. Hall, J. H. Saltz
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Scientific Workflow Applications on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
In CoRR
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Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
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Scaling up workflow-based applicationsS. Callaghan, E. Deelman, D. Gunter, G. Juve, P. Maechling, C. X. Brooks, K. Vahi, K. Milner, R. Graves, E. Field, D. Okaya, T. H. Jordan
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2010, 428–446 pagesBibTex

Experiences with resource provisioning for scientific workflows using CorralG. Juve, E. Deelman, K. Vahi, G. Mehta
In Scientific Programming
2010, 77–92 pagesBibTex

Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
In Conference on High Performance Computing Networking, Storage and Analysis, SC 2010, New Orleans, LA, USA, November 13-19, 2010
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2009

Real-time support on IEEE 802.11 Wireless Ad-Hoc Networks: Reality vs. TheoryM. Kang, D. - I. Kang, J. Suh
In IEICE Transactions on Communications
2009, 737-744 pagesBibTex

MPI Performance Analysis and Optimization on Tile64/MaestroM. Kang, E. Park, M. Cho, J. Suh, D. - I. Kang, S. P. Crago
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Run-time Monitor (RTM)M. Kang, I. Cho, D. - I. Kang, S. P. Crago, S. Bhatt, I. Choi, X. Yang, M. -ju Wu, D. Yeung
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2009BibTex

AIREN: A Novel Integration of On-Chip and Off-Chip FPGA NetworksA. G. Schmidt, W. V. Kritikos, R. R. Sharma, R. Sass
In Proceedings of the 17th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'09)
2009, 271–274 pagesBibTex

A Hardware Filesystem Implementation with Multi-Disk SupportA. Mendon, A. G. Schmidt, R. Sass
In International Journal of Reconfigurable Computing
2009BibTex

Initial Implementation of a Hardware File System with Multiple Disk SupportA. Mendon, A. G. Schmidt, R. Sass
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Hardware Implementation of MPI_Barrier on an FPGA ClusterS. Gao, A. G. Schmidt, R. Sass
In Proceedings of the 19th Annual Conference on Field Programmable Logic and Applications (FPL'09)
2009, 12-17 pagesBibTex

Replication-Based Fault Tolerance for MPI ApplicationsJ. P. Walters, V. Chaudhary
In Parallel and Distributed Systems, IEEE Transactions on
2009, 997–1010 pagesBibTex

Evaluating the Use of GPUs in Liver Image Segmentation and HMMER Database SearchesJ. P. Walters, V. Balu, S. Kompalli, V. Chaudhary
In Parallel & Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on
2009, 1–12 pagesBibTex

A Fault-Tolerant Strategy for Virtualized HPC ClustersJ. P. Walters, V. Chaudhary
In The Journal of Supercomputing
2009, 209–239 pagesBibTex

Improving MPI-HMMER's Scalability with Parallel I/OJ. P. Walters, R. Darole, V. Chaudhary
In Parallel & Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on
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Data Analysis for Massively Distributed SimulationsK. - T. Yao, R. F. Lucas, C. E. Ward, G. Wagenbreth, T. D. Gottschalck
In Interservice/Industry Training, Simulation, and Education Conference (I/ITSEC) 2009
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Mission-Critical Space Software for Multi-Core ProcessorsS. P. Crago
In Workshop on Flight Software
2009BibTex

Maestro Multi-Core SoftwareS. P. Crago
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Integrated Development Environment and Parallel Performance Analysis Tools for Tile 64/ MaestroK. Singh, R. Kost, K. Yoo, K. Parker, S. P. Crago
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Adaptive Workflow Processing and Execution in PegasusK. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta
In Concurrency and Computation: Practice and Experience
2009, 1965-1981 pagesBibTex

Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed EnvironmentsE. Deelman
In International Journal of High Performance Computing Applications
2009BibTex

Scientific Workflow Applications on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, P. J. Maechling
In Workshop on Cloud-based Services and Applications
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Pipeline-Centric Provenance ModelP. Groth, E. Deelman, G. Juve, G. Mehta, B. Berriman
In 4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09)
2009BibTex

An Integrated Framework for Performance-based Optimization of Scientific WorkflowsV. S. Kumar, P. Sadayappan, G. Mehta, K. Vahi, E. Deelman, V. Ratnakar, J. Kim, Y. Gil, M. W. Hall, T. M. Kurç, J. H. Saltz
In Conference on High Performance and Distributed Computing (HPDC)
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Mapping Workflows on Grid Resources: Experiments with the Montage WorkflowR. Sakellariou, H. Zhao, E. Deelman
In CoreGrid
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�PortSec: Port Security Risk Management and Resources Allocation System, � in Proceedings of the 12th IFAC Symposium on Control in Transportation Systems, (CTS'09), Redondo Beach, CAM. D. Orosz, C. Southwell, A. Barrett, O. Bakir, J. Chen, I. Maya
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An integrated framework for performance-based optimization of scientific workflowsV. S. Kumar, P. Sadayappan, G. Mehta, K. Vahi, E. Deelman, V. Ratnakar, J. Kim, Y. Gil, M. W. Hall, T. M. Kurç, J. H. Saltz
In Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, HPDC 2009, Garching, Germany, June 11-13, 2009
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Building Solutions for Researchers with a Science GatewayJ. McGee, J. Reilly, M. Rynge
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Accelerating Particle Image Velocimetry Using Hybrid ArchitecturesV. Venugopalan, C. D. Patterson, K. A. Shinpaugh
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2009BibTex

2008

Autonomous System on a Chip Adaptation through Partial Runtime ReconfigurationM. C. French, E. Anderson, D. - I. Kang
In Field-Programmable Custom Computing Machines, 2008. FCCM '08. 16th International Symposium on
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System on a Programmable Chip Adapation Through Active Partial ReconfigurationE. Anderson, D. - I. Kang, M. C. French
In The International Conference on Engineering of Reconfigurable Systems and Algorithms
2008BibTex

An Energy-Efficient Real-Time Scheduling Scheme on Dual Channel NetworksM. Kang, D. - I. Kang, J. Suh, J. Lee
In Information Sciences
2008, 2553-2563 pagesBibTex

Teaching FPGA System Design via a Remote Laboratory FacilityY. Rajasekhar, W. V. Kritikos, A. G. Schmidt, R. Sass
In Proceedings of the 18th Annual Conference on Field Programmable Logic and Applications (FPL'08)
2008, 687–690 pagesBibTex

FPGA Session Control (FSC): Providing Remote Access to A Cluster of FPGAsY. Rajasekhar, Y. Phatak, A. G. Schmidt, W. V. Kritikos, R. Sass
In Proceedings of the 16th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'08)
2008, 289–299 pagesBibTex

Reconfigurable Computing Cluster Project: Phase I BriefA. G. Schmidt, W. V. Kritikos, S. Datta, R. Sass
In Proceedings of the 16th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'08)
2008, 300-301 pagesBibTex

A Comparison of Virtualization Technologies for HPCJ. P. Walters, V. Chaudhary, M. Cha, S. Guercio, S. Gallo
In Advanced Information Networking and Applications, 2008. AINA 2008. 22nd International Conference on
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Enabling Interactive Jobs in Virtualized Data CentersJ. P. Walters, B. Bantwal, V. Chaudhary
In Cloud Computing and Its Applications
2008BibTex

Optimized Cluster-Enabled HMMER SearchesJ. P. Walters, J. Landman, V. Chaudhary
In Grid computing for bioinformatics and computational biology
2008, 51–70 pagesBibTex

A High Performance Route-Planning Technique for Dense Urban simulationsJ. J. Tran, K. - T. Yao, G. Wagenbreth, D. M. Davis, R. F. Lucas, D. J. Bakeman
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2008BibTex

Modeling Human Perception of Situation Awareness During Constructive ExperimentationP. Colon, J. Tran, K. - T. Yao, M. Anhalt, J. Curiel
In MSIAC Journal
2008, 20-29 pagesBibTex

Advanaced Microprocessor ArchitecturesJ. McMahon, S. P. Crago, D. Yeung
In High Performance Embedded Computing Hanbook
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Resource Provisioning Options for Large-Scale Scientific WorkflowsG. Juve, E. Deelman
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Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShakeS. Callaghan, P. Maechling, E. Deelman, K. Vahi, G. Mehta, G. Juve, K. Milner, R. Graves, E. Field, D. Okaya, D. Gunter, K. Beattie, T. Jordan
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On the Use of Cloud Computing for Scientific WorkflowsC. Hoffa, G. Mehta, T. Freeman, E. Deelman, K. Keahey, B. Berriman, J. Good
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Characterization of Scientific WorkflowsS. Bharathi, A. Chervenak, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
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Workflows and e-Science: An Overview of Workflow System Features and CapabilitiesE. Deelman, D. Gannon, M. Shields, I. Taylor
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Data Management Challenges of Data-Intensive Scientific WorkflowsE. Deelman, A. Chervenak
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The Cost of Doing Science on the Cloud: The Montage ExampleE. Deelman, G. Singh, M. Livny, B. Berriman, J. Good
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Adaptive Workflow Processing and Execution in PegasusK. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta
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Provenance: The Bridge Between Experiments and DataS. Miles, P. Groth, E. Deelman, K. Vahi, G. Mehta, L. Moreau
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2008, 38-46 pagesBibTex

Workflow Task Clustering for Best Effort Systems with PegasusG. Singh, M. - H. Su, K. Vahi, E. Deelman, B. Berriman, J. Good, D. S. Katz, G. Mehta
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Provenance: The Bridge Between Experiments and DataS. Miles, P. T. Groth, E. Deelman, K. Vahi, G. Mehta, L. Moreau
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Estimating Resource Needs for Time-Constrained WorkflowsE. -, Y. -, E. Deelman, K. Vahi, G. Mehta, J. -
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Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShakeS. Callaghan, P. Maechling, E. Deelman, K. Vahi, G. Mehta, G. Juve, K. Milner, R. Graves, E. Field, D. Okaya, D. Gunter, K. Beattie, T. H. Jordan
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Workflow task clustering for best effort systems with PegasusG. Singh, M. -, K. Vahi, E. Deelman, B. G. Berriman, J. Good, D. S. Katz, G. Mehta
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2007

A Low Power Real-Time Packet Scheduling Scheme on Wireless Local Area NetworksM. Kang, D. - I. Kang, J. Suh, J. Lee
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Design of a reliable real-time scheduling policy for dual-channel networksJ. Lee, M. Kang, G. - L. Park, S. Y. Shin
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Characterizing Effective Memory Bandwidth of Designs with Concurrent High-Performance Computing CoresA. G. Schmidt, R. Sass
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Reconfigurable Computing Cluster (RCC) Project: Investigating the Feasibility of FPGA-Based Petascale ComputingR. Sass, W. V. Kritikos, A. G. Schmidt, S. Beeravolu, P. Beeraka, K. Datta, D. Andrews, R. S. Miller, J. Daniel Stanzione
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Quantifying Effective Memory Bandwidth of Platform FPGAsA. G. Schmidt, R. Sass
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Wireless Sensor Network Security: A SurveyJ. P. Walters, Z. Liang, W. Shi, V. Chaudhary
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MPI-HMMER-Boost: Distributed FPGA AccelerationJ. P. Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B. Schmidt, D. Nathan, J. Landman
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A Scalable Asynchronous Replication-Based Strategy for Fault Tolerant MPI ApplicationsJ. Walters, V. Chaudhary
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Failure Prediction and Scalable Checkpointing for Reliable Large-Scale Grid ComputingB. Rood, J. P. Walters, V. Chaudhary, M. J. Lewis
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Fault-Tolerant Techniques for High Performance Computing and a Bioinformatics ApplicationJ. P. N. Walters
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Modeling Human Perception of Situation Awareness During Constructive ExperimentationP. Colon, M. Anhalt, J. Curiel, K. - T. Yao, J. Tran
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Preliminary Study toward Intelligent Run-time Resource Management Techniques for Large Multi-Core ArchitecturesD. I. Kang, J. Suh, J. O. McMahon, S. P. Crago
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Optimization of Memory Allocation in VSIPLJ. Suh, J. O. McMahon, D. I. Kang, S. P. Crago
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Pegasus: Mapping Large-Scale Workflows to Distributed ResourcesE. Deelman, G. Mehta, G. Singh, M. - H. Su, K. Vahi
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Generating Complex Astronomy WorkflowsB. G. Berriman, E. Deelman, J. Good, J. C. Jacob, D. S. Katz, A. C. Laity, T. A. Prince, G. Singh, M. - H. Su
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SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis CalculationsP. Maechling, E. Deelman, L. Zhao, R. Graves, G. Mehta, N. Gupta, J. Mehringer, C. Kesselman, S. Callaghan, D. Okaya, H. Francoeur, V. Gupta, Y. Cui, K. Vahi, T. Jordan, E. Field
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Examining the Challenges of Scientific WorkflowsY. Gil, E. Deelman, M. Ellisman, T. Fahringer, G. Fox, D. Gannon, C. Goble, M. Livny, L. Moreau, J. Myers
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Connecting Scientific Data to Scientific Experiments with ProvenanceS. Miles, E. Deelman, P. Groth, K. Vahi, G. Mehta, L. Moreau
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Provenance Trails in the Wings/Pegasus Workflow SystemJ. Kim, E. Deelman, Y. Gil, G. Mehta, V. Ratnakar
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Data Placement for Scientific Applications in Distributed EnvironmentsA. Chervenak, E. Deelman, M. Livny, M. - H. Su, R. Schuler, S. Bharathi, G. Mehta, K. Vahi
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Optimizing Workflow Data FootprintG. Singh, K. Vahi, A. Ramakrishnan, G. Mehta, E. Deelman, H. Zhao, R. Sakellariou, K. Blackburn, D. Brown, S. Fairhurst, D. Meyers, B. G. Berriman
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Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational WorkflowsY. Gil, V. Ratnakar, E. Deelman, G. Mehta, J. Kim
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Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus ExampleN. Mandal, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
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Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed ResourcesA. Ramakrishnan, G. Singh, H. Zhao, E. Deelman, R. Sakellariou, K. Vahi, K. Blackburn, D. Meyers, M. Samidi
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�Mixed-initiative planning for space exploration missions, � in Proceedings of the ICAPS�07 Workshop on Moving, Planning and Scheduling, International Conference on Automated Planning and Scheduling, Providence, RIT. Kichkaylo, V. Buskirk, S. C., N. S., O. H., M., R. Neches
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Optimizing workflow data footprintG. Singh, K. Vahi, A. Ramakrishnan, G. Mehta, E. Deelman, H. Zhao, R. Sakellariou, K. Blackburn, D. Brown, S. Fairhurst, D. Meyers, B. G. Berriman, J. Good, D. S. Katz
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Scheduling Data-IntensiveWorkflows onto Storage-Constrained Distributed ResourcesA. Ramakrishnan, G. Singh, H. Zhao, E. Deelman, R. Sakellariou, K. Vahi, K. Blackburn, D. Meyers, M. Samidi
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Connecting Scientific Data to Scientific Experiments with ProvenanceS. Miles, E. Deelman, P. T. Groth, K. Vahi, G. Mehta, L. Moreau
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Data placement for scientific applications in distributed environmentsA. L. Chervenak, E. Deelman, M. Livny, M. -, R. Schuler, S. Bharathi, G. Mehta, K. Vahi
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Integrating existing scientific workflow systems: the Kepler/Pegasus exampleN. Mandal, E. Deelman, G. Mehta, M. -, K. Vahi
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2006

Power Visualization, Analysis, and Optimization Tools for FPGAsM. C. French, L. Wang, M. Wirthlin
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FPGA dynamic power minimization through placement and routing constraintsL. Wang, M. C. French, A. Davoodi, D. Agarwal
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Tolerating SEU Faults in the Raw ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
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An Evaluation of Software Fault Tolerance Techniques on a Tiled ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
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Reducing Power Consumption of Radiation Mitigated Designs for FPGAsM. C. French, L. Wang, M. Wirthlin, P. Graham
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Cross Functional Design Tools for Radiation Mitigation and Power Optimization of FPGA CircuitsM. C. French, P. Graham, M. Wirthlin, G. Larchev, L. Wang
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FPGA dynamic power minimization through placement and routing constraintsL. Wang, M. C. French, A. Davoodi, D. Agarwal
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Tolerating SEU Faults in the Raw ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
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Accelerating the HMMER Sequence Analysis Suite Using Conventional ProcessorsJ. P. Walters, B. Qudah, V. Chaudhary
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Application-Level Checkpointing Techniques for Parallel ProgramsJ. P. Walters, V. Chaudhary
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Accelerating HMMer Searches on Opteron Processors with Minimally Invasive RecodingJ. Landman, J. Ray, J. P. Walters
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An Adaptive Heterogeneous Software DSMJ. P. Walters, H. Jiang, V. Chaudhary
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Data Conversion for Heterogeneous Migration/CheckpointingH. Jiang, V. Chaudhary, J. P. Walters
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Mega-scale fabrication by contour craftingB. Khoshnevis, D. Hwang, K. - T. Yao, Z. Yeh
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Supercomputing's Role in Data Problems and Its Contribution to SolutionsK. - T. Yao, D. Davis, R. Lucas, P. Amburn
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Agile Data Logging and Analysis for Large-Scale SimulationsK. - T. Yao, G. Wagenbreth, C. Ward
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Design and Evaluation of Hierarchical Decoupled ArchitectureW. W. Ro, S. P. Crago, A. M. Despain, J. L. Gaudiot
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CEARCH: Cognition Enabled ArchitectureS. P. Crago, J. O. McMahon, C. Archer, K. Asanovic, R. Chaung, K. Goolsbey, M. Hall, C. Kozyrakis, K. Olukotun, U. J. OÕReilly, Pancoast, V. Prasanna, R. Rabbah, S. Ward, D. Yeung
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Workflows for e-ScienceI. Taylor, E. Deelman, D. Gannon, M. Shield
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Kickstarting Remote ApplicationsJ. - S. Vöckler, G. Mehta, Y. Zhao, E. Deelman, M. Wilde
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Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and ChallengesE. Deelman, Y. Gil
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Application-level Resource Provisioning on the GridG. Singh, C. Kesselman, E. Deelman
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Enabling Parallel Scientific Applications with Workflow ToolsA. Lathers, M. - H. Su, A. Kulungowski, A. W. Lin, G. Mehta, S. T. Peltier, E. Deelman, M. H. Ellisman
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Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake ExampleE. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, L. Zhao
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Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data SystemV. Nefedova, R. Jacob, I. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
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�Tracking Logistical Constraints Across Missions and Organizations: A Multipurpose Information Infrastructure, � in Proceedings of 2nd Annual IEEE Conference on Space Mission Challenges for Information Technologies (SMC-IT 2006), Pasadena, CA, 17-20M. Orosz, T. Kichkaylo, E. Balaban, A. Goforth, A. Sweet, R. Neches
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�Planning to Explore: Using a Coordinated Multisource Infrastructure to Overcome Present and Future Space Flight Planning Challenges, � in Proceedings of AAAI 2006 Spring Symposium on Distributed Plan and Schedule Management, Technical Report SS-06-04E. Balaban, M. Orosz, T. Kichkaylo, A. Goforth, A. Sweet, R. Neches
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Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance Tracking: The CyberShake ExampleE. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, L. Zhao
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Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data SystemV. Nefedova, R. L. Jacob, I. T. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M. -, K. Vahi
In Second International Conference on e-Science and Grid Technologies (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands
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Pegasus and DAGMan From Concept to Execution: Mapping Scientific Workflows onto Today's CyberinfrastructureE. Deelman, M. Livny, G. Mehta, A. Pavlo, G. Singh, M. -, K. Vahi, K. R. Wenger
In High Performance Computing and Grids in Action - Selected Papers from the 2006 International Advanced Research Workshop on High Performance Computing and Grids, Cetraro, Italy, 2006.
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The Eight-Meter-Wavelength Transient Array (ETA)J. H. Simonetti, S. W. Ellingson, C. D. Patterson, W. Taylor, V. Venugopalan, S. Cutchin, Z. Boor
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2005

Post Synthesis Level Power Modeling of FPGAsM. C. French, L. Wang, T. Anderson, M. Wirthlin
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Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen
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Integrated Tool Suite for Post Synthesis FPGA Power Consumption AnalysisM. C. French, L. Wang, M. Wirthlin
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Radiation Mitigation and Power Optimization Design Tools for Reconfigurable Hardware in OrbitM. C. French, P. Graham, M. Wirthlin, G. Larchev, L. Wang
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Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen
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Simulation Data Grid: Joint Experimentation Data Management and AnalysisK. - T. Yao, G. Wagenbreth
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Developing Situation Awareness Metrics in a Synthetic Battlespace EnvironmentJ. M. Curiel, M. D. Anhalt, J. J. Tran, K. - T. Yao
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Enabling 1,000,000-Entity Simulation on Distributed Linux ClustersG. Wagenbreth, K. - T. Yao, D. M. Davis, R. F. Lucas, T. D. Gottschalk
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The Road to Successful Joint Experimentation Starts at the Data Collection Trail - Part IIR. J. Graebener, G. Rafuse, R. Miller, K. - T. Yao
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A Register Allocation Algorithm in the Presence of Scalar Replacement for Fine-Grain Configurable ArchitectureN. Baradaran, P. C. Diniz
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Implementations of Signal Processing Kernel using Stream Virtual Machine for Raw ProcessorsJ. Suh, S. P. Crago, D. I. Kang, J. O. McMahon
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Implementation of an Embedded DoD VSIPL Application on the SARPA Polymorphous Computing Architecture (PCA) Raw ProcessorJ. Cook, S. P. Crago, L. Morda, R. Pancoast, J. Suh
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Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen, D. P. Campbell
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Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed SystemsE. Deelman, G. Singh, M. - H. Su, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, B. G. Berriman, J. Good, A. Laity, J. C. Jacob, D. S. Katz
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Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling EnvironmentP. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C. Kesselman, J. Kim, G. Mehta, B. Mendenhall, T. A. Russ, G. Singh, M. Spraragen, G. Staples, K. Vahi
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Task Scheduling Strategies for Workflow-based Applications in GridsJ. Blythe, S. Jain, E. Deelman, Y. Gil, K. Vahi, A. Mandal, K. Kennedy
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Optimizing Grid-Based Workflow ExecutionG. Singh, C. Kesselman, E. Deelman
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The Pegasus Portal: Web Based Grid ComputingG. Singh, E. Deelman, G. Mehta, K. Vahi, M. - H. Su, B. G. Berriman, J. Good, J. C. Jacob, D. S. Katz, A. Lazzarini, K. Blackburn, S. Koranda
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Comparison of Two Methods for Building Astronomical Image Mosaics on a GridD. S. Katz, J. C. Jacob, B. G. Berriman, J. Good, A. C. Laity, E. Deelman, C. Kesselman, G. Singh, M. - H. Su, T. A. Prince
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�Attaining program affordability through integration of logistical operations and health maintenance, � in Proceedings of 2005 AIAA 1st Space Exploration Conference: Continuing the Voyage of Discovery, OrlandoA. Goforth, G. Karsai, M. Orosz, R. Neches, P. Szekely, N. Ashish
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Pegasus: A framework for mapping complex scientific workflows onto distributed systemsE. Deelman, G. Singh, M. -, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, B. G. Berriman, J. Good, A. C. Laity, J. C. Jacob, D. S. Katz
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Performance Prediction-based versus Load-based Site Selection: Quantifying the DifferenceS. -, V. E. Taylor, X. Wu, M. Prajugo, E. Deelman, G. Mehta, K. Vahi
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Task scheduling strategies for workflow-based applications in gridsJ. Blythe, S. Jain, E. Deelman, Y. Gil, K. Vahi, A. Mandal, K. Kennedy
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The Pegasus portal: web based grid computingG. Singh, E. Deelman, G. Mehta, K. Vahi, M. -, B. G. Berriman, J. Good, J. C. Jacob, D. S. Katz, A. Lazzarini, K. Blackburn, S. Koranda
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Embedding community-specific resource managers in general-purpose grid infrastructureI. Foster, K. Keahey, C. Kesselman, E. Laure, M. Livny, S. Martin, M. Rynge, G. Singh
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High Speed Digital Filter Design Using Minimal Signed Digit RepresentationK. H. Abed, V. Venugopalan, S. B. Nerurkar
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Design and Implementation of a Decimation Filter for Hearing Aid ApplicationsV. Venugopalan, K. H. Abed, S. B. Nerurkar
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2004

A Power Efficient Image Convolution Engine for Field Programmable Gate ArraysM. C. French
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Design Tools for Reconfigurable Hardware in Orbit (RHinO)M. C. French, P. Graham, M. Wirthlin, G. Larchev, P. Bellows
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Novel Signal Processing Architectures for Knowledge-based STAP Algorithms)M. C. French, J. Suh, S. P. Crago
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A Power Efficient Image Convolution Engine for Field Programmable Gate ArraysM. C. French
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Design Tools for Reconfigurable Hardware in Orbit (RHinO)M. C. French, P. Graham, M. Wirthlin, G. Larchev, P. Bellows
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The Road to Successful Joint Experimentation Starts at the Data Collection Trail - Part IIR. J. Graebener, G. Rafuse, R. Miller, K. - T. Yao
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An interdisciplinary approach to the study of battlefield simulation systemsJ. J. Tran, J. M. Curiel, K. - T. Yao
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Extending the Applicability of Scalar Replacement to Multiple Induction VariablesN. Baradaran, P. Diniz, J. Park
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Compiler Reuse Analysis for the Mapping of Data in FPGAs with RAM BlocksN. Baradaran, P. Diniz, J. Park
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Novel Signal Processing Architectures for Knowledge-based STAP AlgorithmsM. C. French, J. Suh, S. P. Crago, J. Damoulakis
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Artificial Intelligence and Grids: Workflow Planning and BeyondY. Gil, E. Deelman, J. Blythe, C. Kesselman, H. Tangmurarunkit
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Pegasus: Mapping Scientific Workflows onto the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. - H. Su, K. Vahi, M. Livny
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Pegasus: Mapping Scientific Workflows onto the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. -, K. Vahi, M. Livny
In Grid Computing, Second European Across Grids Conference, AxGrids 2004, Nicosia, Cyprus, January 28-30, 2004, Revised Papers
2004, 11–20 pagesBibTex

2003

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In Proceedings of the 30th annual international symposium on Computer architecture
2003, 410–421 pagesBibTex

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In SIGARCH Comput. Archit. News
2003, 410–421 pagesBibTex

Applications of adaptive computing systems for signal processing challengesB. Schott, P. Bellows, M. C. French, R. Parker
In Proceedings of the 2003 Asia and South Pacific Design Automation Conference
2003, 465–470 pagesBibTex

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In SIGARCH Comput. Archit. News
2003, 410–421 pagesBibTex

Data Conversion for Process/Thread Migration and CheckpointingH. Jiang, V. Chaudhary, J. P. Walters
In Parallel Processing, 2003. Proceedings. 2003 International Conference on
2003, 473–480 pagesBibTex

The Road to Successful Joint Experimentation Starts at the Data Collection TrailR. J. Graebener, G. Rafuse, R. Miller, K. - T. Yao
In Interservice/Industry Training, Simulation, and Education Conference (I/ITSEC) 2003
2003BibTex

Data Search and Reorganization using FPGAs: Application to Spatial Pointer-based Data StructuresP. Diniz, J. Park
2003BibTex

Synthesis and Estimation of Memory Interfaces for FPGA-based Reconfigurable Computing EnginesJ. Park, P. Diniz
In FCCM2003
2003BibTex

A Compiler Apporach to Performance Prediction using Emprical-based ModelingP. Diniz, J. Park
In In Proc. of the 2003 Workshop on Performance Modeling and Analysis (PMA'03), published as Lecture Notes on Computer Science (LNCS 2659)
2003, 916-925 pagesBibTex

Increasing the Accuracy of Shape and Safety Analysis for Pointer-based CodesP. Diniz
2003BibTex

Dynamic Power Management of Heterogeneous SystemsJ. Suh, D. Kang, S. P. Crago
In Eleventh International Workshop on Parallel and Distributed Real-Time Systems (WPDRTS) in conjunction with IPDPS
2003BibTex

A Performance Analysis of PIM, Stream Processing and Tiled Processing on Memory-Intensive Signal Processing KernelsJ. Suh, E. G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In ISCA03
2003BibTex

Robust Highly-Connected Direct Interconnection Network TopologiesI. Sharapov, G. Lauterbach, S. P. Crago
In International Conference on Parallel and Distributed Processing Techniques and Applications
2003BibTex

A Performance Characterization of New Microprocessor paradigm on Data-Intensive KernelsJ. Suh, E. G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In Workshop on Performance Characterization, Modeling, and Benchmarking for HPC Systems
2003BibTex

HiDISC: a decoupled architecture for data-intensive applicationsW. W. Ro, J. L. Gaudiot, S. P. Crago, A. M. Despain
In International Parallel and Distributed Processing Symposium
2003BibTex

System Architecture Issues for Polymorphous ComputingS. P. Crago, J. Suh, C. Chen, D. Kang, E. Kim
In 28th Annual GOMACTech Conference
2003BibTex

Pegasus and the Pulsar Search: From Metadata to Execution on the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, S. Koranda, A. Lazzarini, G. Mehta, M. A. Papa, K. Vahi
In Applications Grid Workshop, PPAM 2003
2003BibTex

Workflow Management in GriPhyNE. Deelman, J. Blythe, Y. Gil, C. Kesselman
In Grid Resource Management
2003BibTex

Mapping Abstract Complex Workflows onto Grid EnvironmentsE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A. Arbree, R. Cavanaugh, S. Koranda
In Journal of Grid Computing
2003, 25-39 pagesBibTex

Transparent Grid Computing: a Knowledge-Based ApproachJ. Blythe, E. Deelman, Y. Gil, C. Kesselman
In IAAI
2003BibTex

The Role of Planning in Grid ComputingJ. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, K. Vahi
In ICAPS
2003BibTex

Planning for workflow construction and maintenance on the GridJ. Blythe, E. Deelman, Y. Gil
In 2003 ICAPS Workshop on Planning for Web Services
2003BibTex

From Metadata to Execution on the Grid Pegasus and the Pulsar SearchE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, S. Koranda, A. Lazzarini, M. A. Papa
2003BibTex

Montage: A Grid Enabled Image Mosaic Service for the National Virtual ObservatoryB. G. Berriman, J. C. Good, A. C. Laity, A. Bergou, J. C. Jacob, D. S. Katz, E. Deelman, C. Kesselman, G. Singh, M. - H. Su, R. Williams
In ADASS XIII
2003BibTex

Montage on the GridG. Singh, E. Deelman
2003BibTex

Multi-Wavelength Image Space: Another Grid-Enabled ScienceR. Williams, B. G. Berriman, E. Deelman, J. Good, J. C. Jacob, C. Kesselman, C. Lonsdale, S. Oliver, T. A. Prince
In Journal of Concurrency and Computation: Practice and Experience
2003BibTex

Overall Architecture and Control FlowE. Deelman, I. Foster, C. Kesselman, R. Moore, S. Ranka
2003BibTex

Types of Editors and SpecificationsJ. Blythe, R. Cavanaugh, E. Deelman, I. Foster, S. - H. Jang, C. Kesselman, K. Marzullo, R. Moore, V. Taylor, X. Zhang
2003BibTex

The Role of Planning in Grid ComputingJ. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, K. Vahi
In Proceedings of the Thirteenth International Conference on Automated Planning and Scheduling (ICAPS 2003), June 9-13, 2003, Trento, Italy
2003, 153–163 pagesBibTex

Pegasus and the Pulsar Search: From Metadata to Execution on the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, S. Koranda, A. Lazzarini, G. Mehta, M. A. Papa, K. Vahi
In Parallel Processing and Applied Mathematics, 5th International Conference, PPAM 2003, Czestochowa, Poland, September 7-10, 2003. Revised Papers
2003, 821–830 pagesBibTex

2002

Dynamic coordination of information management services for processing dynamic web contentI. - Y. Ko, K. - T. Yao, R. Neches
In Proceedings of the Eleventh International World Wide Web Conference, WWW2002
2002, 355-365 pagesBibTex

Coarse-grain Pipelining for Multiple FPGA ArchitecturesH. Ziegler, B. So, M. Hall, P. Diniz
2002, 77–86 pagesBibTex

Data Reorganizaion Engines for the Next Generation of System-On-A-Chip FPGAsP. Diniz, J. Park
2002, 237–244 pagesBibTex

A Compiler Approach to Fast Design Space Exploration for FPGA SystemsB. So, M. Hall, P. Diniz
2002, 00–00 pagesBibTex

Selector: A Language Construct for Developing Dynamic ApplicationsP. Diniz, B. Liu
2002, 570-578 pagesBibTex

A Power-Aware, Satellite-Based Parallel Signal Processing SchemeP. M. Shriver, M. B. Gokhale, S. D. Briles, D. I. Kang, M. Cai, K. McCabe, S. P. Crago, J. Suh
In Power Aware Computing, Series in Computer Science, Kluwer Academic/Plenum Publishers
2002BibTex

VLSI in Computers and ProcessorsB. Serebrin, J. D. Owens, C. H. Chen, S. P. Crago, U. J. Kapasi, B. Khailany, P. Mattson, J. Namkoong, S. Rixner, W. J. Dally
In IEEE International Conference on Computer Design: VLSI in Computers and Processors
2002BibTex

DARPA Data Intensive Systems (DIS) Embedded Computing Benchmarks for Critical Defense Signal Processing ApplicationsS. Shank, S. P. Crago, R. Pancoast, J. Racosky, J. Suh, L. Trevito
In 6th Annual High Performance Embedded Computing Workshop
2002BibTex

An Optimal Voltage Synthesis Technique for a Power-Efficient Satellite ApplicationD. Kang, J. Suh, S. P. Crago
In 39th Design Automation Conference (DAC)
2002BibTex

Dynamic Power Management of Multiprocessor SystemsJ. Suh, D. Kang, S. P. Crago
In Tenth International Workshop on Parallel and Distributed Real-Time Systems (WPDRTS) in conjunction with IPDPS
2002BibTex

GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave ScientistsE. Deelman, C. Kesselman, G. Mehta, L. Meshkat, L. Pearlman, K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, S. Koranda
In High Performance Distributed Computing (HPDC)
2002BibTex

Pegasus: Planning for Execution in GridsE. Deelman, J. Blythe, Y. Gil, C. Kesselman
2002BibTex

�Intelligibility of speech in a virtual 3D environment: optimal design of auditory information displays�, Journal of Human Factors ResearchJ. MacDonald, J. D. Balakrishnan, M. D. Orosz, W. J. Karplus
2002BibTex

Hardware Efficient Narrow Band FIR FilterV. Venugopalan, K. H. Abed, R. E. Siferd, S. Nerurkar
In The 45th Midwest Symposium on Circuits and Systems, (MWSCAS-2002)
2002, 223-226 pagesBibTex

Low Power Sigma Delta Decimation FilterS. B. Nerurkar, K. H. Abed, R. E. Siferd, V. Venugopalan
In The 45th Midwest Symposium on Circuits and Systems, (MWSCAS-2002)
2002, I–647-50 vol.1 pagesBibTex

2001

Semantic Interoperability Scripting and MeasurementsK. - T. Yao, I. - Y. Ko, R. Neches, R. MacGregor
In Working Conference on Complex and Dynamic Systems Architecture
2001BibTex

A Semantic Model and Composition Mechanism for Active Document Collection Templates in Web-based Information Management SystemsI. - Y. Ko, R. Neches, K. - T. Yao
In Electronic Transactions on Artificial Intelligence (ETAI)
2001, 55-71 pagesBibTex

GeoWorlds: Integrating GIS and Digital Libraries for Situation Understanding and ManagementR. Neches, K. - T. Yao, I. - Y. Ko, A. Bugacov, V. Kumar, R. Eleish
In The New Review of Hypermedia and Multimedia (NRHM)
2001, 127-152 pagesBibTex

Matching and Searching Analysis for Parallel Hardware Implementation on FPGAsP. Moisset, P. Diniz, J. Park
2001, 125–133 pagesBibTex

A Behavioral Synthesis Estimation Interface for Configurable ComputingP. Diniz, A. Venkatachar
2001, 00–00 pagesBibTex

An External Memory Interface for FPGA-based Computing EnginesJ. Park, P. Diniz
In FCCM2001
2001, 00–00 pagesBibTex

Synthesis of Memory Access Controller for Streamed Data Applications for FPGA-based Computing EnginesJ. Park, P. Diniz
In Proc. 14th International Symposium on System Synthesis (ISSS'01)
2001, 221–226 pagesBibTex

Bridging the Gap between Compilation and Behavioral Synthesis in the DEFACTO SystemP. Diniz, M. Hall, J. Park, B. So, H. Ziegler
2001BibTex

Implementations of Real-time Data Intensive Applications on PIM-based Multiprocessor SystemsJ. Suh, M. Zhu, C. Li, S. P. Crago, S. F. Shank, R. H. Chau, W. J. Mazur, R. Pancoast
In Joint WPDRTS and EHPC 01
2001BibTex

PIM- and Stream Processor-based Processing for Radar Signal ApplicationsJ. Suh, S. P. Crago
In The Third Workshop on Media and Streaming Processors in conjunction with The 34th International Symposium on Microarchitecture
2001BibTex

PIM- and Stream Processor-Based SystemJ. Suh, S. P. Crago, C. Li, R. Parker
In Fifth Annual High Performance Embedded Computing Workshop
2001BibTex

Efficient Algorithms for Fixed-Point Arithmetic Operations In An Embedded PIMJ. Suh, D. Kang, S. P. Crago
In SCI 01
2001BibTex

Power-Aware Design Synthesis Techniques for Distributed Real-Time SystemsD. Kang, S. P. Crago, J. Suh
In ACM Workshop on Languages, Compilers, and Tools for Embedded Systems (LCTES) '01
2001BibTex

A PIM-Based MultiprocessorJ. Suh, C. Li, S. P. Crago, R. Parker
In IPDPS 01
2001BibTex

2000

Asynchronous information space analysis architecture using content and structure-based service brokeringK. - T. Yao, I. - Y. Ko, R. Eleish, R. Neches
In Proceedings of the Fifth ACM Conference on Digital Libraries
2000, 133-142 pagesBibTex

Semantically-Based Active Document Collection Templates for Web Information Management SystemsI. - Y. Ko, R. Neches, K. - T. Yao
In Proceedings of the International Workshop on the Semantic Web
2000BibTex

Automatic Synthesis of Data Storage and Contol Structures for FPGA-based Computing EnginesP. Diniz, J. Park
2000, 91–100 pagesBibTex

A High-Performance, Hierarchical Decoupled ArchitectureS. P. Crago, A. Despain, J. L. Gaudiot, M. Makhija, W. Ro, A. Srivastava
In MEmory access DEcoupling for superscalar and multiple issue Architectures (MEDEA) Workshop
2000BibTex

Distributed Corner Turn on a PIM-Based MultiprocessorJ. Suh, S. P. Crago, C. Li, R. Parker
In Fourth Annual Workshop on High Performance Embedded Computing (HPEC)
2000BibTex

Efficient Communication Algorithm for Multiple FPGA SystemsJ. Suh, D. Kang, S. P. Crago
In IEEE Symposium on Field Programmable Custom Computing Machines (FCCM) 2000
2000BibTex

�Using virtual 3-D audio in multi-speech channel and multimedia environments, � in Cockpit Display VII: Displays for Defense ApplicationsM. D. Orosz, W. J. Karplus, J. D. Balakrishnan
In Proceedings of SPIE
2000BibTex

�A test bed for prototyping human/computer interfaces used in mission critical environments, � in Proceedings of 1st Annual IEEE International Conference on Multimedia and Expo (ICME2000), New York, NYM. D. Orosz, W. J. Karplus, J. D. Balakrishnan
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2000BibTex

1999

Architectures for System-Level Applications of Adaptive ComputingB. Schott, C. Chen, S. P. Crago, J. Czarnaski, M. C. French, I. Hom, T. Tho, T. Valenti
In FCCM
1999, 270-27 pagesBibTex

Architectures for System-Level Applications of Adaptive ComputingB. Schott, C. Chen, S. P. Crago, J. Czarnaski, M. C. French, I. Hom, T. Tho, T. Valenti
In Proceedings of the Seventh Annual IEEE Symposium on Field-Programmable Custom Computing Machines
1999, 270– pagesBibTex

Synchronous and Asynchronous Collaborative Information Space Analysis ToolsK. - T. Yao, R. Neches, I. - Y. Ko, R. Eleish, S. and Abhinkar
In Proceedings of the International Workshop on Collaboration and Mobile Computing (CMC 99)
1999BibTex

GeoWorlds: A Geographically Based Situation Understanding and Information Management System for Disaster Relief OperationsM. Coutinho, R. Neches, A. Bugacov, V. Kumar, K. - T. Yao, I. - Y. Ko, R. Eleish, S. Abhinkar
In 5th International Conference on Information Systems, Analysis and Synthesis (ISAS 99)
1999BibTex

GeoWorlds: A Geographically Based Information System for Situation Understanding and ManagementM. Coutinho, R. Neches, A. Bugacov, V. Kumar, K. - T. Yao, I. - Y. Ko, R. Eleish, S. Abhinkar
In First International Workshop on TeleGeoProcessing (TeleGeo 99)
1999BibTex

Eliminating Synchronization Bottlenecks in Object-Based Programs Using Adaptive ReplicationM. Rinard, P. Diniz
1999, 83–92 pagesBibTex

�A methodology for developing and controlling human/computer interfacesM. D. Orosz
1999BibTex

1998

Collaborative Information Space Analysis ToolsR. Neches, S. Abhinkar, F. Hu, R. Eleish, I. - Y. Ko, K. - T. Yao, Q. Zhu, P. Will
In D-Lib Magazine
1998BibTex

Lock Coarsening: Eliminating Lock Overhead in Automatically Parallelized Object-Based ProgramsP. Diniz, M. Rinard
1998, 2218–244 pagesBibTex

A Hierarchical Decoupled Instruction Stream ArchitectureS. P. Crago
In Ph.D. Thesis
1998BibTex

SLAAC: A Distributed Architecture for Adaptive ComputingS. P. Crago, B. Schott, R. Parker
In IEEE Symposium on FPGAs for Custom Computing Machines
1998BibTex

1997

Multi-level Modeling for Engineering Design OptimizationT. Ellman, J. Keane, M. Schwabacher, K. - T. Yao
In AI EDAM
1997BibTex

Searching for Parts and Services on the WebQ. Zhu, F. Hu, K. - T. Yao, P. Will
In Proceedings of the International Symposium on Research, Development and Practice in Digital Libraries (ISDL '97)
1997BibTex

Commutativity Analysis: A New Analysis Technique for Parallelizing CompilersM. Rinard, P. Diniz
1997, 942–991 pagesBibTex

Synchronization Transformations for Parallel ComputingP. Diniz, M. Rinard
1997, 187–199 pagesBibTex

Dynamic Feedback: An Effective Technique for Adaptive ComputingP. Diniz, M. Rinard
1997, 71–84 pagesBibTex

HiDISC: A Decoupled Architecture for the FutureS. P. Crago, A. M. Despain
In ACAL-TR-97-01
1997BibTex