Publications

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2019
A. Brinckman, E. Deelman, S. Gupta, J. Nabrzyski, S. Park, R. F. da Silva, I. J. Taylor, and K. Vahi, "Collaborative Circuit Designs using the CRAFT Repository", Future Generation Computer Systems, vol. 94, pp. 841–853, 2019.
D. Garijo, D. Khider, V. Ratnakar, Y. Gil, E. Deelman, R. F. da Silva, C. Knoblock, Y. - Y. Chiang, M. Pham, J. Pujara, B. Vu, D. Feldman, R. Mayani, K. Cobourn, C. Duffy, A. Kemanian, L. Shu, V. Kumar, A. Khandelwal, K. Tayal, et al., "An Intelligent Interface for Integrating Climate, Hydrology, Agriculture, and Socioeconomic Models", ACM 24th International Conference on Intelligent User Interfaces (IUI'19), pp. 111–112, 2019.
R. F. da Silva, R. Filgueira, E. Deelman, E. Pairo-Castineira, I. M. Overton, and M. Atkinson, "Using Simple PID-inspired Controllers for Online Resilient Resource Management of Distributed Scientific Workflows", Future Generation Computer Systems, vol. 95, pp. 615-628, 2019.
2018
T. Estrada, J. Benson, H. Carrillo-Cabada, A. Razavi, M. Cuendet, H. Weinstein, E. Deelman, and M. Taufer, "Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis", 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, pp. 315-324, 08, 2018.
A. Brinckman, E. Deelman, S. Gupta, J. Nabrzyski, S. Park, R. F. da Silva, Taylor, Ian J., and K. Vahi, "Collaborative Circuit Designs using the CRAFT Repository", Future Generation Computer Systems, vol. accepted, 2018.
T. M. A. Do, M. Jiang, B. Gallagher, A. Chu, C. Harrison, K. Vahi, and E. Deelman, "Enabling Data Analytics Workflows using Node-Local Storage", The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC18), Poster, 2018.
S. Pandey, K. Vahi, R. F. da Silva, E. Deelman, M. Jian, C. Harrison, A. Chu, and H. Casanova, Event-Based Triggering and Management of Scientific Workflow Ensembles, , 2018.
E. Deelman, T. Peterka, I. Altintas, C. D. Carothers, K. K. van Dam, K. Moreland, M. Parashar, L. Ramakrishnan, M. Taufer, and J. Vetter, "The future of scientific workflows", The International Journal of High Performance Computing Applications, vol. 32, no. 1, pp. 159–175, 2018.
R. Filgueira, R. F. da Silva, E. Deelman, V. Christodoulou, and A. Krause, "IoT-Hub: New IoT data-platform for Virtual Research Environments", 10th International Workshop on Science Gateways (IWSG 2018), 2018.
B. Tovar, R. F. da Silva, G. Juve, E. Deelman, W. Allcock, D. Thain, and M. Livny, "A Job Sizing Strategy for High-Throughput Scientific Workflows", IEEE Transactions on Parallel and Distributed Systems, vol. 29, no. 2, pp. 240–253, 2018.
Y. Gil, K. Cobourn, E. Deelman, C. Duffy, R. F. da Silva, A. Kemanian, C. Knoblock, V. Kumar, S. Peckham, L. Carvalho, Y. - Y. Chiang, D. Garijo, D. Khider, A. Khandelwal, M. Pahm, J. Pujara, V. Ratnakar, M. Stoica, and B. Vu, "MINT: Model Integration Through Knowledge-Powered Data and Process Composition", 9th International Congress on Environmental Modelling and Software, 2018.
R. F. da Silva, D. Garijo, S. Peckham, Y. Gil, E. Deelman, and V. Ratnakar, "Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution", 9th International Congress on Environmental Modelling and Software, 2018.
K. Vahi, M. H. Wang, C. Chang, S. Dodelson, M. Rynge, and E. Deelman, "Workflows using Pegasus: Enabling Dark Energy Survey Pipelines", 28th annual international Astronomical Data Analysis Software & Systems (ADASS), 2018.
2017
I. J. Taylor, A. Brinckman, E. Deelman, R. F. da Silva, S. Gupta, J. Nabrzyski, S. Park, and K. Vahi, "Accelerating Circuit Realization via a Collaborative Gateway of Innovations", 9th International Workshop on Science Gateways (IWSG 2017), 2017.
I. J. Taylor, A. Brinckman, E. Deelman, R. F. da Silva, S. Gupta, J. Nabrzyski, S. Park, and K. Vahi, "Accelerating Circuit Realization via a Collaborative Gateway of Innovations", 9th International Workshop on Science Gateways (IWSG 2017), 2017.
R. F. da Silva, R. Filgueira, I. Pietri, M. Jiang, R. Sakellariou, and E. Deelman, "A Characterization of Workflow Management Systems for Extreme-Scale Applications", Future Generation Computer Systems, vol. accepted, 2017.
V. Lynch, J. B. Calvo, E. Deelman, R. F. da Silva, M. Goswami, Y. Hui, E. Lingerfelt, and J. Vetter, "Distributed Workflows for Modeling Experimental Data", 2017 IEEE High Performance Extreme Computing Conference (HPEC'17), 2017.
E. Deelman, T. Peterka, I. Altintas, C. D. Carothers, K. K. van Dam, K. Moreland, M. Parashar, L. Ramakrishnan, M. Taufer, and J. Vetter, "The future of scientific workflows", The International Journal of High Performance Computing Applications, vol. accepted, 2017.
B. Tovar, R. F. da Silva, G. Juve, E. Deelman, W. Allcock, D. Thain, and M. Livny, "A Job Sizing Strategy for High-Throughput Scientific Workflows", IEEE Transactions on Parallel and Distributed Systems, vol. accepted, 2017.
R. F. da Silva, S. Callaghan, and E. Deelman, "On the Use of Burst Buffers for Accelerating Data-Intensive Scientific Workflows", 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17), 2017.
I. Santana-Perez, R. F. da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, and O. Corcho, "Reproducibility of Execution Environments in Computational Science Using Semantics and Clouds", Future Generation Computer Systems, vol. 67, pp. 354–367, 2017.
I. S. Pérez, R. F. da Silva, M. Rynge, E. Deelman, M. {\'ı}a P. S. -, and Ó. Corcho, "Reproducibility of execution environments in computational science using Semantics and Clouds", Future Generation Comp. Syst., vol. 67, pp. 354–367, 2017.
A. Mandal, P. Ruth, I. Baldin, R. F. da Silva, and E. Deelman, "Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges", First International Workshop on Workflow Science (WoWS 2017), 2017.
E. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, and R. F. da Silva, "PANORAMA: An Approach to Performance Modeling and Diagnosis of Extreme Scale Workflows", International Journal of High Performance Computing Applications, vol. 31, no. 1, pp. 4–18, 2017.
S. Callaghan, G. Juve, K. Vahi, P. J. Maechling, T. H. Jordan, and E. Deelman, "rvGAHP - Push-based Job Submission using Reverse SSH Connections", 12th Workshop on Workflows in Support of Large-Scale Science (WORKS'17), 2017.