Selected Publications

This form enables you to search through publications from CS&T researchers.

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2018

Collaborative Circuit Designs using the CRAFT RepositoryA. Brinckman, E. Deelman, S. Gupta, J. Nabrzyski, S. Park, R. F. da Silva, Taylor, K. Vahi
In Future Generation Computer Systems
2018BibTex

A Job Sizing Strategy for High-Throughput Scientific WorkflowsB. Tovar, R. F. da Silva, G. Juve, E. Deelman, W. Allcock, D. Thain, M. Livny
In IEEE Transactions on Parallel and Distributed Systems
2018, 240–253 pagesBibTex

Improved Metrics for Obfuscated ICsF. M. Zhu, P. Beerel
In Government Microcircuit Applications and Critical Technology Conference
2018BibTex

Hot & Spicy: Improving Productivity with Python and HLS for FPGAsM. J. S. A. G. Skalicky, M. C. French
In IEEE International Symposium on Field Customizeable Computing Machines
2018BibTex

CyberShake Models of Seismic Hazards in Southern and Central CaliforniaT. H. Jordan, S. Callaghan, R. W. Graves, F. Wang, K. R. Milner, C. A. Goulet, P. J. Maechling, K. B. Olsen, Y. Cui, G. Juve, K. Vahi, J. Yu, E. Deelman, D. Gill
In Seismological Research Letters
2018, 875–876 pagesBibTex

CyberShake Models of Seismic Hazards in Southern and Central CaliforniaT. H. Jordan, S. Callaghan, R. W. Graves, F. Wang, K. R. Milner, C. A. Goulet, P. J. Maechling, K. B. Olsen, Y. Cui, G. Juve, K. Vahi, J. Yu, E. Deelman, D. Gill
In 11th National Conference in Earthquake Engineering
2018BibTex

WRENCH: Workflow Management System Simulation WorkbenchH. Casanova, S. Pandey, J. Oeth, R. Tanaka, F. Suter, R. F. da Silva
In 13th Workshop on Workflows in Support of Large-Scale Science (WORKS'18)
2018BibTex

Event-Based Triggering and Management of Scientific Workflow EnsemblesS. Pandey, K. Vahi, R. F. da Silva, E. Deelman, M. Jian, C. Harrison, A. Chu, H. Casanova
2018BibTex

Searching the Sequence Read Archive Using Jetstream and WranglerK. Levi, M. Rynge, E. Abeysinghe, R. A. Edwards
In Proceedings of the Practice and Experience on Advanced Research Computing
2018, 50:1–50:7 pagesBibTex

Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations Through OSG InfrastructureS. Thapa, R. W. Gardner, K. Herner, D. Hufnagel, D. Lesny, M. Rynge
In Proceedings of the Practice and Experience on Advanced Research Computing
2018, 15:1–15:7 pagesBibTex

IoT-Hub: New IoT data-platform for Virtual Research EnvironmentsR. Filgueira, R. F. da Silva, E. Deelman, V. Christodoulou, A. Krause
In 10th International Workshop on Science Gateways (IWSG 2018)
2018BibTex

Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model ExecutionR. F. da Silva, D. Garijo, S. Peckham, Y. Gil, E. Deelman, V. Ratnakar
In 9th International Congress on Environmental Modelling and Software
2018BibTex

MINT: Model Integration Through Knowledge-Powered Data and Process CompositionY. Gil, K. Cobourn, E. Deelman, C. Duffy, R. F. da Silva, A. Kemanian, C. Knoblock, V. Kumar, S. Peckham, L. Carvalho, Y. - Y. Chiang, D. Garijo, D. Khider, A. Khandelwal, M. Pahm, J. Pujara, V. Ratnakar, M. Stoica, B. Vu
In 9th International Congress on Environmental Modelling and Software
2018BibTex

The future of scientific workflowsE. Deelman, T. Peterka, I. Altintas, C. D. Carothers, K. K. van Dam, K. Moreland, M. Parashar, L. Ramakrishnan, M. Taufer, J. Vetter
In The International Journal of High Performance Computing Applications
2018, 159–175 pagesBibTex

2017

OSG-KINC: High-throughput gene co-expression network construction using the open science gridW. L. Poehlman, M. Rynge, D. Balamurugan, N. Mills, F. A. Feltus
In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2017, 1827-1831 pagesBibTex

The OSG Open Facility: an on-ramp for opportunistic scientific computingB. Jayatilaka, T. Levshina, C. Sehgal, R. Gardner, M. Rynge, F. Wurthwein
In Journal of Physics: Conference Series
2017, 082048 pagesBibTex

A Comparison of System Performance on a Private OpenStack Cloud and Amazon EC2M. Kang, D. - I. Kang, J. P. Walters, S. P. Crago
In 10th IEEE International Conference on Cloud Computing (IEEE Cloud)
2017BibTex

Software architectures to integrate workflow engines in science gatewaysT. Glatard, M. - E. Rousseau, S. Camarasu-Pop, R. Adalat, N. Beck, S. Das, R. F. da Silva, N. Khalili-Mahani, V. Korkhov, P. - O. Quirion, P. Rioux, S. D. Olabarriaga, P. Bellec, A. C. Evans
In Future Generation Computer Systems
2017BibTex

A Characterization of Workflow Management Systems for Extreme-Scale ApplicationsR. F. da Silva, R. Filgueira, I. Pietri, M. Jiang, R. Sakellariou, E. Deelman
In Future Generation Computer Systems
2017BibTex

PANORAMA: An Approach to Performance Modeling and Diagnosis of Extreme Scale WorkflowsE. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, R. F. da Silva
In International Journal of High Performance Computing Applications
2017, 4–18 pagesBibTex

Upper Limits on Gravitational Waves from Scorpius X-1 from a Model-Based Cross-Correlation Search in Advanced LIGO DataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1706.03119
2017BibTex

Towards Continuous Scientific Data Analysis and Hypothesis EvolutionY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, A. Srivastava, P. Mallick
2017BibTex

Dynamically Improving Resiliency to Timing Errors for Stream Processing WorkloadsG. P. C. Tran, J. P. Walters, S. P. Crago
In The 18th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT’17)
2017BibTex

Load Balancing for Minimizing Deadline Misses and Total Runtime for Connected Car System in Fog ComputingY. - A. Chen, J. P. Walters, S. P. Crago
In 15th International Symposium on Parallel and Distributed Processing with Applications (ISPA 2017)
2017BibTex

Reproducibility of Execution Environments in Computational Science Using Semantics and CloudsI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In Future Generation Computer Systems
2017, 354–367 pagesBibTex

SpaceCubeX: A Framework for Evaluating Hybrid Multi-Core CPU FPGA DSP ArchitecturesA. G. Schmidt, G. Weisz, M. C. French, T. Flatley, C. Y. Villalpando
In IEEE Aerospace Conference
2017BibTex

GW170104: Observation of a 50-Solar-Mass Binary Black Hole Coalescence at Redshift 0.2B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1706.01812
2017BibTex

All-sky Search for Periodic Gravitational Waves in the O1 LIGO DataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1707.02667
2017BibTex

First low-frequency Einstein@ Home all-sky search for continuous gravitational waves in Advanced LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1707.02669
2017BibTex

Search for gravitational waves from Scorpius X-1 in the first Advanced LIGO observing run with a hidden Markov modelB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1704.03719
2017BibTex

Search for intermediate mass black hole binaries in the first observing run of Advanced LIGOB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In arXiv preprint arXiv:1704.04628
2017BibTex

Accelerating Circuit Realization via a Collaborative Gateway of InnovationsI. J. Taylor, A. Brinckman, E. Deelman, R. F. da Silva, S. Gupta, J. Nabrzyski, S. Park, K. Vahi
In 9th International Workshop on Science Gateways (IWSG 2017)
2017BibTex

Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined ExchangesA. Mandal, P. Ruth, I. Baldin, R. F. da Silva, E. Deelman
In First International Workshop on Workflow Science (WoWS 2017)
2017BibTex

Distributed Workflows for Modeling Experimental DataV. Lynch, J. B. Calvo, E. Deelman, R. F. da Silva, M. Goswami, Y. Hui, E. Lingerfelt, J. Vetter
In 2017 IEEE High Performance Extreme Computing Conference (HPEC'17)
2017BibTex

Reproducibility of execution environments in computational science using Semantics and CloudsI. S. Pérez, R. F. da Silva, M. Rynge, E. Deelman, M. {\'ı}a P. S. -, Ó. Corcho
In Future Generation Comp. Syst.
2017, 354–367 pagesBibTex

On the Use of Burst Buffers for Accelerating Data-Intensive Scientific WorkflowsR. F. da Silva, S. Callaghan, E. Deelman
In 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17)
2017BibTex

rvGAHP - Push-based Job Submission using Reverse SSH ConnectionsS. Callaghan, G. Juve, K. Vahi, P. J. Maechling, T. H. Jordan, E. Deelman
In 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17)
2017BibTex

All-sky search for periodic gravitational waves in the O1 LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In Physical Review D
2017, 062002 pagesBibTex

GW170104: observation of a 50-solar-mass binary black hole coalescence at redshift 0.2L. I. G. O. Scientific, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, others
In Physical Review Letters
2017, 221101 pagesBibTex

Upper limits on gravitational waves from Scorpius X-1 from a model-based cross-correlation search in Advanced LIGO dataB. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, others
In The Astrophysical Journal
2017, 47 pagesBibTex

Advantages of Unfair Quantum Ground-State SamplingB. H. Zhang, G. Wagenbreth, V. Martin-Mayor, I. Hen
In Scientific Reports
2017, 1044 pagesBibTex

Realizable quantum adiabatic searchI. Hen
In EPL (Europhysics Letters)
2017, 30003 pagesBibTex

Solving spin glasses with optimized trees of clustered spinsI. Hen
In Phys. Rev. E
2017, 022105 pagesBibTex

Temperature Scaling Law for Quantum Annealing OptimizersT. Albash, V. Martin-Mayor, I. Hen
In Phys. Rev. Lett.
2017, 110502 pagesBibTex

Thermalization, Freeze-out, and Noise: Deciphering Experimental Quantum AnnealersJ. Marshall, E. G. Rieffel, I. Hen
In Phys. Rev. Applied
2017, 064025 pagesBibTex

Off-diagonal expansion quantum Monte CarloT. Albash, G. Wagenbreth, I. Hen
In Phys. Rev. E
2017, 063309 pagesBibTex

Initial Approaches for Discovery of Undocumented Functionality in FPGAsS. A. G. French, A. Dasu
In Government Microcircuit Applications and Critical Technology Conference
2017BibTex

Evaluating Rapid Application Development with Python for Heterogeneous Processor-based FPGAsA. G. Schmidt, G. Weisz, M. C. French
In IEEE International Symposium on Field Customizeable Computing Machines
2017BibTex

Radiation Hardening by Software Techniques on FPGAs: Flight Experiment Evaluation and ResultsM. Schmidt, T. Flatley
In IEEE Aerospace Conference
2017BibTex

Towards Continuous Scientific Data Analysis and Hypothesis EvolutionY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, A. Srivastava, P. Mallick
In Thirty-First AAAI Conference on Artificial Intelligence
2017, 4406–4414 pagesBibTex

2016

Toward an End-to-End Framework for Modeling, Monitoring and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Król, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. S. Meredith, J. S. Vetter, V. E. Lynch, B. Mayer, J. Wynne, M. P. Blanco, C. D. Carothers, J. M. LaPre, B. Tierney
In 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2016, Chicago, IL, USA, May 23-27, 2016
2016, 1370–1379 pagesBibTex

Consecutive Job Submission Behavior at Mira SupercomputerS. Schlagkamp, R. F. da Silva, W. Allcock, E. Deelman, U. Schwiegelshohn
In 25th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)
2016BibTex

Understanding User Behavior: from HPC to HTCS. Schlagkamp, R. F. da Silva, E. Deelman, U. Schwiegelshohn
In International Conference on Computational Science (ICCS)
2016BibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Performance Analysis of an I/O-Intensive Workflow executing on Google Cloud and Amazon Web ServicesH. Nawaz, G. Juve, R. F. da Silva, E. Deelman
In 18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM)
2016BibTex

Dynamic and Fault-Tolerant Clustering for Scientific WorkflowsW. Chen, R. F. da Silva, E. Deelman, T. Fahringer
In IEEE Transactions on Cloud Computing
2016, 49–62 pagesBibTex

Automated Demand-Based Vertical Elasticity for Heterogeneous Real-Time WorkloadsG. P. Tran, Y. - A. Chen, D. - I. Kang, J. P. Walters, S. P. Crago
In International Conference on Cloud Computing
2016BibTex

Hypervisor Performance Analysis for Real-Time WorkloadsG. P. Tran, Y. - A. Chen, D. - I. Kang, S. P. Crago
In Twentieth Annual IEEE High Performance Extreme Computing Conference
2016BibTex

The Maestro Flight Experiment: A 49-core radiation hardened processor in spaceC. M. Rogers, D. Barnhart, S. Crago
In 2016 IEEE Aerospace Conference
2016BibTex

Toward an End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Krol, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. Meredith, J. Vetter, V. Lynch, B. Mayer, J. Wynne III, M. Blanco, C. Carothers, J. LaPre, B. Tierney
In Workshop on Large-Scale Parallel Processing (LSPP 2016)
2016, 1370–1379 pagesBibTex

Automated Hypothesis Testing with Large Scientific Data RepositoriesY. Gil, D. Garijo, V. Ratnakar, R. Mayani, R. Adusumilli, H. Boyce, P. Mallick
In Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS)
2016BibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Increasing Waiting Time Satisfaction in Parallel Job Scheduling via a Flexible MILP ApproachS. Schlagkamp, M. Hofmann, L. Eufinger, R. F. da Silva
In 14th International Conference on High Performance Computing & Simulation
2016BibTex

Analyzing Users in Parallel Computing: A User-Oriented StudyS. Schlagkamp, R. F. da Silva, J. Renker, G. Rinkenauer
In 14th International Conference on High Performance Computing & Simulation
2016BibTex

Anomaly Detection for Scientific Workflow Applications on Networked CloudsP. Gaikwad, A. Mandal, P. Ruth, G. Juve, D. Krol, E. Deelman
In IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016)
2016BibTex

Science Automation in Practice: Performance Data Farming in WorkflowsD. Krol, J. Kitowski, R. F. da Silva, G. Juve, K. Vahi, M. Rynge, E. Deelman
In 21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA)
2016BibTex

Toward and End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific WorkflowsA. Mandal, P. Ruth, I. Baldin, D. Krol, G. Juve, R. Mayani, R. F. da Silva, E. Deelman, J. Meredith, J. Vetter, V. Lynch, B. Mayer, J. Wynne III, M. Blanco, C. Carothers, J. LaPre, B. Tierney
In Workshop on Large-Scale Parallel Processing (LSPP 2016)
2016, 1370–1379 pagesBibTex

Workflow Performance Profiles: Development and AnalysisD. Krol, R. F. da Silva, E. Deelman, V. E. Lynch
In Euro-Par 2016: Parallel Processing Workshops
2016BibTex

Automating Environmental Computing Applications with Scientific WorkflowsR. F. da Silva, E. Deelman, R. Filgueira, K. Vahi, M. Rynge, R. Mayani, B. Mayer
In Environmental Computing Workshop (ECW'16)
2016BibTex

OSG-GEM: Gene Expression Matrix Construction Using the Open Science GridW. L. Poehlman, M. Rynge, C. Branton, D. Balamurugan, F. A. Feltus
In Bioinformatics and Biology Insights
2016, 133–141 pagesBibTex

Scaling GIS Analysis Tasks from the Desktop to the Cloud Utilizing Contemporary Distributed Computing and Data Management Approaches: A Case Study of Project-based Learning and Cyberinfrastructure ConceptsT. L. Swetnam, J. D. Pelletier, C. Rasmussen, N. R. Callahan, N. Merchant, E. Lyons, M. Rynge, Y. Liu, V. Nandigam, C. Crosby
In XSEDE16 Conference on Diversity, Big Data, and Science at Scale
2016, 21:1–21:6 pagesBibTex

Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific WorkflowsR. F. da Silva, R. Filgueira, E. Deelman, E. Pairo-Castineira, I. M. Overton, M. Atkinson
In 11th Workflows in Support of Large-Scale Science (WORKS'16)
2016BibTex

Asterism: Pegasus and dispel4py hybrid workflows for data-intensive scienceR. Filgueira, R. F. da Silva, A. Krause, E. Deelman, M. Atkinson
In 7th International Workshop on Data-Intensive Computing in the Clouds (DataCloud'16)
2016BibTex

Enhancing reproducibility for computational methodsV. Stodden, M. McNutt, D. H. Balley, E. Deelman, Y. Gil, B. Hanson, M. A. Heroux, J. P. A. Ioannidis, Taufer
In Science
2016, 1240–1241 pagesBibTex

PGen: large-scale genomic variations analysis workflow and browser in SoyKBY. Liu, S. M. Khan, J. Wang, M. Rynge, Y. Zhang, S. Zeng, S. Chen, J. V. Maldonado dos Santos, B. Valliyodan, P. P. Calyam, N. Merchant, H. T. Nguyen, D. Xu, T. Joshi
In BMC Bioinformatics
2016, 337 pagesBibTex

Automating environmental computing applications with scientific workflowsR. F. da Silva, E. Deelman, R. Filgueira, K. Vahi, M. Rynge, R. Mayani, B. Mayer
In 12th IEEE International Conference on e-Science, e-Science 2016, Baltimore, MD, USA, October 23-27, 2016
2016, 400–406 pagesBibTex

Reducing Data Movement with Approximate Computing TechniquesS. Crago, D. Yeung
In IEEE Conference on Rebooting Computing
2016BibTex

Quantum Annealing for Constrained OptimizationI. Hen, F. M. Spedalieri
In Phys. Rev. Applied
2016, 034007 pagesBibTex

Accelerating Soft-Error-Rate (SER) Estimation in the Presence of Single Event TransientsJ. Li, J. Draper
In Design Automation Conference (DAC)
2016BibTex

Joint Soft-Error-Rate (SER) Estimation for Combinational Logic and Sequential ElementsJ. Li, J. Draper
In International Symposium on VLSI (ISVLSI)
2016BibTex

A New Metric to Measure Cache Utilization for HPC WorkloadsA. Deshpande, J. T. Draper
In International Symposium on Memory Systems (MEMSYS)
2016BibTex

Network-Optimized Distributed Memory Parallel Breadth-First SearchP. Sharma, J. Draper
In ACM/IEEE Supercomputing Conference (SC)
2016BibTex

Practical engineering of hard spin-glass instancesJ. Marshall, V. Martin-Mayor, I. Hen
In Phys. Rev. A
2016, 012320 pagesBibTex

Driver Hamiltonians for constrained optimization in quantum annealingI. Hen, M. S. Sarandy
In Phys. Rev. A
2016, 062312 pagesBibTex

Quantum Annealing for Constrained OptimizationI. Hen, F. M. Spedalieri
In Phys. Rev. Applied
2016, 034007 pagesBibTex

Energetic Cost of Superadiabatic Quantum ComputationI. B. Coulamy, A. C. Santos, I. Hen, M. S. Sarandy
In Frontiers in ICT
2016, 19 pagesBibTex

What goes on behind closed doors?: How college dormitory residents change to save energy during a competition-based energy reduction interventionN. Sintov, E. Dux, A. Tran, M. Orosz
In International Journal of Sustainability in Higher Education
2016, 451-470 pagesBibTex

A window into occupant-driven energy outcomes: Leveraging sub-metering infrastructure to examine psychosocial factors driving long-term outcomes of short-term competition-based energy interventionsK. Konis, M. Orosz, N. Sintov
In Energy and Buildings
2016, 206 - 217 pagesBibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

Science automation in practice: Performance data farming in workflowsD. Król, J. Kitowski, R. F. da Silva, G. Juve, K. Vahi, M. Rynge, E. Deelman
In 21st IEEE International Conference on Emerging Technologies and Factory Automation, ETFA 2016, Berlin, Germany, September 6-9, 2016
2016, 1–4 pagesBibTex

PGen: large-scale genomic variations analysis workflow and browser in SoyKBY. Liu, S. M. Khan, J. Wang, M. Rynge, Y. Zhang, S. Zeng, S. Chen, J. M. V. dos Santos, B. Valliyodan, P. Calyam, N. Merchant, H. T. Nguyen, D. Xu, T. Joshi
In BMC Bioinformatics
2016, 337 pagesBibTex

Pegasus in the Cloud: Science Automation through Workflow TechnologiesE. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, R. F. da Silva
In IEEE Internet Computing
2016, 70–76 pagesBibTex

2015

Pegasus, a workflow management system for science automationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. R. Wenger
In Future Generation Comp. Syst.
2015, 17–35 pagesBibTex

Heterogeneous Cloud Computing: The Way ForwardS. P. Crago, J. P. Walters
In Computer
2015, 59-61 pagesBibTex

Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirectA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In International Conference on Virtual Execution Environments (VEE)
2015BibTex

A Unified Hardware/Software MPSoC System Construction and Run-Time FrameworkS. Skalicky, A. G. Schmidt, S. Lopez, M. C. French
In Conference on Design, Automation and Test in Europe (DATE)
2015BibTex

A Parallelizing Matlab Compiler Framework and Run time for Heterogeneous SystemsS. Skalicky, S. Lopez, M. Lukowiak, A. G. Schmidt
In IEEE International Conference on High Performance Computing and Communications
2015BibTex

Building a Chemical-Protein Interactome on the Open Science GridR. Quick, S. Hayashi, S. Meroueh, M. Rynge, S. Teige, B. Wang, D. Xu
In Proceedings of Science, International Symposium on Grids and Clouds (ISGC) 2015
2015BibTex

Storage-aware Algorithms for Scheduling of Workflow Ensembles in CloudsP. Bryk, M. Malawski, G. Juve, E. Deelman
In Journal of Grid Computing
2015BibTex

Adapting Scientific Workflows on Networked Clouds Using Proactive IntrospectionA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, G. Juve, M. Rynge, E. Deelman, J. Chase
In IEEE/ACM Utility and Cloud Computing (UCC)
2015BibTex

Online Task Resource Consumption Prediction for Scientific WorkflowsR. F. da Silva, G. Juve, M. Rynge, E. Deelman, M. Livny
In Parallel Processing Letters
2015BibTex

Practical Resource Monitoring for Robust High Throughput ComputingG. Juve, B. Tovar, R. F. da Silva, D. Krol, D. Thain, E. Deelman, W. Allcock, M. Livny
In Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications
2015BibTex

Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHCR. F. da Silva, M. Rynge, G. Juve, I. Sfiligoi, E. Deelman, J. Letts, F. Wurthwein, M. Livny
In Procedia Computer Science, International Conference On Computational Science, ICCS 2015 Computational Science at the Gates of Nature
2015, 39–48 pagesBibTex

Reproducibility of neuroimaging analyses across operating systemsT. Glatard, L. B. Lewis, R. F. da Silva, R. Adalat, N. Beck, C. Lepage, P. Rioux, M. - E. Rousseau, T. Sherif, E. Deelman, N. Khalili-Mahani, A. C. Evans
In Frontiers in Neuroinformatics
2015BibTex

The Case for Resource Sharing in Scientific Workflow ExecutionsR. Oda, D. Cordeiro, R. F. da Silva, E. Deelman, K. Braghetto
In XVI Simposio em Sistemas Computacionais de Alto Desempenho (WSCAD)
2015BibTex

Understanding the scientific software ecosystem and its impact: Current and future measuresJ. Howison, E. Deelman, M. J. McLennan, R. F. da Silva, J. D. Herbsleb
In Research Evaluation
2015, 454–470 pagesBibTex

Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost OptimizationM. Malawski, K. Figiela, M. Bubak, E. Deelman, J. Nabrzyski
In Scientific Programming
2015BibTex

Algorithms for Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS CloudsM. Malawski, G. Juve, E. Deelman, J. Nabrzyski
In Future Generator Computer Systems
2015, 1–18 pagesBibTex

Pegasus: a Workflow Management System for Science AutomationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. J. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. Wenger
In Future Generation Computer Systems
2015, 17–35 pagesBibTex

Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow ExecutionsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In Future Generation Computer Systems
2015, 69–84 pagesBibTex

Boutiques: an application-sharing system based on Linux containersT. Glatard, R. F. da Silva, N. Boujelben, R. Adalat, N. Beck, P. Rioux, M. - E. Rousseau, E. Deelman, A. C. Evans
In NeuroInformatics 2015
2015BibTex

Climate Science Performance, Data and Productivity on TitanB. Mayer, P. Worley, R. F. da Silva, A. Gaddis
In Cray User Group Conference
2015BibTex

Panorama: Modeling The Performance of Scientific WorkflowsE. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, R. F. da Silva
In Workshop on Modeling and Simulation of Systems and Applications (ModSim 2015)
2015BibTex

Pegasus, a Workflow Management System for Science AutomationE. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. J. Maechling, R. Mayani, W. Chen, R. F. da Silva, M. Livny, K. Wenger
In Future Generation Computer Systems
2015, 17–35 pagesBibTex

Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirectA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In ACM SIGPLAN Notices
2015, 31–38 pagesBibTex

Reexamination of the evidence for entanglement in the D-Wave processorT. Albash, I. Hen, F. M. Spedalieri, D. A. Lidar
In arXiv:1506.03539
2015BibTex

Probing for quantum speedup in spin-glass problems with planted solutionsI. Hen, J. Job, T. Albash, T. F. Rønnow, M. Troyer, D. A. Lidar
In Phys. Rev. A
2015, 042325– pagesBibTex

Quantum annealing correction with minor embeddingW. Vinci, T. Albash, G. Paz-Silva, I. Hen, D. A. Lidar
In Phys. Rev. A
2015, 042310– pagesBibTex

Experimental quantum annealing: case study involving the graph isomorphism problemK. M. Zick, O. Shehab, M. C. French
In arXiv preprint arXiv:1503.06453
2015BibTex

A unified hardware/software MPSoC system construction and run-time frameworkS. Skalicky, A. G. Schmidt, S. Lopez, M. C. French
In Proceedings of the 2015 Design, Automation & Test in Europe Conference & Exhibition
2015, 301–304 pagesBibTex

IRIS (Integrity and Reliability in Integrated Circuits) Test Article Generation (ITAG)J. Draper, M. C. French
2015BibTex

HUBzero and Pegasus: integrating scientific workflows into science gatewaysM. McLennan, S. M. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. X. Song
In Concurrency and Computation: Practice and Experience
2015, 328–343 pagesBibTex

How Much Can the Total Aleatory Variability of Empirical Ground Motion Prediction Equations Be Reduced Using Physics-Based Earthquake Simulations?T. H. Jordan, F. Wang, R. W. Graves, S. Callaghan, K. B. Olsen, Y. Cui, K. R. Milner, G. Juve, K. Vahi, J. Yu, others
In AGU Fall Meeting Abstracts
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HUBzero and Pegasus: integrating scientific workflows into science gatewaysM. McLennan, S. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. Song
In Concurrency and Computation: Practice and Experience
2015, 328–343 pagesBibTex

Online Task Resource Consumption Prediction for Scientific WorkflowsR. F. da Silva, G. Juve, M. Rynge, E. Deelman, M. Livny
In Parallel Processing Letters
2015BibTex

Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHCR. F. da Silva, M. Rynge, G. Juve, I. Sfiligoi, E. Deelman, J. Letts, F. Würthwein, M. Livny
In Proceedings of the International Conference on Computational Science, ICCS 2015, Computational Science at the Gates of Nature, Reykjav'ık, Iceland, 1-3 June, 2015, 2014
2015, 39–48 pagesBibTex

2014

Evaluating High-level Program Invariants using Reconfigurable HardwareJ. Park, P. C. Diniz
In Proc. of the Intl. Symp. on Applied Reconfigurable Computing (ARC'14)
2014BibTex

GPU Passthrough Performance: A Comparison of KVM, Xen, VMWare ESXi, and LXC for CUDA and OpenCL ApplicationsJ. P. Walters, A. Younge, D. - I. Kang, K. - T. Yao, M. Kang, S. P. Crago, G. Fox
In International Conference on Cloud Computing
2014BibTex

Bridging the Virtualization Performance Gap for HPC Using SR-IOV for InfiniBandM. Musleh, V. Pai, J. P. Walters, A. Younge, S. P. Crago
In International Conference on Cloud Computing
2014BibTex

Evaluating GPU Passthrough in Xen for High Performance Cloud ComputingA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In Workshop on High-Performance Grid and Cloud Computing (HPGC)
2014BibTex

Dynamic Runtime Optimizations for Systems of Heterogeneous ArchitecturesG. P. Tran, D. - I. Kang, S. P. Crago
In Eighteenth Annual IEEE High Performance Extreme Computing Conference
2014BibTex

Energy Performance of FPGAs on PERFECT Suite KernelsS. R. Kuppannagari, R. Chen, A. Sanny, S. G. Singapura, G. P. Tran, S. Zhou, Y. Hu, S. P. Crago, V. K. Prasanna
In Eighteenth Annual IEEE High Performance Extreme Computing Conference
2014BibTex

Bridging the Virtualization Performance Gap for HPC Using SR-IOV for InfiniBandM. Musleh, V. Pai, J. P. Walters, A. Younge, S. P. Crago
In International Conference on Cloud Computing
2014BibTex

Maestro Software and Application PerformanceJ. P. Walters, C. M. Rogers, S. P. Crago
In GOMACTech-14
2014BibTex

Evaluating GPU Passthrough in Xen for High Performance Cloud ComputingA. J. Younge, J. P. Walters, S. P. Crago, G. C. Fox
In Workshop on High-Performance Grid and Cloud Computing (HPGC)
2014BibTex

Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow ExecutionsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In Future Generation Computer Systems
2014BibTex

Practical Resource Monitoring for Robust High Throughput ComputingG. Juve, B. Tovar, R. F. da Silva, C. Robinson, D. Thain, E. Deelman, W. Allcock, M. Livny
2014BibTex

Cost Optimization of Execution of Multi-level Deadline-Constrained Scientific Workflows on CloudsM. Malawski, K. Figiela, M. Bubak, E. Deelman, J. Nabrzyski
In Parallel Processing and Applied Mathematics
2014, 251-260 pagesBibTex

A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow ExecutionsS. Srinivasan, G. Juve, R. F. da Silva, K. Vahi, E. Deelman
In 9th Workshop on Workflows in Support of Large-Scale Science (WORKS)
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A Performance Model to Estimate Execution Time of Scientific Workflows on the CloudI. Pietri, G. Juve, E. Deelman, R. Sakellariou
In 9th Workshop on Workflows in Support of Large-Scale Science (WORKS)
2014BibTex

Community Resources for Enabling Research in Distributed Scientific WorkflowsR. F. da Silva, W. Chen, G. Juve, K. Vahi, E. Deelman
In 10th IEEE International Conference on e-Science (eScience 2014)
2014BibTex

A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case StudyI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In 1st International Workshop on Reproducibility in Parallel Computing (REPPAR), in conjunction with Euro-Par 2014
2014BibTex

A Unified Approach for Modeling and Optimization of Energy, Makespan and Reliability for Scientific Workflows on Large-Scale Computing InfrastructuresR. F. da Silva, T. Fahringer, J. J. Durillo, E. Deelman
In Workshop on Modeling and Simulation of Systems and Applications (MODSIM)
2014BibTex

Extending provenance information in CBRAIN to address reproducibility issues across computing platformsT. Glatard, L. B. Lewis, R. F. da Silva, M. - E. Rousseau, C. Lepage, P. Rioux, N. Mahani, E. Deelman, A. C. Evans
In NeuroInformatics 2014
2014BibTex

Leveraging Semantics to Improve Reproducibility in Scientific WorkflowsI. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, O. Corcho
In The reproducibility at XSEDE workshop
2014BibTex

A Human-Building Interaction Framework for Personalized Thermal Comfort Driven Systems in Office Buildings, " ASCE Journal of Computing in Civil EngineeringF. Jazizadeh, A. Ghahramani, B. Becerik-Gerber, T. Kichkaylo, M. Orosz
2014BibTex

User-Led Decentralized Thermal Comfort Driven HVAC Operations for Improved Efficiency in Office BuildingsF. Jazizadeh, A. Ghahramani, B. Becerik-Gerber, T. Kichkaylo, M. Orosz
In http://dx.doi.org/10.1016/j.enbuild.2013.11.066, Energy and Buildings
2014BibTex

High Level Hardware/Software Embedded System Design with RedsharcS. Skalicky, A. G. Schmidt, M. C. French
In International Workshop on FPGAs for Software Programmers
2014BibTex

Community Resources for Enabling and Evaluating Research on Scientific WorkflowsR. F. da Silva, W. Chen, G. Juve, K. Vahi, E. Deelman
In 10th IEEE International Conference on e-Science
2014, 177–184 pagesBibTex

Experiments with Complex Scientific Applications on Hybrid Cloud InfrastructuresM. Malawski, P. Nowakowski, T. Gubala, M. Kasztelnik, M. Bubak, R. F. da Silva, E. Deelman, J. Nabrzyski
In NSFCloud Workshop on Experimental Support for Cloud Computing
2014BibTex

Continuous-time quantum algorithms for unstructured problemsI. Hen
2014, 045305 pagesBibTex

High level hardware/software embedded system design with redsharcS. Skalicky, A. G. Schmidt, M. C. French
In arXiv preprint arXiv:1408.4725
2014BibTex

Content-Oriented Mobile Edge Technology System Integration Framework and Field EvaluationZ. Cao, M. C. French, R. Krishnan, J. Ng, D. Talmage, Q. Zhang
In Military Communications Conference (MILCOM), 2014 IEEE
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Intra-die process variation aware anomaly detection in FPGAsY. Pino, V. Jyothi, M. C. French
In Test Conference (ITC), 2014 IEEE International
2014, 1–6 pagesBibTex

High-precision self-characterization for the LUT burn-in information leakage threatK. M. Zick, S. Li, M. C. French
In Field Programmable Logic and Applications (FPL), 2014 24th International Conference on
2014, 1–6 pagesBibTex

A cleanup algorithm for implementing storage constraints in scientific workflow executionsS. Srinivasan, G. Juve, R. F. da Silva, K. Vahi, E. Deelman
In Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, WORKS '14, New Orleans, Louisiana, USA, November 16-21, 2014
2014, 41–49 pagesBibTex

Optimizing CyberShake Seismic Hazard Workflows for Large HPC ResourcesS. Callaghan, P. J. Maechling, G. Juve, K. Vahi, E. Deelman, T. H. Jordan
In AGU Fall Meeting Abstracts
2014BibTex

Using Cloud Computing To Create A Multi-Wavelength Atlas Of The Galactic PlaneG. B. Berriman, J. Good, M. Rynge, G. Juve, E. Deelman, J. Kinney, A. Merrihew
In American Astronomical Society Meeting Abstracts# 223
2014BibTex

2013

A Practical Characterization of a NASA SpaceCube Application through Fault Emulation and Laser TestingJ. P. Walters, K. M. Zick, M. French
In Dependable Systems and Networks (DSN)
2013BibTex

The MATISSE MATLAB CompilerJ. Bispo, P. Pinto, R. Nobre, T. Carvalho, J. M. P. Cardoso, P. C. Diniz
In Proc. of the Eleventh IEEE Intl. Conf. on Industrial Informatics (INDIN'2013)
2013BibTex

Specifying Adaptations through a DSL with an Application to Mobile Robot NavigationA. C. Santos, J. M. P. Cardoso, P. C. Diniz, D. R. Ferreira
In Proc. of the Intl. Symp. on Languages, Applications and Technologies (SLATE'13)
2013BibTex

Fast Lossless Image Compression with Radiation Hardening By Hardware/Software Co-Design on Platform FPGAsA. G. Schmidt, M. C. French
In Proceedings of the 24th Annual International Conference on Application-Specific Systems Architectures and Processors (ASAP'13)
2013BibTex

Implementation of Kernels on the Maestro ProcessorJ. Suh, D. Kang, S. P. Crago
In IEEE Aerospace Conference
2013BibTex

Evaluating I/O Aware Network Management for Scientific Workflows on Networked CloudsA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, M. Rynge, E. Deelman
In The 3rd International Workshop on Network-aware Data Management, in conjunction with SC13
2013BibTex

Balanced Task Clustering in Scientific WorkflowsW. Chen, R. F. da Silva, E. Deelman, R. Sakellariou
In 9th IEEE International Conference on e-Science (eScience 2013)
2013BibTex

Producing an Infrared Multiwavelength Galactic Plane Atlas using Montage, Pegasus and Amazon Web ServicesM. Rynge, G. Juve, J. Kinney, J. Good, B. G. Berriman, A. Merrihew, E. Deelman
In 23rd Annual Astronomical Data Analysis Software and Systems (ADASS) Conference
2013BibTex

Toward Fine-Grained Online Task Characteristics Estimation in Scientific WorkflowsR. F. da Silva, G. Juve, E. Deelman, T. Glatard, F. Desprez, D. Thain, B. Tovar, M. Livny
In 8th Workshop On Workflows in Support of Large-Scale Science (WORKS)
2013BibTex

Introducing PRECIP: An API for Managing Repeatable Experiments in the CloudS. Azarnoosh, M. Rynge, G. Juve, E. D. M. Nieć, M. Malawski, R. F. da Silva
In Workshop on Cloud Computing for Research Collaborations (CRC)
2013BibTex

Imbalance Optimization in Scientific WorkflowsW. Chen, E. Deelman, R. Sakellariou
In International Conference on Supercomputing (ICS 2013)
2013BibTex

Rethinking Data Management for Big Data Scientific WorkflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
In Workshop on Big Data and Science: Infrastructure and Services
2013BibTex

Energy-Constrained Provisioning for Scientific Workflow EnsemblesI. Pietri, M. Malawski, G. Juve, E. Deelman, J. Nabrzyski, R. Sakellariou
In IEEE International Conference on Cloud and Green Computing (CGC13)
2013BibTex

Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific WorkflowsG. Juve, M. Rynge, E. Deelman, J. - S. Vöckler, B. G. Berriman
In Computing in Science and Engineering
2013, 20-29 pagesBibTex

Hosted Science: Managing Computational Workloads in the CloudE. Deelman, G. Juve, M. Malawski, J. Nabrzyski
In Parallel Processing Letters
2013BibTex

Bringing Scientific Workflow to the Masses via Pegasus and HUBzeroM. McLennan, S. Clark, F. McKenna, E. Deelman, M. Rynge, K. Vahi, D. Kearney, C. Song
In Proceedings of the 5th International Workshop on Science Gateways
2013BibTex

A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific WorkflowsK. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. Mehta, E. D. andrew Jones
In Journal of Grid Computing
2013, 381-406 pagesBibTex

The Application of Cloud Computing to Scientific Workflows: A Study of Cost and PerformanceB. G. Berriman, G. Juve, J. - S. Vöckler, E. Deelman, M. Rynge
In Proceedings of the Royal Society A
2013BibTex

Characterizing and Profiling Scientific WorkflowsG. Juve, A. Chervenak, E. Deelman, S. Bharathi, G. Mehta, K. Vahi
In Future Generation Computer Systems
2013, 682-692 pagesBibTex

A Systematic Approach to Occupancy Modeling in Ambient Sensor Rich Office Environments, Simulation: Transactions of the Society for Modeling and Simulation InternationalZ. Yang, N. Li, B. Becerik-Gerber, M. Orosz
2013BibTex

�Protecting our Nation�s Ports with the Port Security Risk Analysis and Resource Allocation System (PortSec 3M. Orosz, J. Chen, I. Maya, D. Salazar, S. Chatterjee, D. Wei
In 0), � in Proceedings of 2013 IEEE International Conference on Technologies For Homeland Security (IEEE HST 2013)
2013, 12–14 pagesBibTex

A Virtual Imaging Platform for Multi-Modality Medical Image SimulationT. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, N. Cerezo, P. Clarysse, A. Gaignard, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary, D. Friboulet
In IEEE Transactions on Medical Imaging
2013, 110–118 pagesBibTex

Toward fine-grained online task characteristics estimation in scientific workflowsR. F. da Silva, G. Juve, E. Deelman, T. Glatard, F. Desprez, D. Thain, B. Tovar, M. Livny
In 8th Workshop on Workflows in Support of Large-Scale Science
2013, 58–67 pagesBibTex

Introducing PRECIP: an API for Managing Repeatable Experiments in the CloudS. Azarnoosh, M. Rynge, G. Juve, E. Deelman, M. Niec, M. Malawski, R. F. da Silva
In IEEE 5th International Conference on Cloud Computing Technology and Science
2013, 19–26 pagesBibTex

Period Finding with Adiabatic Quantum ComputationI. Hen
In arXiv:1307.6538
2013BibTex

Open-source bitstream generationR. K. Soni, N. Steiner, M. C. French
In Field-Programmable Custom Computing Machines (FCCM), 2013 IEEE 21st Annual International Symposium on
2013, 105–112 pagesBibTex

Sensing nanosecond-scale voltage attacks and natural transients in fpgasK. M. Zick, M. Srivastav, W. Zhang, M. C. French
In Proceedings of the ACM/SIGDA international symposium on Field programmable gate arrays
2013, 101–104 pagesBibTex

Fast lossless image compression with radiation hardening by hardware/software co-design on platform FPGAsA. G. Schmidt, M. C. French
In Application-Specific Systems, Architectures and Processors (ASAP), 2013 IEEE 24th International Conference on
2013, 103–106 pagesBibTex

A practical characterization of a NASA SpaceCube application through fault emulation and laser testingJ. P. Walters, K. M. Zick, M. C. French
In Dependable Systems and Networks (DSN), 2013 43rd Annual IEEE/IFIP International Conference on
2013, 1–8 pagesBibTex

Characterizing and profiling scientific workflowsG. Juve, A. L. Chervenak, E. Deelman, S. Bharathi, G. Mehta, K. Vahi
In Future Generation Comp. Syst.
2013, 682–692 pagesBibTex

A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific WorkflowsK. Vahi, I. Harvey, T. Samak, D. K. Gunter, K. Evans, D. H. Rogers, I. J. Taylor, M. Goode, F. Silva, E. A. -, G. Mehta, E. Deelman, A. Jones
In J. Grid Comput.
2013, 381–406 pagesBibTex

Rethinking data management for big data scientific workflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
In Proceedings of the 2013 IEEE International Conference on Big Data, 6-9 October 2013, Santa Clara, CA, USA
2013, 27–35 pagesBibTex

Bringing Scientific Workflow to the Masses via Pegasus and HUBzeroM. McLennan, S. M. Clark, F. McKenna, E. Deelman, M. Rynge, K. Vahi, D. Kearney, C. X. Song
In Proceedings of the 5th International Workshop on Science Gateways, Zurich, Switzerland, 3-5 June, 2013
2013BibTex

The application of cloud computing to scientific workflows: a study of cost and performanceB. G. Berriman, E. Deelman, G. Juve, M. Rynge, J. - S. Vöckler
In Phil. Trans. R. Soc. A
2013, 20120066 pagesBibTex

Comparing futuregrid, amazon ec2, and open science grid for scientific workflowsG. Juve, M. Rynge, E. Deelman, J. - S. Vockler, B. G. Berriman
In Computing in Science & Engineering
2013, 20–29 pagesBibTex

Bringing scientific workflow to the masses via pegasus and hubzeroM. McLennan, S. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, C. Song
In parameters
2013, 14 pagesBibTex

Snowmass energy frontier simulations using the open science grid (a Snowmass 2013 whitepaper)A. Avetisyan, S. Bhattacharya, M. Narain, S. Padhi, J. Hirschauer, T. Levshina, P. McBride, C. Sehgal, M. Slyz, M. Rynge, others
In arXiv preprint arXiv:1308.0843
2013BibTex

Rethinking data management for big data scientific workflowsK. Vahi, M. Rynge, G. Juve, R. Mayani, E. Deelman
In Big Data, 2013 IEEE International Conference on
2013, 27–35 pagesBibTex

Evaluating i/o aware network management for scientific workflows on networked cloudsA. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, M. Rynge, E. Deelman
In Proceedings of the Third International Workshop on Network-Aware Data Management
2013, 2 pagesBibTex

Introducing precip: an api for managing repeatable experiments in the cloudS. Azarnoosh, M. Rynge, G. Juve, E. Deelman, M. Niec, M. Malawski, R. F. da Silva
In Cloud Computing Technology and Science (CloudCom), 2013 IEEE 5th International Conference on
2013, 19–26 pagesBibTex

Creating A Galactic Plane Atlas With Amazon Web ServicesB. G. Berriman, E. Deelman, J. Good, G. Juve, J. Kinney, A. Merrihew, M. Rynge
In arXiv preprint arXiv:1312.6723
2013BibTex

Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific WorkflowsG. Juve, M. Rynge, E. Deelman, J. -, B. G. Berriman
In Computing in Science and Engineering
2013, 20–29 pagesBibTex

Introducing PRECIP: An API for Managing Repeatable Experiments in the CloudS. Azarnoosh, M. Rynge, G. Juve, E. Deelman, M. Niec, M. Malawski, R. F. da Silva
In IEEE 5th International Conference on Cloud Computing Technology and Science, CloudCom 2013, Bristol, United Kingdom, December 2-5, 2013, Volume 2
2013, 19–26 pagesBibTex

2012

Silent Data Corruption and Embedded Processing With NASA's SpaceCubeK. M. Zick, C. C. Yu, J. P. Walters, M. French
In Embedded Systems Letters, IEEE
2012, 33–36 pagesBibTex

Applying Radiation Hardening by Software to Fast Lossless compression prediction on FPGAsA. G. Schmidt, J. P. Walters, K. M. Zick, M. French, D. Keymeulen, N. Aranki, M. Klimesh, A. Kiely
In Aerospace Conference, 2012 IEEE
2012, 1–10 pagesBibTex

Energy Consumption Scheduler for Demand Response Systems in the Smart GridJ. Lee, H. - J. Kim, G. - L. Park, M. Kang
In Journal of Information Science and Engineering
2012, 955-969 pagesBibTex

HwPMI: An Extensible Performance Monitoring Infrastructure for Improving Hardware Design and Productivity on FPGAsA. G. Schmidt, N. Stiner, M. C. French, R. Sass
In International Journal of Reconfigurable Computing
2012BibTex

An Evaluation of an Integrated On-Chip/Off-Chip Network for High Performance Reconfigurable ComputingA. G. Schmidt, W. V. Kritikos, S. Gao, R. Sass
In International Journal of Reconfigurable Computing
2012BibTex

Integrating Fast Lossless Compression Prediction with Radiation Hardening by Software on FPGAsA. G. Schmidt, J. P. Walters, M. C. French, D. Keymeulen, N. Aranki, M. Klimesh, A. Kiely
In Proceedings of the 2012 IEEE Aerospace Conference
2012BibTex

Integrating High Performance File Systems in a Cloud Computing EnvironmentA. Pan, J. P. Walters, V. S. Pai, D. I. D. Kang, S. P. Crago
In DISCS Workshop
2012BibTex

Specifying Compilation Strategies for FPGA-based SystemsJ. M. P. Cardoso, J. Teixeira, J. Alves, R. Nobre, P. C. Diniz, J. Coutinho, W. Luk
In Proc. of the 20th Annual IEEE Intl. Symp. on Field-Programmable Custom Computing Machines (FCCM'12)
2012BibTex

LARA: An Aspect-Oriented Programming Language for Embedded SystemsJ. M. P. Cardoso, T. Carvalho, J. Coutinho, W. Luk, R. Nobre, P. C. Diniz, Z. Petrov
In Proc. of the Intl. Conf. on Aspect-Oriented Software Development (AOSD'12)
2012BibTex

Integrating High Performance File Systems in a Cloud Computing EnvironmentA. Pan, J. P. Walters, V. Pai, D. Kang, S. P. Crago
In International Workshop on Data-Intensive Scalable Computing Systems, held in conjunction with SC12
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Implementation of FFT and CRBLASTER on the Maestro ProcessorJ. Suh, K. J. Mighell, D. I. Kang, S. P. Crago
In IEEE Aerospace Conference
2012BibTex

A General Approach to Real-time Workflow MonitoringK. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. M. andrew Jones, E. Deelman
In The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)
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Integrating Policy with Scientific Workflow Management for Data-Intensive ApplicationsA. L. Chervenak, D. E. Smith, W. Chen, E. Deelman
In The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)
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Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2R. Agarwal, G. Juve, E. Deelman
In 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)
2012BibTex

A Tale Of 160 Scientists, Three Applications, A Workshop and A CloudB. G. Berriman, C. Brinkworth, D. Gelino, D. K. Wittman, E. Deelman, G. Juve, M. Rynge, J. Kinney
In Astronomical Data Analysis Software and Systems XXII
2012BibTex

WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed EnvironmentsW. Chen, E. Deelman
In The 8th IEEE International Conference on eScience 2012 (eScience 2012)
2012BibTex

Failure Analysis of Distributed Scientific Workflows Executing in the CloudT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, F. Silva
In 8th International Conference on Network and Service Management (CNSM 2012)
2012BibTex

Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS CloudsM. Malawski, G. Juve, E. Deelman, J. Nabrzyski
In 24th IEEE/ACM International Conference on Supercomputing (SC12)
2012BibTex

An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2G. Juve, E. Deelman, B. G. Berriman, B. P. Berman, P. J. Maechling
In Journal of Grid Computing
2012, 5-21 pagesBibTex

Using Clouds for Science, Is it Just Kicking the Can Down The Road?E. Deelman, G. Juve, B. G. Berriman
In 2nd International Conference on Cloud Computing and Services Science (CLOSER 2012)
2012BibTex

Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/WorkerM. Rynge, G. Juve, K. Vahi, S. Callaghan, G. Mehta, P. J. Maechling, E. Deelman
In XSEDE12
2012BibTex

Fault Tolerant Clustering in Scientific WorkflowsW. Chen, E. Deelman
In IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in conjunction with IEEE 8th World Congress on Services (SERVICES 2012)
2012BibTex

Integration of Workflow Partitioning and Resource ProvisioningW. Chen, E. Deelman
In The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium
2012BibTex

A Non-Intrusive Occupancy Monitoring System for Demand Driven HVAC Operations, (http://cedb.asce.org/cgi/WWWdisplay.cgi?289937), Proceedings, CRC 2012: Construction Research Congress: Construction Challenges in a Flat World, ASCE, RestonY. Z, L. N, B. - G. B, O. M.
2012, 828–837 pagesBibTex

�PortSec2E. Lennon, M. Orosz, T. Kichkaylo, I. Maya, D. Wei
In 0: The Next Generation, � in Proceedings of 2012 IEEE International Conference on Technologies For Homeland Security (IEEE HST 2012)
2012, 13–15 pagesBibTex

�A Multi-Sensor Based Occupancy Estimation Model for Supporting Demand Driven HVAC Operations, � in Proceedings of Simulation for Architecture and Urban Design (SimAUD) (http://toc.proceedings.com/14527webtoc.pdf), Orlando, FLY. Z, L. N, B. - G. B, O. M.
2012, 100–107 pagesBibTex

Solving the graph-isomorphism problem with a quantum annealerI. Hen, A. P. Young
In Phys. Rev. A
2012, 042310 pagesBibTex

Performance of the quantum adiabatic algorithm on random instances of two optimization problems on regular hypergraphsE. Farhi, D. Gosset, I. Hen, A. W. Sandvik, P. Shor, A. P. Young, F. Zamponi
In Phys. Rev. A
2012, 052334 pagesBibTex

Redsharc: A programming model and on-chip network for multi-core systems on a programmable chipW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. C. French
In International Journal of Reconfigurable Computing
2012, 2 pagesBibTex

Hwpmi: an extensible performance monitoring infrastructure for improving hardware design and productivity on fpgasA. G. Schmidt, N. Steiner, M. C. French, R. Sass
In International Journal of Reconfigurable Computing
2012, 2 pagesBibTex

Silent data corruption and embedded processing with NASA's SpaceCubeK. M. Zick, C. - C. Yu, J. P. Walters, M. C. French
In IEEE Embedded Systems Letters
2012, 33–36 pagesBibTex

Applying radiation hardening by software to fast lossless compression prediction on FPGAsA. G. Schmidt, J. P. Walters, K. M. Zick, M. C. French, D. Keymeulen, N. Aranki, M. Klimesh, A. Kiely
In Aerospace Conference, 2012 IEEE
2012, 1–10 pagesBibTex

Failure analysis of distributed scientific workflows executing in the cloudT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, F. Silva, K. Vahi
In 8th International Conference on Network and Service Management, CNSM 2012, Las Vegas, NV, USA, October 22-26, 2012
2012, 46–54 pagesBibTex

A General Approach to Real-Time Workflow MonitoringK. Vahi, I. Harvey, T. Samak, D. K. Gunter, K. Evans, D. H. Rogers, I. J. Taylor, M. Goode, F. Silva, E. A. -, G. Mehta, A. Jones, E. Deelman
In 2012 SC Companion: High Performance Computing, Networking Storage and Analysis, Salt Lake City, UT, USA, November 10-16, 2012
2012, 108–118 pagesBibTex

Curating genomic epidemiology data in The PAGE StudyG. Kumaraguruparan, G. Mehta, A. Nato, J. L. Ambite, S. Buyske, R. Mayani, C. Cai, J. Vöckler, E. Deelman, T. Matise
In 62nd Annual Meeting of the American Society of Human Genetics (ASHG)
2012BibTex

Enabling large-scale scientific workflows on petascale resources using MPI master/workerM. Rynge, S. Callaghan, E. Deelman, G. Juve, G. Mehta, K. Vahi, P. J. Maechling
In Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond
2012, 49 pagesBibTex

Supporting shared resource usage for a diverse user community: the OSG experience and lessons learnedG. Garzoglio, T. Levshina, M. Rynge, C. Sehgal, M. Slyz
In Journal of Physics: Conference Series
2012, 032046 pagesBibTex

A Tale Of 160 Scientists, Three Applications, A Workshop and A CloudB. G. Berriman, C. Brinkworth, D. Gelino, D. K. Wittman, E. Deelman, G. Juve, M. Rynge, J. Kinney
In arXiv preprint arXiv:1211.4055
2012BibTex

High-performance compute infrastructure in astronomy: 2020 is only months awayB. Berriman, E. Deelman, G. Juve, M. Rynge, J. - S. Vöckler
2012BibTex

2011

The PowerPC 405 Memory Sentinel and Injection SystemM. Bucciero, J. P. Walters, R. Moussalli, S. Gao, M. C. French
In Field-Programmable Custom Computing Machines (FCCM), 2011 IEEE 19th Annual International Symposium on
2011, 154 -161 pagesBibTex

Checkpoint/Restart and Beyond: Resilient High Performance Computing with FPGAsA. G. Schmidt, B. Huang, R. Sass, M. C. French
In Field-Programmable Custom Computing Machines (FCCM), 2011 IEEE 19th Annual International Symposium on
2011, 162 -169 pagesBibTex

Torc: towards an open-source tool flowN. Steiner, A. Wood, H. Shojaei, J. Couch, P. Athanas, M. C. French
In Proceedings of the 19th ACM/SIGDA international symposium on Field programmable gate arrays
2011, 41–44 pagesBibTex

Software fault tolerance methodology and testing for the embedded PowerPCM. Bucciero, J. P. Walters, M. C. French
In Aerospace Conference, 2011 IEEE
2011, 1 -9 pagesBibTex

Autonomous On-board Processing for Sensor Systems: Initial Fault Tolerance and Autonomy ResultsM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
2011BibTex

Software fault tolerance methodology and testing for the embedded PowerPCM. Bucciero, J. P. Walters, M. C. French
In Aerospace Conference, 2011 IEEE
2011, 1 -9 pagesBibTex

Autonomous On-board Processing for Sensor Systems: Initial Fault Tolerance and Autonomy ResultsM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
2011BibTex

Buffered retransmission on the grid-style wireless process control networksJ. Lee, G. - L. Park, I. - H. Shin, M. Kang
In INFORMATION
2011, 1481-1496 pagesBibTex

Design and development of a run-time monitor for multi-core architectures in cloud computingM. Kang, D. - I. Kang, S. P. Crago, G. - L. Park, J. Lee
In Sensors
2011, 3595-3610 pagesBibTex

Heterogeneous cloud computingS. P. Crago, K. Dunn, P. Eads, L. Hochstein, D. - I. Kang, M. Kang, D. Modium, K. Singh, J. Suh
In PPAC
2011BibTex

Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. - I. Kang, M. Kang, R. Kost, K. Singh, J. P. Walters
In 4th IEEE International Conference on Space Mission Challenges for Information Technology (SMC-IT)
2011BibTex

Investigation into Scaling I/O Bound Streaming Applications Productively with an all-FPGA ClusterA. G. Schmidt, S. Datta, A. A. Mendon, R. Sass
In Parallel Computing
2011BibTex

Redsharc: A Programming Model and On-Chip Network for Multi-Core Systems on a Programmable ChipW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. C. French
In International Journal of Reconfigurable Computing
2011BibTex

Improving Design Productivity with a Hardware Performance Monitoring InfrastructureA. G. Schmidt, R. Sass
In Proceedings of the 6th Annual International Conference on Reconfigurable Computing and FPGAs (ReConFig'11)
2011BibTex

A Radix Tree Router for Scalable FPGA NetworksW. V. Kritikos, Y. Rajasekhar, A. G. Schmidt, R. Sass
In Proceedings of the 21th Annual Conference on Field Programmable Logic and Applications (FPL'11)
2011BibTex

Reconfigurable Computing Cluster Project: A Five-Year Perspective of the ProjectR. Sass, A. G. Schmidt, S. Buscemi
In Parallel Computing with FPGAs (ParaFPGA 2011)
2011BibTex

Checkpoint/Restart and Beyond: Resilient High Performance Computing with FPGAsA. G. Schmidt, B. Huang, R. Sass, M. C. French
In Proceedings of the 19th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'11)
2011, 162–169 pagesBibTex

Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. I. Kang, M. Kang, R. Kost, K. Singh, J. Suh, J. P. Walters
In Space Mission Challenges for Information Technology (SMC-IT), 2011 IEEE Fourth International Conference on
2011, 95–102 pagesBibTex

FFTW and Complex Ambiguity Function Performance on the Maestro ProcessorK. Singh, J. P. Walters, J. Hestness, J. Suh, C. M. Rogers, S. P. Crago
In Aerospace Conference, 2011 IEEE
2011, 1–8 pagesBibTex

Software Fault Tolerance Methodology and Testing for the Embedded PowerPCM. Bucciero, J. P. Walters, M. French
In Aerospace Conference, 2011 IEEE
2011, 1–9 pagesBibTex

Heterogeneous Cloud ComputingS. P. Crago, K. Dunn, P. Eads, L. Hochstein, D. I. Kang, M. Kang, D. Modium, K. Singh, J. Suh, J. P. Walters
In Workshop on Parallel Programming on Accelerator Clusters (PPAC)
2011, 378–385 pagesBibTex

Software-Based Fault Tolerance for the Maestro Many-Core ProcessorJ. P. Walters, R. Kost, K. Singh, J. Suh, S. P. Crago
In Aerospace Conference, 2011 IEEE
2011, 1–12 pagesBibTex

The PowerPC 405 Memory Sentinel and Injection SystemM. Bucciero, J. P. Walters, R. Moussalli, S. Gao, M. French
In Field-Programmable Custom Computing Machines (FCCM), 2011 IEEE 19th Annual International Symposium on
2011, 154–161 pagesBibTex

Automatic Early Failure Detection for Rod Pump SystemsS. Liu, C. S. Raghavendra, Y. Liu, K. - T. Yao, T. L. Lenz, L. Olabinjo, O. Balogun, D. C. G. Babu, I. Ershaghi
In Annual Technical Conference and Exhibition (ATCE 2011)
2011BibTex

Semi-supervised Failure Prediction for Oil Production WellsY. Liu, K. - T. Yao, S. Liu, C. S. Raghavendra, O. Balogun, L. Olabinjo
In Workshop on Domain Driven Data Mining at International Conference on Data Mining
2011BibTex

Using FPGAs for Data Reorganization and Pre-Fetching of Pointer-based Data Structures for Scientific ComputationsJ. Park, P. C. Diniz
In IEEE Trans. in Design and Test in Computers: Special Issue on Design Methods and Tools for FPGA-Based Acceleration of Scientific Computing
2011BibTex

Domain-Specific Optimization of Signal Recognition Targeting FPGAsM. Demertzi, P. C. Diniz, M. W. Hall, A. C. Gilbert, Y. Wang
In ACM Trans. on Reconfigurable Technology and Systems (TRETS)
2011BibTex

Programming Safety Requirements in the REFLECT Design FlowZ. Petrov, K. Kraty, J. M. P. Cardoso, P. C. Diniz
In Proc. of the Ninth IEEE Intl. Conf. on Industrial Informatics (INDIN'2011)
2011BibTex

A Domain-Specific Language for the Specification of Adaptable Context InferenceA. C. Santos, P. C. Diniz, J. M. P. Cardoso, D. R. Ferreira
In Proc. of the Ninth IEEE/IFIP Intl. Conf. on Embedded and Ubiquitous Computing (EUC'11)
2011BibTex

Custom FPGA-based Micro-Architecture for Streaming ComputingJ. C. Alves, P. C. Diniz
In Proc. of the Southern Conf. on Programmable Logic (SPL'11)
2011BibTex

Programming Models and Development Software for a Space-Based Many-Core ProcessorS. P. Crago, D. I. Kang, R. Kost, K. Singh, J. Suh, J. P. Walters
In Fourth IEEE International Conference on Space Mission Challenges for Information Technology
2011BibTex

Multi-Core Fault Tolerance for SpaceS. P. Crago, J. P. Walters, R. Kost, K. Singh, J. Suh
In GOMACTech
2011BibTex

Software-Based Fault Tolerance for the Maestro Many-Core ProcessorJ. P. Walters, R. Kost, K. Singh, J. Suh, S. P. Crago
In IEEE Aerospace Conference
2011BibTex

FFTW and Complex Ambiguity Function Performance on the Maestro ProcessorK. Singh, J. P. Walters, J. Hestness, J. Suh, C. M. Rogers, S. P. Crago
In IEEE Aerospace Conference
2011BibTex

Experiences Using GlideinWMS and the Corral Frontend Across CyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Würthwein, B. G. Berriman, S. Callaghan
In Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011)
2011BibTex

Automating Application Deployment in Infrastructure CloudsG. Juve, E. Deelman
In 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011)
2011BibTex

A Cloud‐based Dynamic Workflow for Mass Spectrometry Data AnalysisA. Nagavaram, G. Agrawal, M. Freitas, G. Mehta, R. Mayani, E. Deelman
In Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011)
2011BibTex

Workflow Overhead Analysis and OptimizationsW. Chen, E. Deelman
In 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11)
2011BibTex

Failure Prediction and Localization in Large Scientific WorkflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Mehta, F. Silva, K. Vahi
In 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11)
2011BibTex

Online Workflow Management and Performance Analysis with StampedeD. Gunter, E. Deelman, T. Samak, C. Brooks, M. Goode, G. Juve, G. Mehta, P. Moraes, F. Silva, M. Swany, K. Vahi
In 7th International Conference on Network and Service Management (CNSM-2011)
2011BibTex

Partitioning and Scheduling Workflows across Multiple Sites with Storage ConstraintsW. Chen, E. Deelman
In 9th International Conference on Parallel Processing and Applied Mathmatics
2011BibTex

Online Fault and Anomaly Detection for Large-Scale Scientific WorkflowsT. Samak, D. Gunter, E. Deelman, G. Juve, G. Mehta, F. Silva, K. Vahi
In 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011)
2011BibTex

Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science ApplicationS. Callaghan, P. Maechling, P. Small, K. Milner, G. Juve, T. H. Jordan, E. Deelman, G. Mehta, K. Vahi, D. Gunter, K. Beattie
In International Journal of High Performance Computing Applications
2011, 274-285 pagesBibTex

Enabling Data and Compute Intensive Workflows in BioinformaticsG. Mehta, E. Deelman, J. A. Knowles, T. Chen, Y. Wang, J. - S. Vöckler, S. Buyske, T. Matise
In 2nd International Workshop onHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in conjunction with Euro-Par Conference 2011
2011BibTex

RseqFlow: Workflows for RNA-Seq Data AnalysisY. Wang, G. Mehta, R. Mayani, J. Lu, T. Souaiaia, Y. C. andrew Clark, H. J. Yoon, L. Wan, O. V. Evgrafov, J. A. Knowles, E. Deelman, T. Chen
In Bioinformatics
2011, 2598-2600 pagesBibTex

BTS: Resource Capacity Estimate for Time-targeted Science WorkflowsE. - K. Byun, Y. - S. Kee, J. - S. Kim, E. Deelman, S. Maeng
In Journal of Parallel and Distributed Computing: Special Issue on Cloud Computing
2011, 848-862 pagesBibTex

Ten years of software sustainability at the Infrared Processing and Analysis CenterB. G. Berriman, J. Good, E. Deelman, A. Alexov
In Phil. Trans. R. Soc. A
2011, 3384-3397 pagesBibTex

Wrangler: Virtual Cluster Provisioning for the CloudG. Juve, E. Deelman
In Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11)
2011BibTex

Experiences Using Cloud Computing for A Scientific Workflow ApplicationJ. - S. Vöckler, G. Juve, E. Deelman, M. Rynge, B. G. Berriman
In Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011)
2011BibTex

Exponential complexity of the quantum adiabatic algorithm for certain satisfiability problemsI. Hen, A. P. Young
In Phys. Rev. E
2011, 061152 pagesBibTex

Metrics for heterogeneous scientific workflows: A case study of an earthquake science applicationS. Callaghan, P. Maechling, P. Small, K. Milner, G. Juve, T. H. Jordan, E. Deelman, G. Mehta, K. Vahi, D. Gunter, K. Beattie, C. X. Brooks
In IJHPCA
2011, 274–285 pagesBibTex

Online workflow management and performance analysis with StampedeD. Gunter, E. Deelman, T. Samak, C. X. Brooks, M. Goode, G. Juve, G. Mehta, P. Moraes, F. Silva, M. D. Swany, K. Vahi
In 7th International Conference on Network and Service Management, CNSM 2011, Paris, France, October 24-28, 2011
2011, 1–10 pagesBibTex

Online Fault and Anomaly Detection for Large-Scale Scientific WorkflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, G. Mehta, F. Silva, K. Vahi
In 13th IEEE International Conference on High Performance Computing & Communication, HPCC 2011, Banff, Alberta, Canada, September 2-4, 2011
2011, 373–381 pagesBibTex

Failure prediction and localization in large scientific workflowsT. Samak, D. Gunter, M. Goode, E. Deelman, G. Mehta, F. Silva, K. Vahi
In WORKS'11, Proceedings of the 6th Workshop on Workflows in Support of Large-Scale Science, co-located with , SC11, Seattle, WA, USA, November 14, 2011
2011, 107–116 pagesBibTex

Experiences using cloud computing for a scientific workflow applicationJ. - S. Vöckler, G. Juve, E. Deelman, M. Rynge, B. Berriman
In Proceedings of the 2nd international workshop on Scientific cloud computing
2011, 15–24 pagesBibTex

RseqFlow: workflows for RNA-Seq data analysisY. Wang, G. Mehta, R. Mayani, J. Lu, T. Souaiaia, Y. Chen, A. P. Clark, H. J. Yoon, L. Wan, O. V. Evgrafov, J. A. Knowles, E. Deelman, T. Chen
In Bioinformatics
2011, 2598–2600 pagesBibTex

A Cloud-based Dynamic Workflow for Mass Spectrometry Data AnalysisA. Nagavaram, G. Agrawal, M. A. Freitas, K. H. Telu, G. Mehta, R. Mayani, E. Deelman
In IEEE 7th International Conference on E-Science, e-Science 2011, Stockholm, Sweden, December 5-8, 2011
2011, 47–54 pagesBibTex

Experiences using glideinWMS and the corral frontend across cyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Wurthwein, B. G. Berriman, S. Callaghan
In E-Science (e-Science), 2011 IEEE 7th International Conference on
2011, 311–318 pagesBibTex

Experiences Using GlideinWMS and the Corral Frontend across CyberinfrastructuresM. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Würthwein, B. G. Berriman, S. Callaghan
In IEEE 7th International Conference on E-Science, e-Science 2011, Stockholm, Sweden, December 5-8, 2011
2011, 311–318 pagesBibTex

2010

Merging Programming Models and On-chip Networks to Meet the Programmable and Performance Needs of Multi-core Systems on a Programmable ChipA. G. Schmidt, W. V. Kritikos, R. Sass, E. K. Anderson, M. C. French
In Reconfigurable Computing and FPGAs (ReConFig), 2010 International Conference on
2010, 334 -339 pagesBibTex

Radiation Hardening by Software for the Embedded PowerPC, Preliminary FindingsJ. P. Walters, M. Bucciero, M. C. French
In ReSpace / MAPLD Conference
2010BibTex

Autonomous On-board Processing for Sensor Systems: High Performance Fault Tolerance TechniquesM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
2010BibTex

Radiation Hardening by Software for the Embedded PowerPC, Preliminary FindingsJ. P. Walters, M. Bucciero, M. C. French
In ReSpace / MAPLD Conference
2010BibTex

Autonomous On-board Processing for Sensor Systems: High Performance Fault Tolerance TechniquesM. C. French, J. P. Walters, M. Bucceiro
In NASA Earth Science Technology Forum
2010BibTex

Redsharc: An Abstract Stream Programming Model for FPGAsW. V. Kritikos, A. G. Schmidt, R. Sass, E. K. Anderson, M. Sika, M. C. French
In Proceedings of the 18th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'10)
2010BibTex

Embedded Systems Design with Platform FPGAs: Principles & PracticesR. Sass, A. G. Schmidt
2010BibTex

Merging Programming Models and On-Chip Networks to Meet the Programmable and Performance Needs of Multi-Core Systems on a Programmable ChipA. G. Schmidt, W. V. Kritikos, R. Sass, E. K. Anderson, M. C. French
In Proceedings of the 5th Annual International Conference on Reconfigurable Computing and FPGAs (ReConFig'10)
2010, 334–339 pagesBibTex

Impact of Reconfigurable Hardware on Accelerating MPI_ReduceS. Gao, A. G. Schmidt, R. Sass
In Proceedings of the 9th Annual International Conference on Field Programmable Technology (FPT'10)
2010, 29–36 pagesBibTex

Investigating Resilient High Performance Reconfigurable Computing with Minimally-Invasive System MonitoringB. Huang, A. G. Schmidt, A. A. Mendon, R. Sass
In International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA'10)
2010, 1–8 pagesBibTex

Productively Scaling I/O Bound Streaming Applications with a Cluster of FPGAsA. G. Schmidt, S. Datta, A. A. Mendon, R. Sass
In Symposium on Application Accelerators in High-Performance Computing (SAAHPC'10)
2010BibTex

Applying Graphics Processor Units to Monte Carlo Dose Calculation in Radiation TherapyM. Bakhtiari, H. Malhotra, M. D. Jones, V. Chaudhary, J. P. Walters, D. Nazareth
In Journal of medical physics/Association of Medical Physicists of India
2010, 120 pagesBibTex

Database Searching with Profile-Hidden Markov Models on Reconfigurable and Many-Core ArchitecturesJ. P. Walters, V. Chaudhary, B. Schmidt
In Bioinformatics: high performance parallel computer architectures
2010, 203 pagesBibTex

Computation Checkpointing and MigrationV. Chaudhary, J. P. N. Walters, H. Jiang
2010BibTex

Failure Prediction for Artificial Lift SystemsY. Liu, K. - T. Yao, S. Liu, C. S. Raghavendra, T. L. Lenz, L. Olabinjo, B. Seren, S. Seddighrad, C. G. D. Babu
In SPE Western Regional Meeting
2010BibTex

Hybrid Constrained Nonlinear Optimization to Injector-Producer Relationships in Oil FieldsH. Lee, K. - T. Yao, O. O. Okpani, A. Nakano, I. Ershaghi
In International Journal of Computer Science
2010BibTex

Identifying Injector-Producer Relationship in Waterflood Using Hybrid Constrained Nonlinear OptimizationH. Lee, K. - T. Yao, O. O. Okpani, A. Nakano, I. Ershaghi
In SPE Western Regional Meeting
2010BibTex

Dynamic structure Learning of Factor Graphs and Parameter Estimation of a Constrained Nonlinear Predictive Model for Oilfield OptimizationH. Lee, K. - T. Yao, A. Nakano
In Proceedings of the 2010 International Conference on Artificial Intelligence
2010BibTex

Compiling for Reconfigurable Computing: A SurveyJ. M. P. Cardoso, P. C. Diniz, M. Weinhardt
In ACM Computing Surveys
2010BibTex

Preprocessing Techniques for Context Recognition from Accelerometer DataD. Figo, P. C. Diniz, D. R. Ferreira, J. M. P. Cardoso
In Personal and Ubiquitous Computing
2010BibTex

Opportunities for concurrent dynamics analysis with explicit inter-core communicationJ. Ha, S. P. Crago
In ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering (PASTE)
2010BibTex

Wings: Intelligent Workflow-Based Design of Computational ExperimentsY. Gil, V. Ratnakar, E. Deelman, et al
In IEEE Intelligent Systems
2010BibTex

Bridging The Gap Between Business And Scientific WorkflowsM. Sonntag, D. Karastoyanova, E. Deelman
In e-Science 2010
2010BibTex

The Application of Cloud Computing to Astronomy: A Study of Cost and PerformanceB. G. Berriman, G. Juve, E. Deelman, M. Regelson, P. Plavchan
In In Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010)
2010BibTex

Mapping Workflows on Grid Resources: Experiments with the Montage WorkflowR. Sakellariou, H. Zhao, E. Deelman
In Grids, P2P and Services Computing
2010, 119-132 pagesBibTex

BPEL4Pegasus: Combining Business and Scientific WorkflowsM. Sonntag, D. Karastoyanova, E. Deelman
In International Conference on Service-Oriented Computing (ICSOC)
2010BibTex

Exploiting the Cloud of Computing Environments: An Application's PerspectiveR. Bolze, E. Deelman
In Cloud Computing and Software Services: Theory and Techniques
2010BibTex

CyberShake: A Physics-Based Seismic Hazard Model for Southern CaliforniaR. Graves, T. Jordan, S. Callaghan, E. Deelman, E. Field, G. Juve, C. Kesselman, P. Maechling, G. Mehta, K. Milner, D. Okaya, P. Small, K. Vahi
In Pure and Applied Geophysics
2010BibTex

Experiences with Resource Provisioning for Scientific Workflows Using CorralG. Juve, E. Deelman, K. Vahi, G. Mehta
In Scientific Programming
2010, 77-92 pagesBibTex

The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their ProvenanceB. G. Berriman, E. Deelman, P. Groth, G. Juve
In SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy
2010BibTex

Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, P. J. Maechling
In 22nd IEEE/ACM Conference on Supercomputing (SC10)
2010BibTex

Scaling up Workflow-based ApplicationsS. Callaghan, E. Deelman, D. Gunter, G. Juve, P. Maechling, C. Brooks, K. Vahi, K. Milner, R. Graves, E. Field, D. Okaya, T. Jordan
In Journal of Computer and System Sciences
2010, 428-446 pagesBibTex

Parameterized Specification, Configuration and Execution of Data-intensive Scientific WorkflowsV. S. Kumar, T. Kurc, V. Ratnakar, J. Kim, G. Mehta, K. Vahi, Y. L. Nelson, P. Sadayappan, E. Deelman, Y. Gil, M. Hall, J. Saltz
In Cluster Computing Journal
2010, 315-333 pagesBibTex

Scientific Workflows and CloudsG. Juve, E. Deelman
In ACM Crossroads
2010, 14-18 pagesBibTex

Scientific Workflows in the CloudG. Juve, E. Deelman
In Grids, Clouds and Virtualization
2010, 71–91 pagesBibTex

Planning to Discover and Counteract Attacks, InformaticaT. Kichkaylo, T. Ryutov, M. Orosz, R. Neches
In 34
2010BibTex

�PortSec: A Port Security Risk Analysis and Resources Allocation System, � in Proceedings of the IEEE International Conference on Technologies for Homeland Security http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5655M. D. Orosz, C. Southwell, A. Barrett, J. Chen, P. Ioannou, A. Afshin, I. Maya
2010BibTex

Parameterized specification, configuration and execution of data-intensive scientific workflowsV. S. Kumar, T. M. Kurç, V. Ratnakar, J. Kim, G. Mehta, K. Vahi, Y. -, P. Sadayappan, E. Deelman, Y. Gil, M. W. Hall, J. H. Saltz
In Cluster Computing
2010, 315–333 pagesBibTex

Scientific Workflow Applications on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
In CoRR
2010BibTex

Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
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Scaling up workflow-based applicationsS. Callaghan, E. Deelman, D. Gunter, G. Juve, P. Maechling, C. X. Brooks, K. Vahi, K. Milner, R. Graves, E. Field, D. Okaya, T. H. Jordan
In J. Comput. Syst. Sci.
2010, 428–446 pagesBibTex

Experiences with resource provisioning for scientific workflows using CorralG. Juve, E. Deelman, K. Vahi, G. Mehta
In Scientific Programming
2010, 77–92 pagesBibTex

Data Sharing Options for Scientific Workflows on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. G. Berriman, B. P. Berman, P. Maechling
In Conference on High Performance Computing Networking, Storage and Analysis, SC 2010, New Orleans, LA, USA, November 13-19, 2010
2010, 1–9 pagesBibTex

2009

Real-time support on IEEE 802.11 Wireless Ad-Hoc Networks: Reality vs. TheoryM. Kang, D. - I. Kang, J. Suh
In IEICE Transactions on Communications
2009, 737-744 pagesBibTex

MPI Performance Analysis and Optimization on Tile64/MaestroM. Kang, E. Park, M. Cho, J. Suh, D. - I. Kang, S. P. Crago
In Workshop on Multi-core Processors for Space - Opportunities and Challenges
2009BibTex

Run-time Monitor (RTM)M. Kang, I. Cho, D. - I. Kang, S. P. Crago, S. Bhatt, I. Choi, X. Yang, M. -ju Wu, D. Yeung
In Workshop on Multi-core Processors for Space - Opportunities and Challenges
2009BibTex

AIREN: A Novel Integration of On-Chip and Off-Chip FPGA NetworksA. G. Schmidt, W. V. Kritikos, R. R. Sharma, R. Sass
In Proceedings of the 17th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'09)
2009, 271–274 pagesBibTex

A Hardware Filesystem Implementation with Multi-Disk SupportA. Mendon, A. G. Schmidt, R. Sass
In International Journal of Reconfigurable Computing
2009BibTex

Initial Implementation of a Hardware File System with Multiple Disk SupportA. Mendon, A. G. Schmidt, R. Sass
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2009BibTex

Hardware Implementation of MPI_Barrier on an FPGA ClusterS. Gao, A. G. Schmidt, R. Sass
In Proceedings of the 19th Annual Conference on Field Programmable Logic and Applications (FPL'09)
2009, 12-17 pagesBibTex

Replication-Based Fault Tolerance for MPI ApplicationsJ. P. Walters, V. Chaudhary
In Parallel and Distributed Systems, IEEE Transactions on
2009, 997–1010 pagesBibTex

Evaluating the Use of GPUs in Liver Image Segmentation and HMMER Database SearchesJ. P. Walters, V. Balu, S. Kompalli, V. Chaudhary
In Parallel & Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on
2009, 1–12 pagesBibTex

A Fault-Tolerant Strategy for Virtualized HPC ClustersJ. P. Walters, V. Chaudhary
In The Journal of Supercomputing
2009, 209–239 pagesBibTex

Improving MPI-HMMER's Scalability with Parallel I/OJ. P. Walters, R. Darole, V. Chaudhary
In Parallel & Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on
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Data Analysis for Massively Distributed SimulationsK. - T. Yao, R. F. Lucas, C. E. Ward, G. Wagenbreth, T. D. Gottschalck
In Interservice/Industry Training, Simulation, and Education Conference (I/ITSEC) 2009
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Mission-Critical Space Software for Multi-Core ProcessorsS. P. Crago
In Workshop on Flight Software
2009BibTex

Maestro Multi-Core SoftwareS. P. Crago
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Integrated Development Environment and Parallel Performance Analysis Tools for Tile 64/ MaestroK. Singh, R. Kost, K. Yoo, K. Parker, S. P. Crago
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2009BibTex

Adaptive Workflow Processing and Execution in PegasusK. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta
In Concurrency and Computation: Practice and Experience
2009, 1965-1981 pagesBibTex

Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed EnvironmentsE. Deelman
In International Journal of High Performance Computing Applications
2009BibTex

Scientific Workflow Applications on Amazon EC2G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, P. J. Maechling
In Workshop on Cloud-based Services and Applications
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Pipeline-Centric Provenance ModelP. Groth, E. Deelman, G. Juve, G. Mehta, B. Berriman
In 4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09)
2009BibTex

An Integrated Framework for Performance-based Optimization of Scientific WorkflowsV. S. Kumar, P. Sadayappan, G. Mehta, K. Vahi, E. Deelman, V. Ratnakar, J. Kim, Y. Gil, M. W. Hall, T. M. Kurç, J. H. Saltz
In Conference on High Performance and Distributed Computing (HPDC)
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Mapping Workflows on Grid Resources: Experiments with the Montage WorkflowR. Sakellariou, H. Zhao, E. Deelman
In CoreGrid
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�PortSec: Port Security Risk Management and Resources Allocation System, � in Proceedings of the 12th IFAC Symposium on Control in Transportation Systems, (CTS'09), Redondo Beach, CAM. D. Orosz, C. Southwell, A. Barrett, O. Bakir, J. Chen, I. Maya
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An integrated framework for performance-based optimization of scientific workflowsV. S. Kumar, P. Sadayappan, G. Mehta, K. Vahi, E. Deelman, V. Ratnakar, J. Kim, Y. Gil, M. W. Hall, T. M. Kurç, J. H. Saltz
In Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, HPDC 2009, Garching, Germany, June 11-13, 2009
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Building Solutions for Researchers with a Science GatewayJ. McGee, J. Reilly, M. Rynge
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2008

Autonomous System on a Chip Adaptation through Partial Runtime ReconfigurationM. C. French, E. Anderson, D. - I. Kang
In Field-Programmable Custom Computing Machines, 2008. FCCM '08. 16th International Symposium on
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System on a Programmable Chip Adapation Through Active Partial ReconfigurationE. Anderson, D. - I. Kang, M. C. French
In The International Conference on Engineering of Reconfigurable Systems and Algorithms
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An Energy-Efficient Real-Time Scheduling Scheme on Dual Channel NetworksM. Kang, D. - I. Kang, J. Suh, J. Lee
In Information Sciences
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Teaching FPGA System Design via a Remote Laboratory FacilityY. Rajasekhar, W. V. Kritikos, A. G. Schmidt, R. Sass
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FPGA Session Control (FSC): Providing Remote Access to A Cluster of FPGAsY. Rajasekhar, Y. Phatak, A. G. Schmidt, W. V. Kritikos, R. Sass
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Reconfigurable Computing Cluster Project: Phase I BriefA. G. Schmidt, W. V. Kritikos, S. Datta, R. Sass
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A Comparison of Virtualization Technologies for HPCJ. P. Walters, V. Chaudhary, M. Cha, S. Guercio, S. Gallo
In Advanced Information Networking and Applications, 2008. AINA 2008. 22nd International Conference on
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Enabling Interactive Jobs in Virtualized Data CentersJ. P. Walters, B. Bantwal, V. Chaudhary
In Cloud Computing and Its Applications
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Optimized Cluster-Enabled HMMER SearchesJ. P. Walters, J. Landman, V. Chaudhary
In Grid computing for bioinformatics and computational biology
2008, 51–70 pagesBibTex

A High Performance Route-Planning Technique for Dense Urban simulationsJ. J. Tran, K. - T. Yao, G. Wagenbreth, D. M. Davis, R. F. Lucas, D. J. Bakeman
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Modeling Human Perception of Situation Awareness During Constructive ExperimentationP. Colon, J. Tran, K. - T. Yao, M. Anhalt, J. Curiel
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Advanaced Microprocessor ArchitecturesJ. McMahon, S. P. Crago, D. Yeung
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Resource Provisioning Options for Large-Scale Scientific WorkflowsG. Juve, E. Deelman
In Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)
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Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShakeS. Callaghan, P. Maechling, E. Deelman, K. Vahi, G. Mehta, G. Juve, K. Milner, R. Graves, E. Field, D. Okaya, D. Gunter, K. Beattie, T. Jordan
In Fourth IEEE International Conference on e-Science (e-Science 2008)
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On the Use of Cloud Computing for Scientific WorkflowsC. Hoffa, G. Mehta, T. Freeman, E. Deelman, K. Keahey, B. Berriman, J. Good
In 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)
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Characterization of Scientific WorkflowsS. Bharathi, A. Chervenak, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
In 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08)
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Workflows and e-Science: An Overview of Workflow System Features and CapabilitiesE. Deelman, D. Gannon, M. Shields, I. Taylor
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Data Management Challenges of Data-Intensive Scientific WorkflowsE. Deelman, A. Chervenak
In 3rd International Workshop on Workflow Systems in e-Science (WSES 08), in conjunction with CCGrid 2008
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The Cost of Doing Science on the Cloud: The Montage ExampleE. Deelman, G. Singh, M. Livny, B. Berriman, J. Good
In Supercomputing 2008
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Adaptive Workflow Processing and Execution in PegasusK. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta
In 3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08)
2008BibTex

Provenance: The Bridge Between Experiments and DataS. Miles, P. Groth, E. Deelman, K. Vahi, G. Mehta, L. Moreau
In Computing in Science and Engineering
2008, 38-46 pagesBibTex

Workflow Task Clustering for Best Effort Systems with PegasusG. Singh, M. - H. Su, K. Vahi, E. Deelman, B. Berriman, J. Good, D. S. Katz, G. Mehta
In Mardi Gras Conference
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Provenance: The Bridge Between Experiments and DataS. Miles, P. T. Groth, E. Deelman, K. Vahi, G. Mehta, L. Moreau
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2008, 38–46 pagesBibTex

Estimating Resource Needs for Time-Constrained WorkflowsE. -, Y. -, E. Deelman, K. Vahi, G. Mehta, J. -
In Fourth International Conference on e-Science, e-Science 2008, 7-12 December 2008, Indianapolis, IN, USA
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Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShakeS. Callaghan, P. Maechling, E. Deelman, K. Vahi, G. Mehta, G. Juve, K. Milner, R. Graves, E. Field, D. Okaya, D. Gunter, K. Beattie, T. H. Jordan
In Fourth International Conference on e-Science, e-Science 2008, 7-12 December 2008, Indianapolis, IN, USA
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Workflow task clustering for best effort systems with PegasusG. Singh, M. -, K. Vahi, E. Deelman, B. G. Berriman, J. Good, D. S. Katz, G. Mehta
In Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key c
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2007

A Low Power Real-Time Packet Scheduling Scheme on Wireless Local Area NetworksM. Kang, D. - I. Kang, J. Suh, J. Lee
In IEICE Transactions on Communications
2007, 3501-3504 pagesBibTex

Design of a reliable real-time scheduling policy for dual-channel networksJ. Lee, M. Kang, G. - L. Park, S. Y. Shin
In Journal of Information Science and Engineering
2007, 1407-1419 pagesBibTex

Characterizing Effective Memory Bandwidth of Designs with Concurrent High-Performance Computing CoresA. G. Schmidt, R. Sass
In Proceedings of the 17th Annual International Conference on Field Programmable Logic and Applications (FPL'07)
2007, 601–604 pagesBibTex

Reconfigurable Computing Cluster (RCC) Project: Investigating the Feasibility of FPGA-Based Petascale ComputingR. Sass, W. V. Kritikos, A. G. Schmidt, S. Beeravolu, P. Beeraka, K. Datta, D. Andrews, R. S. Miller, J. Daniel Stanzione
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2007, 127–140 pagesBibTex

Quantifying Effective Memory Bandwidth of Platform FPGAsA. G. Schmidt, R. Sass
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2007, 337–338 pagesBibTex

Wireless Sensor Network Security: A SurveyJ. P. Walters, Z. Liang, W. Shi, V. Chaudhary
In Security in distributed, grid, mobile, and pervasive computing
2007, 367 pagesBibTex

MPI-HMMER-Boost: Distributed FPGA AccelerationJ. P. Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B. Schmidt, D. Nathan, J. Landman
In The Journal of VLSI Signal Processing
2007, 223–238 pagesBibTex

A Scalable Asynchronous Replication-Based Strategy for Fault Tolerant MPI ApplicationsJ. Walters, V. Chaudhary
In High Performance Computing, HiPC 2007
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Failure Prediction and Scalable Checkpointing for Reliable Large-Scale Grid ComputingB. Rood, J. P. Walters, V. Chaudhary, M. J. Lewis
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Fault-Tolerant Techniques for High Performance Computing and a Bioinformatics ApplicationJ. P. N. Walters
2007BibTex

Modeling Human Perception of Situation Awareness During Constructive ExperimentationP. Colon, M. Anhalt, J. Curiel, K. - T. Yao, J. Tran
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2007BibTex

Preliminary Study toward Intelligent Run-time Resource Management Techniques for Large Multi-Core ArchitecturesD. I. Kang, J. Suh, J. O. McMahon, S. P. Crago
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2007BibTex

Optimization of Memory Allocation in VSIPLJ. Suh, J. O. McMahon, D. I. Kang, S. P. Crago
In High Performance Embedded Computing (HPEC), Poster Session
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Pegasus: Mapping Large-Scale Workflows to Distributed ResourcesE. Deelman, G. Mehta, G. Singh, M. - H. Su, K. Vahi
In Workflows for e-Science
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Generating Complex Astronomy WorkflowsB. G. Berriman, E. Deelman, J. Good, J. C. Jacob, D. S. Katz, A. C. Laity, T. A. Prince, G. Singh, M. - H. Su
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SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis CalculationsP. Maechling, E. Deelman, L. Zhao, R. Graves, G. Mehta, N. Gupta, J. Mehringer, C. Kesselman, S. Callaghan, D. Okaya, H. Francoeur, V. Gupta, Y. Cui, K. Vahi, T. Jordan, E. Field
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Examining the Challenges of Scientific WorkflowsY. Gil, E. Deelman, M. Ellisman, T. Fahringer, G. Fox, D. Gannon, C. Goble, M. Livny, L. Moreau, J. Myers
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2007, 24-32 pagesBibTex

Connecting Scientific Data to Scientific Experiments with ProvenanceS. Miles, E. Deelman, P. Groth, K. Vahi, G. Mehta, L. Moreau
In Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007)
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Provenance Trails in the Wings/Pegasus Workflow SystemJ. Kim, E. Deelman, Y. Gil, G. Mehta, V. Ratnakar
In Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge
2007BibTex

Data Placement for Scientific Applications in Distributed EnvironmentsA. Chervenak, E. Deelman, M. Livny, M. - H. Su, R. Schuler, S. Bharathi, G. Mehta, K. Vahi
In Proceedings of Grid Conference 2007
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Optimizing Workflow Data FootprintG. Singh, K. Vahi, A. Ramakrishnan, G. Mehta, E. Deelman, H. Zhao, R. Sakellariou, K. Blackburn, D. Brown, S. Fairhurst, D. Meyers, B. G. Berriman
In Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling
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Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational WorkflowsY. Gil, V. Ratnakar, E. Deelman, G. Mehta, J. Kim
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Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus ExampleN. Mandal, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
In Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS07)
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Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed ResourcesA. Ramakrishnan, G. Singh, H. Zhao, E. Deelman, R. Sakellariou, K. Vahi, K. Blackburn, D. Meyers, M. Samidi
In Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid)
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�Mixed-initiative planning for space exploration missions, � in Proceedings of the ICAPS�07 Workshop on Moving, Planning and Scheduling, International Conference on Automated Planning and Scheduling, Providence, RIT. Kichkaylo, V. Buskirk, S. C., N. S., O. H., M., R. Neches
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Optimizing workflow data footprintG. Singh, K. Vahi, A. Ramakrishnan, G. Mehta, E. Deelman, H. Zhao, R. Sakellariou, K. Blackburn, D. Brown, S. Fairhurst, D. Meyers, B. G. Berriman, J. Good, D. S. Katz
In Scientific Programming
2007, 249–268 pagesBibTex

Scheduling Data-IntensiveWorkflows onto Storage-Constrained Distributed ResourcesA. Ramakrishnan, G. Singh, H. Zhao, E. Deelman, R. Sakellariou, K. Vahi, K. Blackburn, D. Meyers, M. Samidi
In Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 14-17 May 2007, Rio de Janeiro, Brazil
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Connecting Scientific Data to Scientific Experiments with ProvenanceS. Miles, E. Deelman, P. T. Groth, K. Vahi, G. Mehta, L. Moreau
In Third International Conference on e-Science and Grid Computing, e-Science 2007, 10-13 December 2007, Bangalore, India
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Data placement for scientific applications in distributed environmentsA. L. Chervenak, E. Deelman, M. Livny, M. -, R. Schuler, S. Bharathi, G. Mehta, K. Vahi
In 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), September 19-21, 2007, Austin, Texas, USA, Proceedings
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Integrating existing scientific workflow systems: the Kepler/Pegasus exampleN. Mandal, E. Deelman, G. Mehta, M. -, K. Vahi
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2006

Power Visualization, Analysis, and Optimization Tools for FPGAsM. C. French, L. Wang, M. Wirthlin
In Proceedings of the 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines
2006, 185–194 pagesBibTex

FPGA dynamic power minimization through placement and routing constraintsL. Wang, M. C. French, A. Davoodi, D. Agarwal
In EURASIP J. Embedded Syst.
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Tolerating SEU Faults in the Raw ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
In 3rd International Workshop on Dependable Embedded Systems
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An Evaluation of Software Fault Tolerance Techniques on a Tiled ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
In 9th Annual International Conference on Military and Aerospace Programmable Logic Devices
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Reducing Power Consumption of Radiation Mitigated Designs for FPGAsM. C. French, L. Wang, M. Wirthlin, P. Graham
In 9th Annual International Conference on Military and Aerospace Programmable Logic Devices
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Cross Functional Design Tools for Radiation Mitigation and Power Optimization of FPGA CircuitsM. C. French, P. Graham, M. Wirthlin, G. Larchev, L. Wang
In NASA Earth Science Technology Conference
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FPGA dynamic power minimization through placement and routing constraintsL. Wang, M. C. French, A. Davoodi, D. Agarwal
In EURASIP J. Embedded Syst.
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Tolerating SEU Faults in the Raw ArchitectureK. Singh, A. Agbaria, D. - I. Kang, M. C. French
In 3rd International Workshop on Dependable Embedded Systems
2006BibTex

Accelerating the HMMER Sequence Analysis Suite Using Conventional ProcessorsJ. P. Walters, B. Qudah, V. Chaudhary
In Advanced Information Networking and Applications, 2006. AINA 2006. 20th International Conference on
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Application-Level Checkpointing Techniques for Parallel ProgramsJ. P. Walters, V. Chaudhary
In Distributed Computing and Internet Technology
2006, 221–234 pagesBibTex

Accelerating HMMer Searches on Opteron Processors with Minimally Invasive RecodingJ. Landman, J. Ray, J. P. Walters
In Advanced Information Networking and Applications, 2006. AINA 2006. 20th International Conference on
2006, 5–pp pagesBibTex

An Adaptive Heterogeneous Software DSMJ. P. Walters, H. Jiang, V. Chaudhary
In Parallel Processing Workshops, 2006. ICPP 2006 Workshops. 2006 International Conference on
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Data Conversion for Heterogeneous Migration/CheckpointingH. Jiang, V. Chaudhary, J. P. Walters
In High-performance computing: paradigm and infrastructure
2006, 241 pagesBibTex

Mega-scale fabrication by contour craftingB. Khoshnevis, D. Hwang, K. - T. Yao, Z. Yeh
In International Journal of Industrial and Systems Engineering
2006BibTex

Supercomputing's Role in Data Problems and Its Contribution to SolutionsK. - T. Yao, D. Davis, R. Lucas, P. Amburn
In The ITEA Journal of Test and Evaluation
2006, 53-59 pagesBibTex

Agile Data Logging and Analysis for Large-Scale SimulationsK. - T. Yao, G. Wagenbreth, C. Ward
In Interservice/Industry Training, Simulation, and Education Conference (I/ITSEC) 2006
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Design and Evaluation of Hierarchical Decoupled ArchitectureW. W. Ro, S. P. Crago, A. M. Despain, J. L. Gaudiot
In The Journal of Supercomputing
2006, 237-259 pagesBibTex

CEARCH: Cognition Enabled ArchitectureS. P. Crago, J. O. McMahon, C. Archer, K. Asanovic, R. Chaung, K. Goolsbey, M. Hall, C. Kozyrakis, K. Olukotun, U. J. OÕReilly, Pancoast, V. Prasanna, R. Rabbah, S. Ward, D. Yeung
In Proceedings of the Tenth Annual High Performance Embedded Computing Workshop
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Workflows for e-ScienceI. Taylor, E. Deelman, D. Gannon, M. Shield
2006BibTex

Kickstarting Remote ApplicationsJ. - S. Vöckler, G. Mehta, Y. Zhao, E. Deelman, M. Wilde
In Second International Workshop on Grid Computing Environments (GCE06)
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Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and ChallengesE. Deelman, Y. Gil
In Workflows in e-Science
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Application-level Resource Provisioning on the GridG. Singh, C. Kesselman, E. Deelman
In e-Science 2006
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Enabling Parallel Scientific Applications with Workflow ToolsA. Lathers, M. - H. Su, A. Kulungowski, A. W. Lin, G. Mehta, S. T. Peltier, E. Deelman, M. H. Ellisman
In Proceedings of Challenges of Large Applications in Distributed Environments (CLADE)
2006BibTex

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake ExampleE. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, L. Zhao
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Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data SystemV. Nefedova, R. Jacob, I. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M. - H. Su, K. Vahi
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�Tracking Logistical Constraints Across Missions and Organizations: A Multipurpose Information Infrastructure, � in Proceedings of 2nd Annual IEEE Conference on Space Mission Challenges for Information Technologies (SMC-IT 2006), Pasadena, CA, 17-20M. Orosz, T. Kichkaylo, E. Balaban, A. Goforth, A. Sweet, R. Neches
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�Planning to Explore: Using a Coordinated Multisource Infrastructure to Overcome Present and Future Space Flight Planning Challenges, � in Proceedings of AAAI 2006 Spring Symposium on Distributed Plan and Schedule Management, Technical Report SS-06-04E. Balaban, M. Orosz, T. Kichkaylo, A. Goforth, A. Sweet, R. Neches
2006, 9–16 pagesBibTex

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance Tracking: The CyberShake ExampleE. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, L. Zhao
In Second International Conference on e-Science and Grid Technologies (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands
2006, 14 pagesBibTex

Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data SystemV. Nefedova, R. L. Jacob, I. T. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M. -, K. Vahi
In Second International Conference on e-Science and Grid Technologies (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands
2006, 32 pagesBibTex

Pegasus and DAGMan From Concept to Execution: Mapping Scientific Workflows onto Today's CyberinfrastructureE. Deelman, M. Livny, G. Mehta, A. Pavlo, G. Singh, M. -, K. Vahi, K. R. Wenger
In High Performance Computing and Grids in Action - Selected Papers from the 2006 International Advanced Research Workshop on High Performance Computing and Grids, Cetraro, Italy, 2006.
2006, 56–74 pagesBibTex

2005

Post Synthesis Level Power Modeling of FPGAsM. C. French, L. Wang, T. Anderson, M. Wirthlin
In Proceedings of the 13th Annual IEEE Symposium on Field-Programmable Custom Computing Machines
2005, 281–282 pagesBibTex

Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen
In Goverment Microcircuit Applications and Critical Technology Conference
2005BibTex

Integrated Tool Suite for Post Synthesis FPGA Power Consumption AnalysisM. C. French, L. Wang, M. Wirthlin
In 8th Annual International Conference on Military and Aerospace Programmable Logic Devices
2005BibTex

Radiation Mitigation and Power Optimization Design Tools for Reconfigurable Hardware in OrbitM. C. French, P. Graham, M. Wirthlin, G. Larchev, L. Wang
In NASA Earth Science Technology Conference
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Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen
In Goverment Microcircuit Applications and Critical Technology Conference
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Simulation Data Grid: Joint Experimentation Data Management and AnalysisK. - T. Yao, G. Wagenbreth
In Interservice/Industry Training, Simulation, and Education Conference (I/ITSEC) 2005
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Developing Situation Awareness Metrics in a Synthetic Battlespace EnvironmentJ. M. Curiel, M. D. Anhalt, J. J. Tran, K. - T. Yao
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Enabling 1,000,000-Entity Simulation on Distributed Linux ClustersG. Wagenbreth, K. - T. Yao, D. M. Davis, R. F. Lucas, T. D. Gottschalk
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The Road to Successful Joint Experimentation Starts at the Data Collection Trail - Part IIR. J. Graebener, G. Rafuse, R. Miller, K. - T. Yao
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A Register Allocation Algorithm in the Presence of Scalar Replacement for Fine-Grain Configurable ArchitectureN. Baradaran, P. C. Diniz
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Implementations of Signal Processing Kernel using Stream Virtual Machine for Raw ProcessorsJ. Suh, S. P. Crago, D. I. Kang, J. O. McMahon
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Implementation of an Embedded DoD VSIPL Application on the SARPA Polymorphous Computing Architecture (PCA) Raw ProcessorJ. Cook, S. P. Crago, L. Morda, R. Pancoast, J. Suh
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Multiprocessor Performance for Polymorphous Computing SystemsS. P. Crago, M. C. French, J. Suh, C. Chen, D. P. Campbell
In Government Microcircuit Applications and Critical Technology Conference (GOMAC)
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Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed SystemsE. Deelman, G. Singh, M. - H. Su, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, B. G. Berriman, J. Good, A. Laity, J. C. Jacob, D. S. Katz
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Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling EnvironmentP. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C. Kesselman, J. Kim, G. Mehta, B. Mendenhall, T. A. Russ, G. Singh, M. Spraragen, G. Staples, K. Vahi
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2005, 24-30 pagesBibTex

Task Scheduling Strategies for Workflow-based Applications in GridsJ. Blythe, S. Jain, E. Deelman, Y. Gil, K. Vahi, A. Mandal, K. Kennedy
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Optimizing Grid-Based Workflow ExecutionG. Singh, C. Kesselman, E. Deelman
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The Pegasus Portal: Web Based Grid ComputingG. Singh, E. Deelman, G. Mehta, K. Vahi, M. - H. Su, B. G. Berriman, J. Good, J. C. Jacob, D. S. Katz, A. Lazzarini, K. Blackburn, S. Koranda
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Comparison of Two Methods for Building Astronomical Image Mosaics on a GridD. S. Katz, J. C. Jacob, B. G. Berriman, J. Good, A. C. Laity, E. Deelman, C. Kesselman, G. Singh, M. - H. Su, T. A. Prince
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�Attaining program affordability through integration of logistical operations and health maintenance, � in Proceedings of 2005 AIAA 1st Space Exploration Conference: Continuing the Voyage of Discovery, OrlandoA. Goforth, G. Karsai, M. Orosz, R. Neches, P. Szekely, N. Ashish
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Pegasus: A framework for mapping complex scientific workflows onto distributed systemsE. Deelman, G. Singh, M. -, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, B. G. Berriman, J. Good, A. C. Laity, J. C. Jacob, D. S. Katz
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2005, 219–237 pagesBibTex

Performance Prediction-based versus Load-based Site Selection: Quantifying the DifferenceS. -, V. E. Taylor, X. Wu, M. Prajugo, E. Deelman, G. Mehta, K. Vahi
In Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, September 12-14, 2005 Imperial Palace Hotel, Las Vegas, Nevada, USA
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Task scheduling strategies for workflow-based applications in gridsJ. Blythe, S. Jain, E. Deelman, Y. Gil, K. Vahi, A. Mandal, K. Kennedy
In 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 9-12 May, 2005, Cardiff, UK
2005, 759–767 pagesBibTex

The Pegasus portal: web based grid computingG. Singh, E. Deelman, G. Mehta, K. Vahi, M. -, B. G. Berriman, J. Good, J. C. Jacob, D. S. Katz, A. Lazzarini, K. Blackburn, S. Koranda
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Embedding community-specific resource managers in general-purpose grid infrastructureI. Foster, K. Keahey, C. Kesselman, E. Laure, M. Livny, S. Martin, M. Rynge, G. Singh
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2005BibTex

2004

A Power Efficient Image Convolution Engine for Field Programmable Gate ArraysM. C. French
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Design Tools for Reconfigurable Hardware in Orbit (RHinO)M. C. French, P. Graham, M. Wirthlin, G. Larchev, P. Bellows
In NASA Earth Science Technology Conference
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Novel Signal Processing Architectures for Knowledge-based STAP Algorithms)M. C. French, J. Suh, S. P. Crago
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2004, xxvii+627 pagesBibTex

A Power Efficient Image Convolution Engine for Field Programmable Gate ArraysM. C. French
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Design Tools for Reconfigurable Hardware in Orbit (RHinO)M. C. French, P. Graham, M. Wirthlin, G. Larchev, P. Bellows
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The Road to Successful Joint Experimentation Starts at the Data Collection Trail - Part IIR. J. Graebener, G. Rafuse, R. Miller, K. - T. Yao
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An interdisciplinary approach to the study of battlefield simulation systemsJ. J. Tran, J. M. Curiel, K. - T. Yao
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Extending the Applicability of Scalar Replacement to Multiple Induction VariablesN. Baradaran, P. Diniz, J. Park
2004BibTex

Compiler Reuse Analysis for the Mapping of Data in FPGAs with RAM BlocksN. Baradaran, P. Diniz, J. Park
In Proc. 2004 IEEE Intl. Conf. on Field-Programmable Technology (FPT'04)
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Novel Signal Processing Architectures for Knowledge-based STAP AlgorithmsM. C. French, J. Suh, S. P. Crago, J. Damoulakis
In IEEE Radar Conference
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Artificial Intelligence and Grids: Workflow Planning and BeyondY. Gil, E. Deelman, J. Blythe, C. Kesselman, H. Tangmurarunkit
In IEEE Intelligent Systems
2004BibTex

Pegasus: Mapping Scientific Workflows onto the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. - H. Su, K. Vahi, M. Livny
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Pegasus: Mapping Scientific Workflows onto the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. -, K. Vahi, M. Livny
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2003

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In Proceedings of the 30th annual international symposium on Computer architecture
2003, 410–421 pagesBibTex

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In SIGARCH Comput. Archit. News
2003, 410–421 pagesBibTex

Applications of adaptive computing systems for signal processing challengesB. Schott, P. Bellows, M. C. French, R. Parker
In Proceedings of the 2003 Asia and South Pacific Design Automation Conference
2003, 465–470 pagesBibTex

A performance analysis of PIM, stream processing, and tiled processing on memory-intensive signal processing kernelsJ. Suh, E. - G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In SIGARCH Comput. Archit. News
2003, 410–421 pagesBibTex

Data Conversion for Process/Thread Migration and CheckpointingH. Jiang, V. Chaudhary, J. P. Walters
In Parallel Processing, 2003. Proceedings. 2003 International Conference on
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Data Search and Reorganization using FPGAs: Application to Spatial Pointer-based Data StructuresP. Diniz, J. Park
2003BibTex

Synthesis and Estimation of Memory Interfaces for FPGA-based Reconfigurable Computing EnginesJ. Park, P. Diniz
In FCCM2003
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A Compiler Apporach to Performance Prediction using Emprical-based ModelingP. Diniz, J. Park
In In Proc. of the 2003 Workshop on Performance Modeling and Analysis (PMA'03), published as Lecture Notes on Computer Science (LNCS 2659)
2003, 916-925 pagesBibTex

Increasing the Accuracy of Shape and Safety Analysis for Pointer-based CodesP. Diniz
2003BibTex

Dynamic Power Management of Heterogeneous SystemsJ. Suh, D. Kang, S. P. Crago
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A Performance Analysis of PIM, Stream Processing and Tiled Processing on Memory-Intensive Signal Processing KernelsJ. Suh, E. G. Kim, S. P. Crago, L. Srinivasan, M. C. French
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Robust Highly-Connected Direct Interconnection Network TopologiesI. Sharapov, G. Lauterbach, S. P. Crago
In International Conference on Parallel and Distributed Processing Techniques and Applications
2003BibTex

A Performance Characterization of New Microprocessor paradigm on Data-Intensive KernelsJ. Suh, E. G. Kim, S. P. Crago, L. Srinivasan, M. C. French
In Workshop on Performance Characterization, Modeling, and Benchmarking for HPC Systems
2003BibTex

HiDISC: a decoupled architecture for data-intensive applicationsW. W. Ro, J. L. Gaudiot, S. P. Crago, A. M. Despain
In International Parallel and Distributed Processing Symposium
2003BibTex

System Architecture Issues for Polymorphous ComputingS. P. Crago, J. Suh, C. Chen, D. Kang, E. Kim
In 28th Annual GOMACTech Conference
2003BibTex

Pegasus and the Pulsar Search: From Metadata to Execution on the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, S. Koranda, A. Lazzarini, G. Mehta, M. A. Papa, K. Vahi
In Applications Grid Workshop, PPAM 2003
2003BibTex

Workflow Management in GriPhyNE. Deelman, J. Blythe, Y. Gil, C. Kesselman
In Grid Resource Management
2003BibTex

Mapping Abstract Complex Workflows onto Grid EnvironmentsE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A. Arbree, R. Cavanaugh, S. Koranda
In Journal of Grid Computing
2003, 25-39 pagesBibTex

Transparent Grid Computing: a Knowledge-Based ApproachJ. Blythe, E. Deelman, Y. Gil, C. Kesselman
In IAAI
2003BibTex

The Role of Planning in Grid ComputingJ. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, K. Vahi
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2003BibTex

Planning for workflow construction and maintenance on the GridJ. Blythe, E. Deelman, Y. Gil
In 2003 ICAPS Workshop on Planning for Web Services
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From Metadata to Execution on the Grid Pegasus and the Pulsar SearchE. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, S. Koranda, A. Lazzarini, M. A. Papa
2003BibTex

Montage: A Grid Enabled Image Mosaic Service for the National Virtual ObservatoryB. G. Berriman, J. C. Good, A. C. Laity, A. Bergou, J. C. Jacob, D. S. Katz, E. Deelman, C. Kesselman, G. Singh, M. - H. Su, R. Williams
In ADASS XIII
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Montage on the GridG. Singh, E. Deelman
2003BibTex

Multi-Wavelength Image Space: Another Grid-Enabled ScienceR. Williams, B. G. Berriman, E. Deelman, J. Good, J. C. Jacob, C. Kesselman, C. Lonsdale, S. Oliver, T. A. Prince
In Journal of Concurrency and Computation: Practice and Experience
2003BibTex

Overall Architecture and Control FlowE. Deelman, I. Foster, C. Kesselman, R. Moore, S. Ranka
2003BibTex

Types of Editors and SpecificationsJ. Blythe, R. Cavanaugh, E. Deelman, I. Foster, S. - H. Jang, C. Kesselman, K. Marzullo, R. Moore, V. Taylor, X. Zhang
2003BibTex

The Role of Planning in Grid ComputingJ. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, K. Vahi
In Proceedings of the Thirteenth International Conference on Automated Planning and Scheduling (ICAPS 2003), June 9-13, 2003, Trento, Italy
2003, 153–163 pagesBibTex

Pegasus and the Pulsar Search: From Metadata to Execution on the GridE. Deelman, J. Blythe, Y. Gil, C. Kesselman, S. Koranda, A. Lazzarini, G. Mehta, M. A. Papa, K. Vahi
In Parallel Processing and Applied Mathematics, 5th International Conference, PPAM 2003, Czestochowa, Poland, September 7-10, 2003. Revised Papers
2003, 821–830 pagesBibTex

2002

Dynamic coordination of information management services for processing dynamic web contentI. - Y. Ko, K. - T. Yao, R. Neches
In Proceedings of the Eleventh International World Wide Web Conference, WWW2002
2002, 355-365 pagesBibTex

Coarse-grain Pipelining for Multiple FPGA ArchitecturesH. Ziegler, B. So, M. Hall, P. Diniz
2002, 77–86 pagesBibTex

Data Reorganizaion Engines for the Next Generation of System-On-A-Chip FPGAsP. Diniz, J. Park
2002, 237–244 pagesBibTex

A Compiler Approach to Fast Design Space Exploration for FPGA SystemsB. So, M. Hall, P. Diniz
2002, 00–00 pagesBibTex

Selector: A Language Construct for Developing Dynamic ApplicationsP. Diniz, B. Liu
2002, 570-578 pagesBibTex

A Power-Aware, Satellite-Based Parallel Signal Processing SchemeP. M. Shriver, M. B. Gokhale, S. D. Briles, D. I. Kang, M. Cai, K. McCabe, S. P. Crago, J. Suh
In Power Aware Computing, Series in Computer Science, Kluwer Academic/Plenum Publishers
2002BibTex

VLSI in Computers and ProcessorsB. Serebrin, J. D. Owens, C. H. Chen, S. P. Crago, U. J. Kapasi, B. Khailany, P. Mattson, J. Namkoong, S. Rixner, W. J. Dally
In IEEE International Conference on Computer Design: VLSI in Computers and Processors
2002BibTex

DARPA Data Intensive Systems (DIS) Embedded Computing Benchmarks for Critical Defense Signal Processing ApplicationsS. Shank, S. P. Crago, R. Pancoast, J. Racosky, J. Suh, L. Trevito
In 6th Annual High Performance Embedded Computing Workshop
2002BibTex

An Optimal Voltage Synthesis Technique for a Power-Efficient Satellite ApplicationD. Kang, J. Suh, S. P. Crago
In 39th Design Automation Conference (DAC)
2002BibTex

Dynamic Power Management of Multiprocessor SystemsJ. Suh, D. Kang, S. P. Crago
In Tenth International Workshop on Parallel and Distributed Real-Time Systems (WPDRTS) in conjunction with IPDPS
2002BibTex

GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave ScientistsE. Deelman, C. Kesselman, G. Mehta, L. Meshkat, L. Pearlman, K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, S. Koranda
In High Performance Distributed Computing (HPDC)
2002BibTex

Pegasus: Planning for Execution in GridsE. Deelman, J. Blythe, Y. Gil, C. Kesselman
2002BibTex

�Intelligibility of speech in a virtual 3D environment: optimal design of auditory information displays�, Journal of Human Factors ResearchJ. MacDonald, J. D. Balakrishnan, M. D. Orosz, W. J. Karplus
2002BibTex

2001

Semantic Interoperability Scripting and MeasurementsK. - T. Yao, I. - Y. Ko, R. Neches, R. MacGregor
In Working Conference on Complex and Dynamic Systems Architecture
2001BibTex

A Semantic Model and Composition Mechanism for Active Document Collection Templates in Web-based Information Management SystemsI. - Y. Ko, R. Neches, K. - T. Yao
In Electronic Transactions on Artificial Intelligence (ETAI)
2001, 55-71 pagesBibTex

GeoWorlds: Integrating GIS and Digital Libraries for Situation Understanding and ManagementR. Neches, K. - T. Yao, I. - Y. Ko, A. Bugacov, V. Kumar, R. Eleish
In The New Review of Hypermedia and Multimedia (NRHM)
2001, 127-152 pagesBibTex

Matching and Searching Analysis for Parallel Hardware Implementation on FPGAsP. Moisset, P. Diniz, J. Park
2001, 125–133 pagesBibTex

A Behavioral Synthesis Estimation Interface for Configurable ComputingP. Diniz, A. Venkatachar
2001, 00–00 pagesBibTex

An External Memory Interface for FPGA-based Computing EnginesJ. Park, P. Diniz
In FCCM2001
2001, 00–00 pagesBibTex

Synthesis of Memory Access Controller for Streamed Data Applications for FPGA-based Computing EnginesJ. Park, P. Diniz
In Proc. 14th International Symposium on System Synthesis (ISSS'01)
2001, 221–226 pagesBibTex

Bridging the Gap between Compilation and Behavioral Synthesis in the DEFACTO SystemP. Diniz, M. Hall, J. Park, B. So, H. Ziegler
2001BibTex

Implementations of Real-time Data Intensive Applications on PIM-based Multiprocessor SystemsJ. Suh, M. Zhu, C. Li, S. P. Crago, S. F. Shank, R. H. Chau, W. J. Mazur, R. Pancoast
In Joint WPDRTS and EHPC 01
2001BibTex

PIM- and Stream Processor-based Processing for Radar Signal ApplicationsJ. Suh, S. P. Crago
In The Third Workshop on Media and Streaming Processors in conjunction with The 34th International Symposium on Microarchitecture
2001BibTex

PIM- and Stream Processor-Based SystemJ. Suh, S. P. Crago, C. Li, R. Parker
In Fifth Annual High Performance Embedded Computing Workshop
2001BibTex

Efficient Algorithms for Fixed-Point Arithmetic Operations In An Embedded PIMJ. Suh, D. Kang, S. P. Crago
In SCI 01
2001BibTex

Power-Aware Design Synthesis Techniques for Distributed Real-Time SystemsD. Kang, S. P. Crago, J. Suh
In ACM Workshop on Languages, Compilers, and Tools for Embedded Systems (LCTES) '01
2001BibTex

A PIM-Based MultiprocessorJ. Suh, C. Li, S. P. Crago, R. Parker
In IPDPS 01
2001BibTex

2000

Asynchronous information space analysis architecture using content and structure-based service brokeringK. - T. Yao, I. - Y. Ko, R. Eleish, R. Neches
In Proceedings of the Fifth ACM Conference on Digital Libraries
2000, 133-142 pagesBibTex

Semantically-Based Active Document Collection Templates for Web Information Management SystemsI. - Y. Ko, R. Neches, K. - T. Yao
In Proceedings of the International Workshop on the Semantic Web
2000BibTex

Automatic Synthesis of Data Storage and Contol Structures for FPGA-based Computing EnginesP. Diniz, J. Park
2000, 91–100 pagesBibTex

A High-Performance, Hierarchical Decoupled ArchitectureS. P. Crago, A. Despain, J. L. Gaudiot, M. Makhija, W. Ro, A. Srivastava
In MEmory access DEcoupling for superscalar and multiple issue Architectures (MEDEA) Workshop
2000BibTex

Distributed Corner Turn on a PIM-Based MultiprocessorJ. Suh, S. P. Crago, C. Li, R. Parker
In Fourth Annual Workshop on High Performance Embedded Computing (HPEC)
2000BibTex

Efficient Communication Algorithm for Multiple FPGA SystemsJ. Suh, D. Kang, S. P. Crago
In IEEE Symposium on Field Programmable Custom Computing Machines (FCCM) 2000
2000BibTex

�Using virtual 3-D audio in multi-speech channel and multimedia environments, � in Cockpit Display VII: Displays for Defense ApplicationsM. D. Orosz, W. J. Karplus, J. D. Balakrishnan
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2000BibTex

�A test bed for prototyping human/computer interfaces used in mission critical environments, � in Proceedings of 1st Annual IEEE International Conference on Multimedia and Expo (ICME2000), New York, NYM. D. Orosz, W. J. Karplus, J. D. Balakrishnan
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1999

Architectures for System-Level Applications of Adaptive ComputingB. Schott, C. Chen, S. P. Crago, J. Czarnaski, M. C. French, I. Hom, T. Tho, T. Valenti
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1999, 270-27 pagesBibTex

Architectures for System-Level Applications of Adaptive ComputingB. Schott, C. Chen, S. P. Crago, J. Czarnaski, M. C. French, I. Hom, T. Tho, T. Valenti
In Proceedings of the Seventh Annual IEEE Symposium on Field-Programmable Custom Computing Machines
1999, 270– pagesBibTex

Synchronous and Asynchronous Collaborative Information Space Analysis ToolsK. - T. Yao, R. Neches, I. - Y. Ko, R. Eleish, S. and Abhinkar
In Proceedings of the International Workshop on Collaboration and Mobile Computing (CMC 99)
1999BibTex

GeoWorlds: A Geographically Based Situation Understanding and Information Management System for Disaster Relief OperationsM. Coutinho, R. Neches, A. Bugacov, V. Kumar, K. - T. Yao, I. - Y. Ko, R. Eleish, S. Abhinkar
In 5th International Conference on Information Systems, Analysis and Synthesis (ISAS 99)
1999BibTex

GeoWorlds: A Geographically Based Information System for Situation Understanding and ManagementM. Coutinho, R. Neches, A. Bugacov, V. Kumar, K. - T. Yao, I. - Y. Ko, R. Eleish, S. Abhinkar
In First International Workshop on TeleGeoProcessing (TeleGeo 99)
1999BibTex

Eliminating Synchronization Bottlenecks in Object-Based Programs Using Adaptive ReplicationM. Rinard, P. Diniz
1999, 83–92 pagesBibTex

�A methodology for developing and controlling human/computer interfacesM. D. Orosz
1999BibTex

1998

Collaborative Information Space Analysis ToolsR. Neches, S. Abhinkar, F. Hu, R. Eleish, I. - Y. Ko, K. - T. Yao, Q. Zhu, P. Will
In D-Lib Magazine
1998BibTex

Lock Coarsening: Eliminating Lock Overhead in Automatically Parallelized Object-Based ProgramsP. Diniz, M. Rinard
1998, 2218–244 pagesBibTex

A Hierarchical Decoupled Instruction Stream ArchitectureS. P. Crago
In Ph.D. Thesis
1998BibTex

SLAAC: A Distributed Architecture for Adaptive ComputingS. P. Crago, B. Schott, R. Parker
In IEEE Symposium on FPGAs for Custom Computing Machines
1998BibTex

1997

Multi-level Modeling for Engineering Design OptimizationT. Ellman, J. Keane, M. Schwabacher, K. - T. Yao
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1997BibTex

Searching for Parts and Services on the WebQ. Zhu, F. Hu, K. - T. Yao, P. Will
In Proceedings of the International Symposium on Research, Development and Practice in Digital Libraries (ISDL '97)
1997BibTex

Commutativity Analysis: A New Analysis Technique for Parallelizing CompilersM. Rinard, P. Diniz
1997, 942–991 pagesBibTex

Synchronization Transformations for Parallel ComputingP. Diniz, M. Rinard
1997, 187–199 pagesBibTex

Dynamic Feedback: An Effective Technique for Adaptive ComputingP. Diniz, M. Rinard
1997, 71–84 pagesBibTex

HiDISC: A Decoupled Architecture for the FutureS. P. Crago, A. M. Despain
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1997BibTex