Publications

This section contains publications published by ISI over the past several decades.

2023

PDB-Dev: A prototype system for archiving integrative structures

Brinda Vallat, Benjamin Webb, Arthur Zalevsky, Serban Voinea, Hongsuda Tangmunarunkit, Monica Sekharan, John D Westbrook, Carl Kesselman, Stephen K Burley, Helen M Berman, Andrej Sali
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 79, C72-C72,  2023

Rpu: The ring processing unit

Deepraj Soni, Negar Neda, Naifeng Zhang, Benedict Reynwar, Homer Gamil, Benjamin Heyman, Mohammed Nabeel, Ahmad Al Badawi, Yuriy Polyakov, Kellie Canida, Massoud Pedram, Michail Maniatakos, David Bruce Cousins, Franz Franchetti, Matthew French, Andrew Schmidt, Brandon Reagen
2023 IEEE International Symposium on Performance Analysis of Systems and …,  2023

MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses (vol 9, 230, 2022)

Jay Devine, Marta Vidal-Garcia, Wei Liu, Amanda Neves, Lucas D Lo Vercio, Rebecca M Green, Heather A Richbourg, Marta Marchini, Colton M Unger, Audrey C Nickle, Bethany Radford, Nathan M Young, Paula N Gonzalez, Robert E Schuler, Alejandro Bugacov, Campbell Rolian, Christopher J Percival, Trevor Williams, Lee Niswander, Anne L Calof, Arthur D Lander, Axel Visel, Frank R Jirik, James M Cheverud, Ophir D Klein, Ramon Y Birnbaum, Amy E Merrill, Rebecca R Ackermann, Daniel Graf, Myriam Hemberger, Wendy Dean, Nils D Forkert, Stephen A Murray, Henrik Westerberg, Ralph S Marcucio, Benedikt Hallgrimsson
SCIENTIFIC DATA 10 (1),  2023

Collaborative Research: CyberTraining: Implementation: Medium: CyberInfrastructure Training and Education for Synchrotron X-Ray Science (X-CITE)

Ewa Deelman
NSF Award Number 2320375. Directorate for Computer and Information Science …,  2023

Collaborative Research: IMR: MM-1B: Privacy in Internet Measurements Applied To WAN and Telematics

John S Heidemann
NSF Award Number 2319409. Directorate for Computer and Information Science …,  2023

Research Infrastructure: Mid-scale RI-1 (M1: IP): SPHERE-Security and Privacy Heterogeneous Environment for Reproducible Experimentation

Jelena Mirkovic
NSF Award Number 2330066. Directorate for Computer and Information Science …,  2023

CICI: RSSD: DISCERN: Datasets to Illuminate Suspicious Computations on Engineering Research Networks

Jelena Mirkovic
NSF Award Number 2319864. Directorate for Computer and Information Science …,  2023

Resource-rational moral judgment

Sarah A Wu, Xiang Ren, Tobias Gerstenberg, Yejin Choi, Sydney Levine
Proceedings of the Annual Meeting of the Cognitive Science Society 46,  2023

Defending Root DNS Servers against DDoS Using Layered Defenses (Extended)

ASM Rizvi, Jelena Mirkovic, John Heidemann, Wesley Hardaker, Robert Story
Ad Hoc Networks 151, 103259,  2023

NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data

Lei Wang, José Luis Ambite, Abhishek Appaji, Janine Bijsterbosch, Jerome Dockes, Rick Herrick, Alex Kogan, Howard Lander, Daniel Marcus, Stephen M Moore, Jean-Baptiste Poline, Arcot Rajasekar, Satya S Sahoo, Matthew D Turner, Xiaochen Wang, Yue Wang, Jessica A Turner
Frontiers in neuroinformatics 17, 1215261,  2023

GAIA: Generating Alternatives for Interpretation and Analysis

Marjorie Freedman, Shi-fu Chang, Filip Ilievski, Heng Ji, Kathleen Mckeown, Daisy Wang
2023

Exploiting Network Structure in Multi-criteria Distributed and Competitive Stationary-resource Searching

Fandel Lin, Hsun-Ping Hsieh
ACM Transactions on Spatial Algorithms and Systems 9 (4), 1-33,  2023

Exploiting polygon metadata to understand raster maps-accurate polygonal feature extraction

Fandel Lin, Craig A Knoblock, Basel Shbita, Binh Vu, Zekun Li, Yao-Yi Chiang
Proceedings of the 31st ACM International Conference on Advances in …,  2023

Indirect cooperation in distributed stationary-resource searching with predefined destinations

Fandel Lin, Craig A Knoblock
Proceedings of the 31st ACM International Conference on Advances in …,  2023

A Machine-Learning Approach to Recognizing Teaching Beliefs in Narrative Stories of Outstanding Professors

Fandel Lin, Ding-Ying Guo, Jer-Yann Lin
International Conference on Artificial Intelligence in Education, 739-745,  2023

BRAINTEASER: Lateral thinking puzzles for large language models

Yifan Jiang, Filip Ilievski, Kaixin Ma, Zhivar Sourati
EMNLP 2023,  2023

Transferring Procedural Knowledge across Commonsense Tasks

Yifan Jiang, Filip Ilievski, Kaixin Ma
European Conference on Artificial Intelligence (ECAI) 2023,  2023

WinoQueer: A community-inthe-loop benchmark for anti-LGBTQ+ bias in large language models

Virginia K Felkner, Ho-Chun Herbert Chang, Eugene Jang, Jonathan May
arXiv preprint arXiv:2306.15087,  2023

Integrity and Assurance Tools Targeting FPGA Hard IP Block Bitstream Undocumented Functionality

Andrew Schmidt, Benedict Reynwar, Kellie Canida, Matthew French
Government Microcircuit Applications and Critical Technology Conference …,  2023

BITE: Textual backdoor attacks with iterative trigger injection

Jun Yan, Vansh Gupta, Xiang Ren
Proceedings of the 61st Annual Meeting of the Association for Computational …,  2023