Publications

This section contains publications published by ISI over the past several decades.

2024

Detecting paleoclimate transitions with Laplacian eigenmaps of recurrence matrices (LERM)

Alexander James, Julien Emile‐Geay, Nishant Malik, Deborah Khider
Paleoceanography and Paleoclimatology 39 (1), e2023PA004700,  2024

Look, Learn and Leverage (L): Mitigating Visual-Domain Shift and Discovering Intrinsic Relations via Symbolic Alignment

Hanchen Xie, Jiageng Zhu, Mahyar Khayatkhoei, Jiazhi Li, Wael AbdAlmageed
arXiv preprint arXiv:2408.17363,  2024

An investigation on the position encoding in vision-based dynamics prediction

Jiageng Zhu, Hanchen Xie, Jiazhi Li, Mahyar Khayatkhoei, Wael AbdAlmageed
arXiv preprint arXiv:2408.15201,  2024

Exploring perceptual limitation of multimodal large language models

Jiarui Zhang, Jinyi Hu, Mahyar Khayatkhoei, Filip Ilievski, Maosong Sun
arXiv preprint arXiv:2402.07384,  2024

Multi-Scope Representation Learning for Causal Relations Discovery with New Challenging Datasets

Jiageng Zhu, Hanchen Xie, Jianhua Wu, Mohamed E Hussein, Mahyar Khayatkhoei, Jiazhi Li, Wael AbdAlmageed
Mouth 3, 4,  2024

Manifpt: Defining and analyzing fingerprints of generative models

Hae Jin Song, Mahyar Khayatkhoei, Wael AbdAlmageed
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …,  2024

Deriva-ML: A Continuous FAIRness Approach to Reproducible Machine Learning Models

Zhiwei Li, Carl Kesselman, Mike D’Arcy, Michael Pazzani, Benjamin Yizing Xu
2024 IEEE 20th International Conference on e-Science (e-Science), 1-10,  2024

IHMCIF: an extension of the PDBx/mmCIF data standard for integrative structure determination methods

Brinda Vallat, Benjamin M Webb, John D Westbrook, Thomas D Goddard, Christian A Hanke, Andrea Graziadei, Ezra Peisach, Arthur Zalevsky, Jared Sagendorf, Hongsuda Tangmunarunkit, Serban Voinea, Monica Sekharan, Jian Yu, Alexander AMJJ Bonvin, Frank DiMaio, Gerhard Hummer, Jens Meiler, Emad Tajkhorshid, Thomas E Ferrin, Catherine L Lawson, Alexander Leitner, Juri Rappsilber, Claus AM Seidel, Cy M Jeffries, Stephen K Burley, Jeffrey C Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar, Torsten Schwede, Jill Trewhella, Carl Kesselman, Helen M Berman, Andrej Sali
Journal of molecular biology, 168546,  2024

Experimental Implementation of Quantum Steganography Using Coherent States

Haley Weinstein, Bruno Avritzer, Todd A Brun, Jonathan L Habif
CLEO: Science and Innovations, JW2A. 224,  2024

Quantum Pulse Position Modulation using Entangled States for Communication Security

Tahereh Rezaei, Chitra Vadlamani, Amir Kalev, Jonathan L Habif
CLEO: Science and Innovations, JW2A. 86,  2024

Fast, Single Shot Readout for Whispering Gallery Mode Resonator Device

Haley Weinstein, Jiayuan Zhang, Srinivas Tadigadapa, Jonathan L Habif
2024 Conference on Lasers and Electro-Optics (CLEO), 1-2,  2024

Entangled State Quantum Pulse Position Modulation for Communication Security

Tahereh Rezaei, Amir Kalev, Jonathan Habif
Bulletin of the American Physical Society,  2024

Optically biased and controlled signal processing in silicon photonics

Samer Idres, Jonathan Habif, Hossein Hashemi
Optics Express 32 (4), 6130-6140,  2024

Integrated All-Optically Controlled FIR Filter and Data Sequence Detector Using WDM Laser Signals

Samer Idres, Jonathan Habif, Hossein Hashemi
Frontiers in Optics, FD1. 9,  2024

Reconfigurable Optical Recognition of 3 Independent Data Patterns Using Intra-Symbol Time Multiplexing and Nonlinear Wave Mixing

Amir Minoofar, Abdulrahman Alhaddad, Wing Ko, Hongkun Lian, Huibin Zhou, Narek Karapetyan, Muralekrishnan Ramakrishnan, Zile Jiang, Ahmed Almaiman, Murali Annavaram, Moshe Tur, Jonathan L Habif, Alan E Willner
Frontiers in Optics, JTu7A. 4,  2024

Tunable and Reconfigurable 10-Gbaud Optical Data Format Aggregation of Two Independent Channels with Constellation Biasing by using Nonlinear Wave Mixing

Wing Ko, Abdulrahman Alhaddad, Amir Minoofar, Narek Karapetyan, Huibin Zhou, Muralekrishnan Ramakrishnan, Zile Jiang, Xinzhou Su, Moshe Tur, Jonathan L Habif, Alan E Willner
Frontiers in Optics, FM3C. 5,  2024

Universal all-optical zero-bias logic gates in silicon photonics

Samer Idres, Jonathan L Habif, Hossein Hashemi
Optics Express 32 (21), 36063-36074,  2024

Tunable pattern recognition of optical QPSK data using optical correlation and direct detection

Abdulrahman Alhaddad, Amir Minoofar, Wing Ko, Narek Karapetyan, Muralekrishnan Ramakrishnan, Huibin Zhou, Yuxiang Duan, Zile Jiang, Xinzhou Su, Yingning Wang, Ruoyu Zeng, Hao Song, Ahmed Almaiman, Moshe Tur, Jonathan L Habif, Alan E Willner
Optics Letters 49 (18), 5079-5082,  2024

Tunable optical matrix convolution of 20-Gbit/s QPSK 2-D data with a kernel using optical wave mixing

Amir Minoofar, Abdulrahman Alhaddad, Wing Ko, Narek Karapetyan, Ahmed Almaiman, Huibin Zhou, Muralekrishnan Ramakrishnan, Murali Annavaram, Moshe Tur, Jonathan L Habif, Alan E Willner
Optics Letters 49 (17), 4899-4902,  2024

High Fidelity Artificial Quantum Thermal State Generation using Encoded Coherent States

Haley Weinstein, Bruno Avritzer, Todd A Brun, Jonathan L Habif
arXiv preprint arXiv:2405.03881,  2024