Publications
2019
Reproducible big data science: A case study in continuous FAIRness
Ravi Madduri, Kyle Chard, Mike d’Arcy, Segun C Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman, Ian Foster
PloS one 14 (4), e0213013, 2019
Big Data Bags: A Scalable Packaging Format for Science.
Mike D'Arcy, Kyle Chard, Ian T Foster, Carl Kesselman, Ravi K Madduri, Nickolaus D Saint, Rick Wagner
RO, 2019
2018
Towards an efficient and effective framework for the evolution of scientific databases
Robert E Schuler, Carl Kesselman
Proceedings of the 30th International Conference on Scientific and …, 2018
Ermrest: a web service for collaborative data management
Karl Czajkowski, Carl Kesselman, Robert E Schuler, Hongsuda Tangmunarunkit
Proceedings of the 30th International Conference on Scientific and …, 2018
Conserved and divergent features of human and mouse kidney organogenesis
Nils O Lindström, Jill A McMahon, Jinjin Guo, Tracy Tran, Qiuyu Guo, Elisabeth Rutledge, Riana K Parvez, Gohar Saribekyan, Robert E Schuler, Christopher Liao, Albert D Kim, Ahmed Abdelhalim, Seth W Ruffins, Matthew E Thornton, Laurence Basking, Brendan Grubbs, Carl Kesselman, Andrew P McMahon
Journal of the American Society of Nephrology 29 (3), 785-805, 2018
Neuroanatomical morphometric characterization of sex differences in youth using statistical learning
Farshid Sepehrband, Kirsten M Lynch, Ryan P Cabeen, Clio Gonzalez-Zacarias, Lu Zhao, Mike D'Arcy, Carl Kesselman, Megan M Herting, Ivo D Dinov, Arthur W Toga, Kristi A Clark
Neuroimage 172, 217-227, 2018
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
Eric W Deutsch, Roger Kramer, Joseph Ames, Andrew Bauman, David S Campbell, Kyle Chard, Kristi Clark, Mike D’Arcy, Ivo D Dinov, Rory Donovan, Ian Foster, Benjamin D Heavner, Leroy E Hood, Carl Kesselman, Ravi Madduri, Huaiyu Mi, Anushya Muruganujan, Judy Pa, Nathan D Price, Max Robinson, Farshid Sepehrband, Arthur W Toga, John Van Horn, Lu Zhao, Gustavo Glusman
bioRxiv, 258822, 2018
2017
Experiences with DERIVA: An asset management platform for accelerating eScience
Alejandro Bugacov, Karl Czajkowski, Carl Kesselman, Anoop Kumar, Robert E Schuler, Hongsuda Tangmunarunkit
2017 IEEE 13th International Conference on e-Science (e-Science), 79-88, 2017
ERMREST: A collaborative data catalog with fine grain access control
Karl Czajkowski, Carl Kesselman, Robert Schuler
2017 Ieee 13th international conference on E-science (E-science), 510-517, 2017
(Re) Building a kidney
Leif Oxburgh, Thomas J Carroll, Ondine Cleaver, Daniel R Gossett, Deborah K Hoshizaki, Jeffrey A Hubbell, Benjamin D Humphreys, Sanjay Jain, Jan Jensen, David L Kaplan, Carl Kesselman, Christian J Ketchum, Melissa H Little, Andrew P McMahon, Stuart J Shankland, Jason R Spence, M Todd Valerius, Jason A Wertheim, Oliver Wessely, Ying Zheng, Iain A Drummond
Journal of the American Society of Nephrology 28 (5), 1370-1378, 2017
2016
Accelerating data-driven discovery with scientific asset management
Robert E Schuler, Carl Kesselman, Karl Czajkowski
2016 IEEE 12th International Conference on e-Science (e-Science), 31-40, 2016
ERMrest: an entity-relationship data storage service for web-based, data-oriented collaboration
Karl Czajkowski, Carl Kesselman, Robert Schuler, Hongsuda Tangmunarunkit
arXiv preprint arXiv:1610.06044, 2016
The FaceBase Consortium: a comprehensive resource for craniofacial researchers
James F Brinkley, Shannon Fisher, Matthew P Harris, Greg Holmes, Joan E Hooper, Ethylin Wang Jabs, Kenneth L Jones, Carl Kesselman, Ophir D Klein, Richard L Maas, Mary L Marazita, Licia Selleri, Richard A Spritz, Harm van Bakel, Axel Visel, Trevor J Williams, Joanna Wysocka, FaceBase Consortium, Yang Chai
Development 143 (14), 2677-2688, 2016
MultiCellDS: a standard and a community for sharing multicellular data
Samuel H Friedman, Alexander RA Anderson, David M Bortz, Alexander G Fletcher, Hermann B Frieboes, Ahmadreza Ghaffarizadeh, David Robert Grimes, Andrea Hawkins-Daarud, Stefan Hoehme, Edwin F Juarez, Carl Kesselman, Roeland MH Merks, Shannon M Mumenthaler, Paul K Newton, Kerri-Ann Norton, Rishi Rawat, Russell C Rockne, Daniel Ruderman, Jacob Scott, Suzanne S Sindi, Jessica L Sparks, Kristin Swanson, David B Agus, Paul Macklin
bioRxiv, 090696, 2016
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets
Kyle Chard, Mike D'Arcy, Ben Heavner, Ian Foster, Carl Kesselman, Ravi Madduri, Alexis Rodriguez, Stian Soiland-Reyes, Carole Goble, Kristi Clark, Eric W Deutsch, Ivo Dinov, Nathan Price, Arthur Toga
2016 Ieee international conference on big data (big data), 319-328, 2016
MultiCellDS: a community-developed standard for curating microenvironment-dependent multicellular data
Samuel H Friedman, Alexander RA Anderson, David M Bortz, Alexander G Fletcher, Hermann B Frieboes, Ahmadreza Ghaffarizadeh, David Robert Grimes, Andrea Hawkins-Daarud, Stefan Hoehme, Edwin F Juarez, Carl Kesselman, Roeland MH Merks, Shannon M Mumenthaler, Paul K Newton, Kerri-Ann Norton, Rishi Rawat, Russell C Rockne, Daniel Ruderman, Jacob Scott, Suzanne S Sindi, Jessica L Sparks, Kristin Swanson, David B Agus, Paul Macklin
bioRxiv, 090456, 2016
Predictive big data analytics: a study of Parkinson’s disease using large, complex, heterogeneous, incongruent, multi-source and incomplete observations
Ivo D Dinov, Ben Heavner, Ming Tang, Gustavo Glusman, Kyle Chard, Mike Darcy, Ravi Madduri, Judy Pa, Cathie Spino, Carl Kesselman, Ian Foster, Eric W Deutsch, Nathan D Price, John D Van Horn, Joseph Ames, Kristi Clark, Leroy Hood, Benjamin M Hampstead, William Dauer, Arthur W Toga
PloS one 11 (8), e0157077, 2016
Managing Big Neuroimaging Data
Carl Kesselman
International Journal of Psychophysiology 100 (108), 30, 2016
2015
Data centric discovery with a data-oriented architecture
Robert Schuler, Carl Kesselman, Karl Czajkowski
Proceedings of the 1st Workshop on The Science of Cyberinfrastructure …, 2015
Big biomedical data as the key resource for discovery science
Arthur W Toga, Ian Foster, Carl Kesselman, Ravi Madduri, Kyle Chard, Eric W Deutsch, Nathan D Price, Gustavo Glusman, Benjamin D Heavner, Ivo D Dinov, Joseph Ames, John Van Horn, Roger Kramer, Leroy Hood
Journal of the American Medical Informatics Association 22 (6), 1126-1131, 2015